maize inbred lines
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BMC Genomics ◽  
2022 ◽  
Vol 23 (1) ◽  
Author(s):  
Sirlene Viana de Faria ◽  
Leandro Tonello Zuffo ◽  
Wemerson Mendonça Rezende ◽  
Diego Gonçalves Caixeta ◽  
Hélcio Duarte Pereira ◽  
...  

Abstract Background The characterization of genetic diversity and population differentiation for maize inbred lines from breeding programs is of great value in assisting breeders in maintaining and potentially increasing the rate of genetic gain. In our study, we characterized a set of 187 tropical maize inbred lines from the public breeding program of the Universidade Federal de Viçosa (UFV) in Brazil based on 18 agronomic traits and 3,083 single nucleotide polymorphisms (SNP) markers to evaluate whether this set of inbred lines represents a panel of tropical maize inbred lines for association mapping analysis and investigate the population structure and patterns of relationships among the inbred lines from UFV for better exploitation in our maize breeding program. Results Our results showed that there was large phenotypic and genotypic variation in the set of tropical maize inbred lines from the UFV maize breeding program. We also found high genetic diversity (GD = 0.34) and low pairwise kinship coefficients among the maize inbred lines (only approximately 4.00 % of the pairwise relative kinship was above 0.50) in the set of inbred lines. The LD decay distance over all ten chromosomes in the entire set of maize lines with r2 = 0.1 was 276,237 kb. Concerning the population structure, our results from the model-based STRUCTURE and principal component analysis methods distinguished the inbred lines into three subpopulations, with high consistency maintained between both results. Additionally, the clustering analysis based on phenotypic and molecular data grouped the inbred lines into 14 and 22 genetic divergence clusters, respectively. Conclusions Our results indicate that the set of tropical maize inbred lines from UFV maize breeding programs can comprise a panel of tropical maize inbred lines suitable for a genome-wide association study to dissect the variation of complex quantitative traits in maize, mainly in tropical environments. In addition, our results will be very useful for assisting us in the assignment of heterotic groups and the selection of the best parental combinations for new breeding crosses, mapping populations, mapping synthetic populations, guiding crosses that target highly heterotic and yielding hybrids, and predicting untested hybrids in the public breeding program UFV.


Agriculture ◽  
2021 ◽  
Vol 12 (1) ◽  
pp. 11
Author(s):  
Yonghui Lao ◽  
Yuan Dong ◽  
Yaqin Shi ◽  
Yahui Wang ◽  
Shutu Xu ◽  
...  

Drought is one of the most prevailing abiotic stresses affecting the growth, development, and productivity of maize. Knowledge of drought tolerance could help in maize improvement. However, less research has been done to comprehensively evaluate the drought tolerance of maize inbred lines. We used 27 elite maize inbred lines selected from Shaan A group and Shaan B group breeding populations to estimate their drought tolerance in 3 years 2 locations under normal field conditions and low irrigation. Using principal component analysis (PCA) and GGE biplots, all inbred lines, including the controls, could be divided into four types. Ten lines could be categorized as the high-yield drought-resistant type (‘KB081’, ‘KA105’, ‘KB417’, ‘KB215’, ‘KB-7’, ‘2013KB-37’, ‘KA203’, ‘2012KA-34’, ‘KA225’, and ‘91227’) because of their stability and wide adaptability. Compared with the controls, a large proportion of the inbred lines selected from Shaan A and Shaan B breeding populations demonstrated higher drought resistance. Our results suggest that multi-year drought screening can be used as a tool to improve the drought resistance of maize inbred lines and provide a scientific basis for making better use of the Shaan A and Shaan B maize inbred lines to breed new varieties and to identify existing drought-resistant maize varieties.


2021 ◽  
Vol 11 (1) ◽  
Author(s):  
A. E. Stanley ◽  
A. Menkir ◽  
B. Ifie ◽  
A. A. Paterne ◽  
N. N. Unachukwu ◽  
...  

