scholarly journals Multiscale Computational Modeling of Vascular Adaptation: A Systems Biology Approach Using Agent-Based Models

Author(s):  
Anna Corti ◽  
Monika Colombo ◽  
Francesco Migliavacca ◽  
Jose Felix Rodriguez Matas ◽  
Stefano Casarin ◽  
...  

The widespread incidence of cardiovascular diseases and associated mortality and morbidity, along with the advent of powerful computational resources, have fostered an extensive research in computational modeling of vascular pathophysiology field and promoted in-silico models as a support for biomedical research. Given the multiscale nature of biological systems, the integration of phenomena at different spatial and temporal scales has emerged to be essential in capturing mechanobiological mechanisms underlying vascular adaptation processes. In this regard, agent-based models have demonstrated to successfully embed the systems biology principles and capture the emergent behavior of cellular systems under different pathophysiological conditions. Furthermore, through their modular structure, agent-based models are suitable to be integrated with continuum-based models within a multiscale framework that can link the molecular pathways to the cell and tissue levels. This can allow improving existing therapies and/or developing new therapeutic strategies. The present review examines the multiscale computational frameworks of vascular adaptation with an emphasis on the integration of agent-based approaches with continuum models to describe vascular pathophysiology in a systems biology perspective. The state-of-the-art highlights the current gaps and limitations in the field, thus shedding light on new areas to be explored that may become the future research focus. The inclusion of molecular intracellular pathways (e.g., genomics or proteomics) within the multiscale agent-based modeling frameworks will certainly provide a great contribution to the promising personalized medicine. Efforts will be also needed to address the challenges encountered for the verification, uncertainty quantification, calibration and validation of these multiscale frameworks.




2009 ◽  
Vol 1 (2) ◽  
pp. 159-171 ◽  
Author(s):  
Gary An ◽  
Qi Mi ◽  
Joyeeta Dutta‐Moscato ◽  
Yoram Vodovotz


Author(s):  
Claudio Cioffi-Revilla

Agent-based computational modeling (ABM, for short) is a formal and supplementary methodological approach used in international relations (IR) theory and research, based on the general ABM paradigm and computational methodology as applied to IR phenomena. ABM of such phenomena varies according to three fundamental dimensions: scale of organization—spanning foreign policy, international relations, regional systems, and global politics—as well as by geospatial and temporal scales. ABM is part of the broader complexity science paradigm, although ABMs can also be applied without complexity concepts. There have been scores of peer-reviewed publications using ABM to develop IR theory in recent years, based on earlier pioneering work in computational IR that originated in the 1960s that was pre-agent based. Main areas of theory and research using ABM in IR theory include dynamics of polity formation (politogenesis), foreign policy decision making, conflict dynamics, transnational terrorism, and environment impacts such as climate change. Enduring challenges for ABM in IR theory include learning the applicable ABM methodology itself, publishing sufficiently complete models, accumulation of knowledge, evolving new standards and methodology, and the special demands of interdisciplinary research, among others. Besides further development of main themes identified thus far, future research directions include ABM applied to IR in political interaction domains of space and cyber; new integrated models of IR dynamics across domains of land, sea, air, space, and cyber; and world order and long-range models.



2005 ◽  
Vol 28 (2) ◽  
pp. 289-289 ◽  
Author(s):  
Rui Mata ◽  
Andreas Wilke ◽  
Peter M. Todd

Evolutionary psychologists should go beyond research on individual differences in attitudes and focus more on detailed models of psychological mechanisms. We argue for complementing attitude research with agent-based computational modeling of mate choice. Agent-based models require detailed specification of individual choice mechanisms that can be evaluated in terms of both their psychological plausibility and the population-level outcomes they produce.



2017 ◽  
Author(s):  
Ben Marwick

This volume is collection of papers emerging from a forum at the 2014 SAA meetings. The papers are motivated by the question of how we can measure and interpret uncertainty in quantitative archaeological models, specifically by using sensitivity analysis. The types of models discussed in this volume include geo-referenced models of past environments to infer hunter-gather land use, and agent-based models of cultural transmission processes. They explore various sources of uncertainty, and implement sensitivity analysis by assessing how the output of the models varies according to changes in the inputs. The motivation for this collection is the editors' observations that archaeologists lack a discipline-based protocol for testing models.



Author(s):  
Marcia R. Friesen ◽  
Richard Gordon ◽  
Robert D. McLeod

In this chapter, the authors examine manifestations of emergence or apparent emergence in agent based social modeling and simulation, and discuss the inherent challenges in building real world models and in defining, recognizing and validating emergence within these systems. The discussion is grounded in examples of research on emergence by others, with extensions from within our research group. The works cited and built upon are explicitly chosen as representative samples of agent-based models that involve social systems, where observation of emergent behavior is a sought-after outcome. The concept of the distinctiveness of social from abiotic emergence in terms of the use of global parameters by agents is introduced.



Author(s):  
Nicola Cannata ◽  
Flavio Corradini ◽  
Emanuela Merelli ◽  
Luca Tesei


AIP Advances ◽  
2021 ◽  
Vol 11 (3) ◽  
pp. 035133
Author(s):  
Miles Medina ◽  
Ray Huffaker ◽  
Rafael Muñoz-Carpena ◽  
Gregory Kiker


Author(s):  
Brian L. Heath ◽  
Raymond R. Hill

Models and simulations have been widely used as a means to predict the performance of systems. Agentbased modeling and agent distillations have recently found tremendous success particularly in analyzing ground force employment and doctrine. They have also seen wide use in the social sciences modeling a plethora of real-life scenarios. The use of these models always raises the question of whether the model is correctly encoded (verified) and accurately or faithfully represents the system of interest (validated). The topic of agent-based model verification and validation has received increased interest. This chapter traces the historical roots of agent-based modeling. This review examines the modern influences of systems thinking, cybernetics as well as chaos and complexity on the growth of agent-based modeling. The chapter then examines the philosophical foundations of simulation verification and validation. Simulation verification and validation can be viewed from two quite different perspectives: the simulation philosopher and the simulation practitioner. Personnel from either camp are typically unaware of the other camp’s view of simulation verification and validation. This chapter examines both camps while also providing a survey of the literature and efforts pertaining to the verification and validation of agent-based models. The chapter closes with insights pertaining to agent-based modeling, the verification and validation of agent-based models, and potential directions for future research.



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