NEW DISTRIBUTION REPORT ON THE ALIEN SPECIES ARTEMISIA VERLOTIORUM LAMOTTE (ASTERACEAE-ANTHEMIDEAE) FROM GILGIT-BALTISTAN REGION OF PAKISTAN

2020 ◽  
Vol 27 (2) ◽  
pp. 167-178
Author(s):  
Adil Hussain ◽  
Muhammad Qasim Hayat ◽  
Syed Ali Imran Bokhari
Keyword(s):  
Phylogenetic Analysis ◽  
Nuclear Ribosomal Dna ◽  
Species List ◽  
Western Asia ◽  
External Transcribed Spacer ◽  
Artemisia Species ◽  
Likelihood Approach ◽  
Gilgit Baltistan ◽  
North And South ◽  
New Distribution

Artemisia verlotiorum Lamotte (Asteraceae), a species described from Europe but native to East Asia is an alien and/or invasive species grow naturally in many European regions, North and South Africa, South America, Australia, New Zealand and Western Asia. In continuance to our work on Northeastern Pakistani Artemisia, here we report the first local occurrence of verlotiorum Lamotte. from Gilgit-Baltistan region of Pakistan by investigating its geographical distribution and phylogenetic analysis. To date, we have observed the species in stony landscapes of Ghizer district of Gilgit-Baltistan. Phylogenetic analysis of Northeastern Pakistani A. verlotiorum with maximum likelihood approach using its internal transcribed spacer (ITS) and external transcribed spacer (ETS) of nuclear ribosomal DNA (nrDNA) sequences showed its resemblance with other Artemisia species reported from different parts of the world. This species needs to be included in the rare plant species list in the flora of Pakistan and immediate conservative approaches should be adopted to impede its extinction from the country.

scholarly journals An early bothremydid (Testudines, Pleurodira) from the Late Cretaceous (Cenomanian) of Utah, North America

PeerJ ◽  
2016 ◽  
Vol 4 ◽  
pp. e2502 ◽  
Author(s):  
Walter G. Joyce ◽  
Tyler R. Lyson ◽  
James I. Kirkland
Keyword(s):  
Phylogenetic Analysis ◽  
Late Cretaceous ◽  
New Taxon ◽  
The Novel ◽  
Depositional Settings ◽  
Near Shore ◽  
Phylogenetic Hypotheses ◽  
North And South America ◽  
North And South ◽  
Early Late

BackgroundBothremydidae is a clade of extinct pleurodiran turtles known from the Cretaceous to Paleogene of Africa, Europe, India, Madagascar, and North and South America. The group is most diverse during the Late Cretaceous to Paleogene of Africa. Little is known, however, about the early evolution of the group.MethodsWe here figure and describe a fossil turtle from early Late Cretaceous deposits exposed at MacFarlane Mine in Cedar Canyon, southwestern Utah, USA. The sediments associated with the new turtle are utilized to infer its stratigraphic provenience and the depositional settings in which it was deposited. The fossil is compared to previously described fossil pleurodires, integrated into a modified phylogenetic analysis of pelomedusoid turtles, and the biogeography of bothremydid turtles is reassessed. In light of the novel phylogenetic hypotheses, six previously established taxon names are converted to phylogenetically defined clade names to aid communication.ResultsThe new fossil turtle can be inferred with confidence to have originated from a brackish water facies within the late Cenomanian Culver Coal Zone of the Naturita Formation. The fossil can be distinguished from all other previously described pleurodires and is therefore designated as a new taxon,Paiutemys tibertgen. et. sp. nov. Phylogenetic analysis places the new taxon as sister to the EuropeanPolysternon provinciale,Foxemys trabantiandFoxemys mechinorumat the base of Bothremydinae. Biogeographic analysis suggests that bothremydids originated as continental turtles in Gondwana, but that bothremydines adapted to near-shore marine conditions and therefore should be seen as having a circum-Atlantic distribution.

scholarly journals Review of the Species of New World Erythroneurini (Hemiptera: Cicadellidae: Typhlocybinae)

2008 ◽  
Vol 38 (1-6) ◽  
pp. 129-175
Author(s):  
Christopher H. Dietrich ◽  
Dmitry A. Dmitriev
Keyword(s):  
Phylogenetic Analysis ◽  
New Species ◽  
South America ◽  
New World ◽  
Morphological Characters ◽  
Amazon Region ◽  
New Synonyms ◽  
Branch Support ◽  
North And South America ◽  
North And South

