PERFORMANCE OF THE BIOMARK HD REAL-TIME PCR SYSTEM (FLUIDIGM) FOR THE DETECTION OF COMMON NASOPHARYNGEAL BACTERIAL PATHOGENS AND SEROTYPING STREPTOCOCCUS PNEUMONIAE

Author(s):  
Courtney Olwagen
2020 ◽  
Vol 18 ◽  
Author(s):  
Pegah Shakib ◽  
Mohammad Reza Zolfaghari

Background: Conventional laboratory culture-based methods for diagnosis of Streptococcus pneumoniae are time-consuming and yield false negative results. Molecular methods including real-time (RT)-PCR rapid methods and conventional PCR due to higher sensitivity and accuracy have been replaced instead traditional culture assay. The aim of the current study was to evaluate lytA gene for detection of Streptococcus pneumoniae in the cerebrospinal fluid of human patients with meningitis using real-time PCR assay. Material and Methods: In this cross-sectional study, a total of 30 clinical specimens were collected from patients in a period from September to December 2018. In order to evaluate the presence of lytA gene, conventional and real-time PCR methods were used without culture. Results: From 30 sputum samples five (16.66%) isolates were identified as S. pneumoniae by lytA PCR and sequencing. Discussion: In this research, an accurate and rapid real-time PCR method was used, which is based on lytA gene for diagnosis of bacteria so that it can be diagnosed. Based on the sequencing results, the sensitivity for detection of lytA gene was 100% (5/5).


2018 ◽  
Vol 36 (7) ◽  
pp. 428-430 ◽  
Author(s):  
Juan Carlos Sanz ◽  
Esther Ríos ◽  
Iciar Rodríguez-Avial ◽  
Belén Ramos ◽  
Mercedes Marín ◽  
...  

2019 ◽  
Vol 72 (2) ◽  
pp. 88-93 ◽  
Author(s):  
Goutam Chowdhury ◽  
Oscar C. Stine ◽  
Krishnan Rajendran ◽  
Asish K. Mukhopadhyay ◽  
Keinosuke Okamoto ◽  
...  

2011 ◽  
Vol 10 (60) ◽  
pp. 12826-12832 ◽  
Author(s):  
Nomanpour Bizhan ◽  
Ghodousi Arash ◽  
Babaei Toraj ◽  
AliJavad Mousavi Seyd ◽  
Asadi Soroor ◽  
...  

2021 ◽  
Vol 8 (1) ◽  
Author(s):  
Kyung Hoon Kim ◽  
MinHo Yang ◽  
Younseong Song ◽  
Chi Hyun Kim ◽  
Young Mee Jung ◽  
...  

AbstractA bacteria-capturing platform is a critical function of accurate, quantitative, and sensitive identification of bacterial pathogens for potential usage in the detection of foodborne diseases. Despite the development of various nanostructures and their surface chemical modification strategies, relative to the principal physical contact propagation of bacterial infections, mechanically robust and nanostructured platforms that are available to capture bacteria remain a significant problem. Here, a three-dimensional (3D) hierarchically structured polyaniline nanoweb film is developed for the efficient capture of bacterial pathogens by hand-touching. This unique nanostructure ensures sufficient mechanical resistance when exposed to compression and shear forces and facilitates the 3D interfacial interactions between bacterial extracellular organelles and polyaniline surfaces. The bacterial pathogens (Escherichia coli O157:H7, Salmonella enteritidis, and Staphylococcus aureus) are efficiently captured through finger-touching, as verified by the polymerase chain reaction (PCR) analysis. Moreover, the real-time PCR results of finger-touched cells on a 3D nanoweb film show a highly sensitive detection of bacteria, which is similar to those of the real-time PCR using cultured cells without the capturing step without any interfering of fluorescence signal and structural deformation during thermal cycling. Graphic Abstract


2018 ◽  
Vol 18 ◽  
pp. S186
Author(s):  
Mervat Mansour ◽  
Iman Ragab ◽  
Marwa Saad ◽  
Eman Elkholy ◽  
Ebtsam Abdel-Hafez

2021 ◽  
Vol 329 ◽  
pp. 129227
Author(s):  
M.G. Rizzo ◽  
S. Carnazza ◽  
L.M. De Plano ◽  
D. Franco ◽  
M.S. Nicolò ◽  
...  

2013 ◽  
Vol 13 (1) ◽  
Author(s):  
Henry M Wu ◽  
Soraia M Cordeiro ◽  
Brian H Harcourt ◽  
Maria da Gloria S Carvalho ◽  
Jailton Azevedo ◽  
...  

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