scholarly journals Coarse-Grained Density Functional Theory Predictions via Deep Kernel Learning

Author(s):  
Nicholas Jackson ◽  
Ganesh Sivaraman

Scalable electronic predictions are critical for soft materials design. Recently, the Electronic Coarse-Graining (ECG) method was introduced to renormalize all-atom quantum chemical (QC) predictions to coarse-grained (CG) molecular representations using deep neural networks (DNN). While DNN can learn complex representations that prove challenging for traditional kernel-based methods, they are susceptible to overfitting and the overconfidence of uncertainty estimations. Here, we develop ECG within the GPU-accelerated Deep Kernel Learning (DKL) framework to enable CG QC predictions of a conjugated oligomer using range-separated hybrid density functional theory. DKL-ECG provides accurate reproduction of QC electronic properties in conjunction with prediction uncertainties that facilitate efficient training over multiple temperature data sets via active learning. We show that while active learning algorithms enable efficient sampling of a more diverse configurational space relative to random sampling, the predictive accuracy of DKL-ECG models is effectively identical across all active learning methodologies employed. We attribute this result to the low conformational barriers of our test molecule and the redundant sampling of configurations induced by Boltzmann sampling, even for distinct temperature ensembles.

2020 ◽  
Author(s):  
Justin S. Smith ◽  
Roman Zubatyuk ◽  
Benjamin T. Nebgen ◽  
Nicholas Lubbers ◽  
Kipton Barros ◽  
...  

<p>Maximum diversification of data is a central theme in building generalized and accurate machine learning (ML) models. In chemistry, ML has been used to develop models for predicting molecular properties, for example quantum mechanics (QM) calculated potential energy surfaces and atomic charge models. The ANI-1x and ANI-1ccx ML-based eneral-purpose potentials for organic molecules were developed through active learning; an automated data diversification process. Here, we describe the ANI-1x and ANI-1ccx data sets. To demonstrate data set diversity, we visualize them with a dimensionality reduction scheme, and contrast against existing data sets. The ANI-1x data set contains multiple QM properties from 5M density functional theory calculations, while the ANI-1ccx data set contains 500k data points obtained with an accurate CCSD(T)/CBS extrapolation. Approximately 14 million CPU core-hours were expended to generate this data. Multiple QM properties from density functional theory and coupled cluster are provided: energies, atomic forces, multipole moments, atomic charges, and more. We provide this data to the community to aid research and development of ML models for chemistry.</p>


Soft Matter ◽  
2014 ◽  
Vol 10 (18) ◽  
pp. 3229 ◽  
Author(s):  
Martin Turesson ◽  
Ryan Szparaga ◽  
Ke Ma ◽  
Clifford E. Woodward ◽  
Jan Forsman

2020 ◽  
Vol 7 (1) ◽  
Author(s):  
Justin S. Smith ◽  
Roman Zubatyuk ◽  
Benjamin Nebgen ◽  
Nicholas Lubbers ◽  
Kipton Barros ◽  
...  

2012 ◽  
Vol 8 (4) ◽  
pp. 1393-1408 ◽  
Author(s):  
Laura J. Douglas Frink ◽  
Amalie L. Frischknecht ◽  
Michael A. Heroux ◽  
Michael L. Parks ◽  
Andrew G. Salinger

Crystals ◽  
2019 ◽  
Vol 9 (5) ◽  
pp. 243 ◽  
Author(s):  
Qing Peng ◽  
Guangyu Wang ◽  
Gui-Rong Liu ◽  
Suvranu De

There are a large number of materials with mild stiffness, which are not as soft as tissues and not as strong as metals. These semihard materials include energetic materials, molecular crystals, layered materials, and van der Waals crystals. The integrity and mechanical stability are mainly determined by the interactions between instantaneously induced dipoles, the so called London dispersion force or van der Waals force. It is challenging to accurately model the structural and mechanical properties of these semihard materials in the frame of density functional theory where the non-local correlation functionals are not well known. Here, we propose a van der Waals density functional named vdW-DFq to accurately model the density and geometry of semihard materials. Using β -cyclotetramethylene tetranitramine as a prototype, we adjust the enhancement factor of the exchange energy functional with generalized gradient approximations. We find this method to be simple and robust over a wide tuning range when calibrating the functional on-demand with experimental data. With a calibrated value q = 1.05 , the proposed vdW-DFq method shows good performance in predicting the geometries of 11 common energetic material molecular crystals and three typical layered van der Waals crystals. This success could be attributed to the similar electronic charge density gradients, suggesting a wide use in modeling semihard materials. This method could be useful in developing non-empirical density functional theories for semihard and soft materials.


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