The 35 previously described species (including 4 junior synonyms) of the New World erythroneurine leafhopper genus Zyginama are reviewed and descriptions are provided for 43 new species, 2 from U.S.A., 26 from Mexico, 1 from Panama, and 14 from the Amazon region of South America. The following new synonyms are recognized: Z. aucta (McAtee) equals Erythroneura bilocularis Van Duzee, syn. n., and E. inclita Beamer, syn. n.; Z. nicholi (Beamer) equals E. canyonensis Beamer, syn. n., and E. ales Beamer, syn. n. Separate keys are provided for identification of males from North and South America, all known species are illustrated, and data on their distributions are summarized. Phylogenetic analysis of 40 morphological characters of the 71 species for which males are known yielded a reasonably well resolved estimate of relationships among the included species, but branch support was low overall.

New Distribution Records of Reptant Decapod Crustacea, Including Descriptions of Three New Species of Pagurus, from the Waters Adjacent to British Columbia

1971 ◽  
Vol 28 (10) ◽  
pp. 1527-1544 ◽  
Author(s):  
Josephine F. L. Hart
Keyword(s):  
British Columbia ◽  
New Species ◽  
Hermit Crabs ◽  
Decapod Crustacea ◽  
Three New Species ◽  
Petrolisthes Cinctipes ◽  
First Time ◽  
North And South ◽  
New Distribution

Three hermit crabs, Pagurus caurinus, P. quaylei, and P. stevensae, from British Columbia are described as new. Calastacus quinqueseriatus Rathbun, Paguristes ulreyi Schmitt, Pagurus cavimanus (Miers), P. samuelis (Stimpson), Parapagurus pilosimanus Smith, Munidopsis quadrata Faxon, and Chionoecetes tanneri Rathbun have not been recorded from the area between 48° and 55°N and 123° and 135°W, and also show considerable extensions of the known ranges. Within the confines of the same area, Callianassa gigas Dana, Paguristes turgidus (Stimpson), Pagurus cornutus (Benedict), P. hemphilli (Benedict), Orthopagurus minimus (Holmes), Petrolisthes cinctipes (Randall), Sceleroplax granulata Rathbun, Pinnotheres pugettensis Holmes, P. taylori Rathbun, and Planes marinus Rathbun are reported with extensions to known ranges. Pagurus capillatus (Benedict), P. tanneri (Benedict), Paralomis verrilli (Benedict), and Lithodes couesi Benedict are recorded, apparently for the first time from British Columbia, although known from both north and south of this area.

scholarly journals Phylogenetic Analysis and Molecular Diversity of Capsicum Based on rDNA-ITS Region

Horticulturae ◽  
2020 ◽  
Vol 6 (4) ◽  
pp. 87
Author(s):  
Kumpei Shiragaki ◽  
Shuji Yokoi ◽  
Takahiro Tezuka
Keyword(s):  
Genetic Diversity ◽  
Phylogenetic Analysis ◽  
Wild Species ◽  
Morphological Characteristics ◽  
Its Region ◽  
Internal Transcribed Spacers ◽  
Nuclear Ribosomal Dna ◽  
Rdna Its ◽  
Rdna Its Region ◽  
Genus Capsicum

The genus Capsicum is comprised of 5 domesticated and more than 30 wild species. The region of nuclear ribosomal DNA internal transcribed spacers (rDNA-ITS) has widely been used for species identification, but has rarely been used in Capsicum. In this study, the evaluation of genetic diversity and a phylogenetic analysis were conducted using rDNA-ITS of 28 Capsicum accessions, including five domesticated and two wild species. We surveyed six conventional keys of domesticated species and another five traits in Capsicum accessions. Specific morphological characteristics were found in C. annuum, C. baccatum, and C.pubescens. Three subclones of each accession were sequenced, and rDNA-ITS polymorphisms were detected in all accessions excluding C. annuum, suggesting that incomplete concerted evolution occurred in rDNA-ITS of Capsicum. The genetic diversity was evaluated using nucleotide polymorphism and diversity. C. annuum had the lowest genetic diversity of all species in this study. The phylogenetic tree formed a species-specific clade for C. annuum, C. baccatum, and C. pubescens. The C. chinense clade existed in the C. frutescens clade, implying that it was a cultivated variant of C. frutescens. C. chacoense likely belonged to the C. baccatum complex according to its morphologic and genetic features. This study indicated that the rDNA-ITS region can be used for simple identification of domesticated Capsicum species.