AbstractStriga hermonthica is a widespread, destructive parasitic plant that causes substantial yield loss to maize productivity in sub-Saharan Africa. Under severe Striga infestation, yield losses can range from 60 to 100% resulting in abandonment of farmers’ lands. Diverse methods have been proposed for Striga management; however, host plant resistance is considered the most effective and affordable to small-scale famers. Thus, conducting a genome-wide association study to identify quantitative trait nucleotides controlling S. hermonthica resistance and mining of relevant candidate genes will expedite the improvement of Striga resistance breeding through marker-assisted breeding. For this study, 150 diverse maize inbred lines were evaluated under Striga infested and non-infested conditions for two years and genotyped using the genotyping-by-sequencing platform. Heritability estimates of Striga damage ratings, emerged Striga plants and grain yield, hereafter referred to as Striga resistance-related traits, were high under Striga infested condition. The mixed linear model (MLM) identified thirty SNPs associated with the three Striga resistance-related traits based on the multi-locus approaches (mrMLM, FASTmrMLM, FASTmrEMMA and pLARmEB). These SNPs explained up to 14% of the total phenotypic variation. Under non-infested condition, four SNPs were associated with grain yield, and these SNPs explained up to 17% of the total phenotypic variation. Gene annotation of significant SNPs identified candidate genes (Leucine-rich repeats, putative disease resistance protein and VQ proteins) with functions related to plant growth, development, and defense mechanisms. The marker-effect prediction was able to identify alleles responsible for predicting high yield and low Striga damage rating in the breeding panel. This study provides valuable insight for marker validation and deployment for Striga resistance breeding in maize.


Author(s):  
Odilon Gayosso Barragán ◽  
Griselda Chávez-Aguilar ◽  
José Angel Marroquín-Morales ◽  
Alfonso López-Benítez

Objective: To analyze the genetic diversity (agronomic attributes, forage yield, and fiber content) of 100 maize inbred lines and to identify genotypes with potential for the breeding of plants with the said traits. Design/methodology/approach: One-hundred maize inbred lines were evaluated in two environments, in a 10 x 10 complete block experimental design, with two repetitions. Days to male flowering, days to female flowering, ear height, plant height, stem diameter, green forage yield, neutral detergent fiber, and acid detergent fiber data were recorded. Results: Significant differences were observed in the environmental sources of variation and genotypes for all the traits evaluated. The first four components account for 81% of the total variation observed and the first two account for 66% of the variation. The variables which have the highest absolute value and which strongly influence the dispersion of the genotypes, as well as the formation of groups, were: plant height, forage yield, and acid detergent fiber (component one) and days to female flowering and days to male flowering (component two). Consequently, the genotypes were dispersed in four groups. Study limitations/implications: It was not possible to conduct genetic diversity studies using molecular markers. Findings/conclusions: The grouping pattern of inbred lines shows the genetic diversity present; this can be an important tool in genetic improvement programs aimed at obtaining hybrids with specific characteristics.


2021 ◽  
Vol 4 (3) ◽  
pp. 286-304
Author(s):  
Lemi Mideksa Yadesa ◽  
Sentayehu Alamerew ◽  
Berhanu Tadesse

In spite of the importance of quality protein maize to alleviate protein deficiency, almost all maize varieties cultivated in Ethiopia are normal maize varieties, which are devoid of lysine and tryptophan. Perusing the combining ability of QPM inbred for grain yield and its components is vital to design appropriate breeding strategies for the development of nutritionally enhanced maize cultivars. A line x tester analysis involving 36 crosses generated by crossing 9  elite maize inbred lines with 4 testers were evaluated for different desirable agronomic traits during the 2019 main season at BNMRC and JARC. The experiment was conducted using alpha lattice design with 3 replications. The objectives were to determine the combining ability of quality protein maize inbred lines, adapted to mid altitude agroecology of Ethiopia for agronomic traits. The crosses were evaluated in alpha lattice design replicated 3 times. Analyses of variances showed significant mean squares due to crosses for almost all the traits studied. GCA mean squares due to lines and testers were significant (P<0.05 or P<0.01) for most studied traits. SCA mean squares were also significant for most attributes across locations. The comparative importance of GCA and SCA variances observed in the current study for most studied traits indicated the preponderance of additive genetic variance in governing these attributes. Only L3 was the best general combiner for grain yield. Inbred line L3, for days to anthesis and L5 for days to silking had negative and significant GCA effects. L5 and L6 displayed negative and significant GCA effects for plant and ear height. Crosses, L2xT4, L3xT4, L4xT4, L5xT2, L6xT3, L7xT2, L9xT1 and L9xT4 were good specific combiners for grain yield. In general, these genotypes help as a source of promising alleles that could be used for forthcoming breeding work in the development of quality protein maize cultivars with desirable traits.


2021 ◽  
Vol 12 (11) ◽  
pp. 1205-1211
Author(s):  
M. E. M. Abd El-Azeem ◽  
RIZK ALY ◽  
W. M. El Sayed ◽  
Noura Hassan

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