Effects of omadacycline on gut microbiota populations and Clostridium difficile germination, proliferation and toxin production in an in vitro model of the human gut

Author(s):  
Caroline Chilton
Anaerobe ◽  
2015 ◽  
Vol 34 ◽  
pp. 50-52 ◽  
Author(s):  
William Tottey ◽  
Nadia Gaci ◽  
Guillaume Borrel ◽  
Monique Alric ◽  
Paul W. O'Toole ◽  
...  

2020 ◽  
Vol 263 ◽  
pp. 114580 ◽  
Author(s):  
Haifeng Chi ◽  
Yanwei Hou ◽  
Guofeng Li ◽  
Youchi Zhang ◽  
Frédéric Coulon ◽  
...  

2008 ◽  
Vol 53 (2) ◽  
pp. 412-420 ◽  
Author(s):  
Katie Saxton ◽  
Simon D. Baines ◽  
Jane Freeman ◽  
Rachael O'Connor ◽  
Mark H. Wilcox

ABSTRACT The incidence of Clostridium difficile infection is increasing, with reports implicating fluoroquinolone use. A three-stage chemostat gut model was used to study the effects of three fluoroquinolones (ciprofloxacin, levofloxacin, and moxifloxacin) on the gut microbiota and two epidemic C. difficile strains, strains of PCR ribotypes 027 and 001, in separate experiments. C. difficile total viable counts, spore counts, and cytotoxin titers were determined. The emergence of C. difficile isolates with reduced antibiotic susceptibility was monitored with fluoroquinolone-containing medium, and molecular analysis of the quinolone resistance-determining region was performed. C. difficile spores were quiescent in the absence of fluoroquinolones. Instillation of each fluoroquinolone led to C. difficile spore germination and high-level cytotoxin production. High-level toxin production occurred after detectable spore germination in all experiments except those with C. difficile PCR ribotype 027 and moxifloxacin, in which marked cytotoxin production preceded detectable germination, which coincided with isolate recovery on fluoroquinolone-containing medium. Three C. difficile PCR ribotype 027 isolates and one C. difficile PCR ribotype 001 isolate from fluoroquinolone-containing medium exhibited elevated MICs (80 to ≥180 mg/liter) and possessed mutations in gyrA or gyrB. These in vitro results suggest that all fluoroquinolones have the propensity to induce C. difficile infection, regardless of their antianaerobe activities. Resistant mutants were seen only following moxifloxacin exposure.


2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Francesco Biagini ◽  
Marco Calvigioni ◽  
Anna Lapomarda ◽  
Alessandra Vecchione ◽  
Chiara Magliaro ◽  
...  

AbstractClinical trials and animal studies on the gut microbiota are often limited by the difficult access to the gut, restricted possibility of in vivo monitoring, and ethical issues. An easily accessible and monitorable in vitro model of the gut microbiota represents a valid tool for a wider comprehension of the mechanisms by which microbes interact with the host and with each other. Herein, we present a novel and reliable system for culturing the human gut microbiota in vitro. An electrospun gelatin structure was biofabricated as scaffold for microbial growth. The efficiency of this structure in supporting microbial proliferation and biofilm formation was initially assessed for five microbes commonly inhabiting the human gut. The human fecal microbiota was then cultured on the scaffolds and microbial biofilms monitored by confocal laser and scanning electron microscopy and quantified over time. Metagenomic analyses and Real-Time qPCRs were performed to evaluate the stability of the cultured microbiota in terms of qualitative and quantitative composition. Our results reveal the three-dimensionality of the scaffold-adhered microbial consortia that maintain the bacterial biodiversity and richness found in the original sample. These findings demonstrate the validity of the developed electrospun gelatin-based system for in vitro culturing the human gut microbiota.


2013 ◽  
Vol 68 (5) ◽  
pp. 1139-1143 ◽  
Author(s):  
S. D. Baines ◽  
G. S. Crowther ◽  
S. L. Todhunter ◽  
J. Freeman ◽  
C. H. Chilton ◽  
...  

Anaerobe ◽  
2010 ◽  
Vol 16 (6) ◽  
pp. 549-554 ◽  
Author(s):  
Emma Meader ◽  
Melinda J. Mayer ◽  
Michael J. Gasson ◽  
Dietmar Steverding ◽  
Simon R. Carding ◽  
...  

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