A phylogenetic analysis of Epimedium (Berberidaceae) based on nuclear ribosomal DNA sequences

2005 ◽  
Vol 35 (1) ◽  
pp. 287-291 ◽  
Author(s):  
Ye Sun ◽  
Kwok-Pui Fung ◽  
Ping-Chung Leung ◽  
Pang-Chui Shaw
Keyword(s):  
Phylogenetic Analysis ◽  
Ribosomal Dna ◽  
Dna Sequences ◽  
Nuclear Ribosomal Dna

scholarly journals The Location-Scale Mixture Exponential Power Distribution: A Bayesian and Maximum Likelihood Approach

2012 ◽  
Vol 2012 ◽  
pp. 1-14
Author(s):  
Z. Rahnamaei ◽  
N. Nematollahi ◽  
R. Farnoosh
Keyword(s):  
Maximum Likelihood ◽  
Power Distribution ◽  
Real Data ◽  
Scale Mixture ◽  
Exponential Power Distribution ◽  
Likelihood Approach ◽  
Slash Distribution ◽  
Exponential Power ◽  
Mean Square Errors ◽  
New Distribution

We introduce an alternative skew-slash distribution by using the scale mixture of the exponential power distribution. We derive the properties of this distribution and estimate its parameter by Maximum Likelihood and Bayesian methods. By a simulation study we compute the mentioned estimators and their mean square errors, and we provide an example on real data to demonstrate the modeling strength of the new distribution.

Genetic divergence and phylogenetic analysis of genus Jatropha based on nuclear ribosomal DNA ITS sequence

2008 ◽  
Vol 36 (7) ◽  
pp. 1929-1935 ◽  
Author(s):  
D. V. N. Sudheer Pamidimarri ◽  
Balaji Chattopadhyay ◽  
Muppala P. Reddy
Keyword(s):  
Phylogenetic Analysis ◽  
Ribosomal Dna ◽  
Genetic Divergence ◽  
Nuclear Ribosomal Dna ◽  
Its Sequence

scholarly journals Phylogenetic analysis of the genus Conringia Heist. Ex Fabr. (Brassicaceae) in Turkey based on nuclear (nrITS) and chloroplast (trnL-F) DNA sequences

2021 ◽  
Vol 13 (3) ◽  
pp. 11034
Author(s):  
Emre SEVINDIK ◽  
Melike AYDOGAN ◽  
Mehmet Y. PAKSOY
Keyword(s):  
Phylogenetic Analysis ◽  
Ribosomal Dna ◽  
Dna Sequences ◽  
Genomic Dna ◽  
Nuclear Ribosomal Dna ◽  
Neighbor Joining ◽  
F Region ◽  
Brassicaceae Species ◽  
Nj Tree ◽  
Brassicaceae Family

In this study, phylogenetic analysis of Turkish Conringia (Brassicaceae) species was conducted based on nuclear ribosomal DNA (nrITS) and chloroplast DNA (trnL-F) sequences. In addition, the relationships between the sequences of some Brassicaceae family species retrieved from NCBI, and Conringia species were documented. All of the plant specimens were collected at their flowering and vegetation periods from different regions of Turkey, and brought to the laboratory. Total genomic DNA was extracted using the GeneMark kit. In PCR analyses, ITS4 and ITS5A primers were used for the amplification of the nrITS region, while the trnLe and trnLf primers were used for the cpDNA trnL-F region. The DNA sequences obtained were then edited using BioEdit and FinchTV, and analyzed using MEGA 6.0 software. Neighbor joining (NJ) and bootstrap trees were constructed in order to identify the relationships among Conringia taxa. The nrITS sequences ranged between 573 and 672 nucleotides, while the trnL-F sequences ranged between 346 and 764 nucleotides. The divergence values of nrITS sequences differed between 0.177 and 0.00 and divergence values of trnL-F sequences differed between 0.902 and 0.00. NJ tree generated using nrITS and trnL-F sequences consisted of two clades. In trees generated with both the nrITS and trnL-F sequences, C. orientalis, C. grandiflora and C. austriaca appeared within the same group. In addition, according to the phylogenetic analysis results obtained with other Brassicaceae species, it is revealed that the Conringia genus is polyphyletic.

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