scholarly journals KLASIFIKASI CITRA BATIK INDONESIA DAN MALAYSIA DENGAN METODE MODIFIED DISCRIMINANT ANALYSIS

2019 ◽  
Vol 3 (1) ◽  
pp. 11
Author(s):  
Cynthia Cynthia ◽  
Janson Hendryli ◽  
Dyah Erny Herwindiati
Keyword(s):  
Discriminant Analysis ◽  
Linear Discriminant Analysis ◽  
Confusion Matrix ◽  
Texture Features ◽  
Color Histogram ◽  
Daubechies Wavelet ◽  
Linear Discriminant ◽  
Java Programming ◽  
Color Features ◽  
Lower Test

The application of Indonesian and Malaysian batik image classification using the Linear Discriminant Analysis (LDA) and Modified Discriminant Analysis (MDA) method is an introduction application that is used to classify images in the form of batik. Making this application uses the Java programming language to run feature retrieval methods, namely Color Histogram and Daubechies Wavelet and classification methods, namely LDA and MDA. Testing is done by blackbox testing method and confusion matrix. Tests are performed using color features, texture features, and a combination of training images and new test images. The best percentage test results are testing using color features, whereas with texture and the combination of both features get a slightly lower test percentage result.Aplikasi klasifikasi citra batik Indonesia dan Malaysia dengan metode Linear Discriminant Analysis (LDA) dan Modified Discriminant Analysis (MDA) merupakan aplikasi pengenalan yang digunakan untuk mengklasifikasi citra berupa batik. Pembuatan aplikasi ini menggunakan bahasa pemrograman Java untuk menjalankan metode pengambilan fitur yaitu Color Histogram dan Daubechies Wavelet dan metode pengklasifikasian yaitu LDA dan MDA. Pengujian dilakukan dengan metode blackbox testing dan matriks konfusi. Pengujian dilakukan dengan menggunakan fitur ciri warna, ciri tekstur, dan gabungan dari citra latih dan citra uji baru. Hasil persentase pengujian terbaik adalah pengujian dengan menggunakan ciri warna, sedangkan dengan ciri tekstur dan gabungan mendapatkan hasil persentase pengujian sedikit rendah.

Effect of Topography on Maize Grains Elemental Profile: A Chemometric Approach

2020 ◽  
Vol 16 (8) ◽  
pp. 1079-1087
Author(s):  
Jorgelina Z. Heredia ◽  
Carlos A. Moldes ◽  
Raúl A. Gil ◽  
José M. Camiña
Keyword(s):  
Cluster Analysis ◽  
Discriminant Analysis ◽  
Linear Discriminant Analysis ◽  
Microwave Plasma ◽  
Emission Spectrometry ◽  
Linear Discriminant ◽  
Maize Seeds ◽  
Elemental Profile ◽  
Mineral Profile ◽  
Topographic Characteristics

Background: The elemental composition of maize grains depends on the soil, land and environment characteristics where the crop grows. These effects are important to evaluate the availability of nutrients with complex dynamics, such as the concentration of macro and micronutrients in soils, which can vary according to different topographies. There is available scarce information about the influence of topographic characteristics (upland and lowland) where culture is developed with the mineral composition of crop products, in the present case, maize seeds. On the other hand, the study of the topographic effect on crops using multivariate analysis tools has not been reported. Objective: This paper assesses the effect of topographic conditions on plants, analyzing the mineral profiles in maize seeds obtained in two land conditions: uplands and lowlands. Materials and Methods: The mineral profile was studied by microwave plasma atomic emission spectrometry. Samples were collected from lowlands and uplands of cultivable lands of the north-east of La Pampa province, Argentina. Results: Differentiation of maize seeds collected from both topographical areas was achieved by principal components analysis (PCA), cluster analysis (CA) and linear discriminant analysis (LDA). PCA model based on mineral profile allowed to differentiate seeds from upland and lowlands by the influence of Cr and Mg variables. A significant accumulation of Cr and Mg in seeds from lowlands was observed. Cluster analysis confirmed such grouping but also, linear discriminant analysis achieved a correct classification of both the crops, showing the effect of topography on elemental profile. Conclusions: Multi-elemental analysis combined with chemometric tools proved useful to assess the effect of topographic characteristics on crops.

Colorectal Cancer Classification and Survival Analysis Based on an Integrated RNA and DNA molecular signature

2020 ◽  
Vol 15 ◽  
Author(s):  
Mohanad Mohammed ◽  
Henry Mwambi ◽  
Bernard Omolo
Keyword(s):  
Colorectal Cancer ◽  
Survival Analysis ◽  
Discriminant Analysis ◽  
Linear Discriminant Analysis ◽  
Negative Binomial ◽  
Sub Saharan Africa ◽  
Support Vector ◽  
Mutation Status ◽  
Linear Discriminant ◽  
Rnaseq Data

Background: Colorectal cancer (CRC) is the third most common cancer among women and men in the USA, and recent studies have shown an increasing incidence in less developed regions, including Sub-Saharan Africa (SSA). We developed a hybrid (DNA mutation and RNA expression) signature and assessed its predictive properties for the mutation status and survival of CRC patients. Methods: Publicly-available microarray and RNASeq data from 54 matched formalin-fixed paraffin-embedded (FFPE) samples from the Affymetrix GeneChip and RNASeq platforms, were used to obtain differentially expressed genes between mutant and wild-type samples. We applied the support-vector machines, artificial neural networks, random forests, k-nearest neighbor, naïve Bayes, negative binomial linear discriminant analysis, and the Poisson linear discriminant analysis algorithms for classification. Cox proportional hazards model was used for survival analysis. Results: Compared to the genelist from each of the individual platforms, the hybrid genelist had the highest accuracy, sensitivity, specificity, and AUC for mutation status, across all the classifiers and is prognostic for survival in patients with CRC. NBLDA method was the best performer on the RNASeq data while the SVM method was the most suitable classifier for CRC across the two data types. Nine genes were found to be predictive of survival. Conclusion: This signature could be useful in clinical practice, especially for colorectal cancer diagnosis and therapy. Future studies should determine the effectiveness of integration in cancer survival analysis and the application on unbalanced data, where the classes are of different sizes, as well as on data with multiple classes.

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