Non-allelic gene interactions in a population of maize derived from a cross of two inbred lines

1960 ◽  
Author(s):  
Angus Hillyard Hyer
Author(s):  
Toshiyuki Sakai ◽  
Akira Abe ◽  
Motoki Shimizu ◽  
Ryohei Terauchi

Abstract Characterizing epistatic gene interactions is fundamental for understanding the genetic architecture of complex traits. However, due to the large number of potential gene combinations, detecting epistatic gene interactions is computationally demanding. A simple, easy-to-perform method for sensitive detection of epistasis is required. Due to their homozygous nature, use of recombinant inbred lines (RILs) excludes the dominance effect of alleles and interactions involving heterozygous genotypes, thereby allowing detection of epistasis in a simple and interpretable model. Here, we present an approach called RIL-StEp (recombinant inbred lines stepwise epistasis detection) to detect epistasis using single nucleotide polymorphisms in the genome. We applied the method to reveal epistasis affecting rice (Oryza sativa) seed hull color and leaf chlorophyll content and successfully identified pairs of genomic regions that presumably control these phenotypes. This method has the potential to improve our understanding of the genetic architecture of various traits of crops and other organisms.


2020 ◽  
Author(s):  
Toshiyuki Sakai ◽  
Akira Abe ◽  
Motoki Shimizu ◽  
Ryohei Terauchi

SummaryStudying epistatic gene interactions is important in understanding genetic architecture of complex traits in organisms. However, due to an enormous number of gene combinations to be analyzed, detection of epistatic gene-gene interactions has been computationally demanding. Here, we show a simple approach RIL-StEp, specialized to Recombinant Inbred Lines (RILs), to study epistasis using single nucleotide polymorphisms (SNPs) information of the genome. We applied the method to reveal epistasis affecting rice seed hull color phenotype, and successfully identified gene pairs that presumably control seed hull color. This method has a potential to enhancing our understanding of genetic architecture of various traits.


Plant Disease ◽  
2001 ◽  
Vol 85 (7) ◽  
pp. 798-800 ◽  
Author(s):  
M. L. Carson

Phaeosphaeria leaf spot is a potentially important maize disease that has recently appeared in the continental United States in winter breeding nurseries in southern Florida. Inbred lines re lated to B73 are particularly susceptible to Phaeosphaeria leaf spot, whereas inbreds related to Mo17 are highly resistant. The inheritance of resistance to Phaeosphaeria leaf spot was studied in the parents, F1, F2, and backcross generations derived from the cross B73 × Mo17. A replicated experiment was conducted over two winter nursery seasons in a southern Florida nursery Individual plants in plots were evaluated for Phaeosphaeria leaf spot severity (0 to 9 scale) at the mid-dent stage of kernel development. Variation in segregating generations appeared continuous, so generation mean analysis was used. Additive and, to a lesser extent, dominance gene action were determined to play a role in the inheritance of reaction to Phaeosphaeria leaf spot There was no evidence for epistatic gene interactions. Heritabilities (both narrow and broad sense) were high (0.70 to 0.85) and the magnitude of genotype × environment interactions was low. Estimates of the number of effective factors (genes) involved in the inheritance of resistance ranged from three to four. Selection should be highly effective in developing inbred lines with adequate levels of resistance to Phaeosphaeria leaf spot.


2010 ◽  
Vol 80 (45) ◽  
pp. 319-329 ◽  
Author(s):  
Allyson A. West ◽  
Marie A. Caudill

Folate and choline are water-soluble micronutrients that serve as methyl donors in the conversion of homocysteine to methionine. Inadequacy of these nutrients can disturb one-carbon metabolism as evidenced by alterations in circulating folate and/or plasma homocysteine. Among common genetic variants that reside in genes regulating folate absorptive and metabolic processes, homozygosity for the MTHFR 677C > T variant has consistently been shown to have robust effects on status markers. This paper will review the impact of genetic variants in folate-metabolizing genes on folate and choline bioefficacy. Nutrient-gene and gene-gene interactions will be considered along with the need to account for these genetic variants when updating dietary folate and choline recommendations.


2005 ◽  
Vol 38 (05) ◽  
Author(s):  
D Salyakina ◽  
EB Binder ◽  
M Ising ◽  
M Uhr ◽  
S Lucae ◽  
...  

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