emergent behavior
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2022 ◽  
Vol 15 ◽  
Author(s):  
Heather M. Barber ◽  
Maria F. Ali ◽  
Sarah Kucenas

Tiling is a developmental process where cell populations become evenly distributed throughout a tissue. In this review, we discuss the developmental cellular tiling behaviors of the two major glial populations in the central nervous system (CNS)—oligodendrocyte progenitor cells (OPCs) and astrocytes. First, we discuss OPC tiling in the spinal cord, which is comprised of the three cellular behaviors of migration, proliferation, and contact-mediated repulsion (CMR). These cellular behaviors occur simultaneously during OPC development and converge to produce the emergent behavior of tiling which results in OPCs being evenly dispersed and occupying non-overlapping domains throughout the CNS. We next discuss astrocyte tiling in the cortex and hippocampus, where astrocytes migrate, proliferate, then ultimately determine their exclusive domains by gradual removal of overlap rather than sustained CMR. This results in domains that slightly overlap, allowing for both exclusive control of “synaptic islands” and astrocyte-astrocyte communication. We finally discuss the similarities and differences in the tiling behaviors of these glial populations and what remains unknown regarding glial tiling and how perturbations to this process may impact injury and disease.


Soft Matter ◽  
2022 ◽  
Author(s):  
Shannon E. Moran ◽  
Isaac R. Bruss ◽  
Philip Shoenhofer ◽  
Sharon C Glotzer

Studies of active particle systems have demonstrated that particle anisotropy can impact the collective behavior of a system. However, systems studied to date have served as one-off demonstrations of concept,...


2021 ◽  
Vol 118 (52) ◽  
pp. e2117107118
Author(s):  
Fereshteh L. Memarian ◽  
Joseph D. Lopes ◽  
Fabian Jan Schwarzendahl ◽  
Madhuvanthi Guruprasad Athani ◽  
Niranjan Sarpangala ◽  
...  

Dynamic lane formation and long-range active nematic alignment are reported using a geometry in which kinesin motors are directly coupled to a lipid bilayer, allowing for in-plane motor diffusion during microtubule gliding. We use fluorescence microscopy to image protein distributions in and below the dense two-dimensional microtubule layer, revealing evidence of diffusion-enabled kinesin restructuring within the fluid membrane substrate as microtubules collectively glide above. We find that the lipid membrane acts to promote filament–filament alignment within the gliding layer, enhancing the formation of a globally aligned active nematic state. We also report the emergence of an intermediate, locally ordered state in which apolar dynamic lanes of nematically aligned microtubules migrate across the substrate. To understand this emergent behavior, we implement a continuum model obtained from coarse graining a collection of self-propelled rods, with propulsion set by the local motor kinetics. Tuning the microtubule and kinesin concentrations as well as active propulsion in these simulations reveals that increasing motor activity promotes dynamic nematic lane formation. Simulations and experiments show that, following fluid bilayer substrate mediated spatial motor restructuring, the total motor concentration becomes enriched below the microtubule lanes that they drive, with the feedback leading to more dynamic lanes. Our results have implications for membrane-coupled active nematics in vivo as well as for engineering dynamic and reconfigurable materials where the structural elements and power sources can dynamically colocalize, enabling efficient mechanical work.


Systems ◽  
2021 ◽  
Vol 9 (4) ◽  
pp. 89
Author(s):  
Alejandro Hernandez ◽  
Anthony Pollman

This paper describes an approach to blend several qualitative and quantitative methods to establish the boundaries of complex systems in terms of uncontrollable, non-numeric variables. Decision makers increasingly encounter layered, multidimensional, interconnected issues that contain unknown unknowns, vast uncertainties, and ill-defined lines of demarcation between the beginning and the end of the problem. The inexactness of boundaries in a systems problem is a result of not knowing important variables, existence of uncontrollable variables, and near-uncountable significant interactions among the variables. Furthermore, complexities and systems challenges arise from unexpected emergent behavior(s) that are often the primary concerns of systems engineers. The ability to investigate uncontrollable variables and their interactions with the system of interest is a critical step for bounding the system problem and defining the solution space. Thus, this paper focuses on developing a means for systematically examining these variables. By incorporating scenario-based computer simulations, scenario discretization, and customized designs of experiments, the authors offer systems engineers and scientists an approach for defining a viable solution space of a complex problem by developing constraint equations from uncontrollable, non-numeric variables.


Author(s):  
Anna Corti ◽  
Monika Colombo ◽  
Francesco Migliavacca ◽  
Jose Felix Rodriguez Matas ◽  
Stefano Casarin ◽  
...  

The widespread incidence of cardiovascular diseases and associated mortality and morbidity, along with the advent of powerful computational resources, have fostered an extensive research in computational modeling of vascular pathophysiology field and promoted in-silico models as a support for biomedical research. Given the multiscale nature of biological systems, the integration of phenomena at different spatial and temporal scales has emerged to be essential in capturing mechanobiological mechanisms underlying vascular adaptation processes. In this regard, agent-based models have demonstrated to successfully embed the systems biology principles and capture the emergent behavior of cellular systems under different pathophysiological conditions. Furthermore, through their modular structure, agent-based models are suitable to be integrated with continuum-based models within a multiscale framework that can link the molecular pathways to the cell and tissue levels. This can allow improving existing therapies and/or developing new therapeutic strategies. The present review examines the multiscale computational frameworks of vascular adaptation with an emphasis on the integration of agent-based approaches with continuum models to describe vascular pathophysiology in a systems biology perspective. The state-of-the-art highlights the current gaps and limitations in the field, thus shedding light on new areas to be explored that may become the future research focus. The inclusion of molecular intracellular pathways (e.g., genomics or proteomics) within the multiscale agent-based modeling frameworks will certainly provide a great contribution to the promising personalized medicine. Efforts will be also needed to address the challenges encountered for the verification, uncertainty quantification, calibration and validation of these multiscale frameworks.


2021 ◽  
Vol 5 (1(61)) ◽  
pp. 12-17
Author(s):  
Volodymyr Shvets ◽  
Viktor Tkachov

The object of research is a mathematical model describing the movement of a robot with five degrees of freedom for a warehouse. The work was aimed at analyzing the kinematic structure of the manipulator, on the basis of which the base and local coordinate systems were selected, as well as further formalized recording of the kinematic equations in matrix form. It is noted that one of the most problematic places is that the algorithms for controlling the robot most often contain local rules for the interaction of robots between themselves and the external environment, and emergent behavior is manifested as a result of the application of these rules, which does not have a formal description. Therefore, it is important to modernize the models describing the motion of a robot with five degrees of freedom for a warehouse. Using the matrix method, the sequence of constructing coordinate systems is described and its mathematical description is given, which will make it possible to eliminate this drawback in the future. The computer implementation of the developed algorithms was carried out using methods for processing matrix data structures. The principle of constructing a kinematic model of a robot is presented, with the help of which the main coordinate transformation matrices are obtained for robot with five degrees of freedom, and the possibility of taking into account the size of the gaps in the joints is shown. The resulting model is obtained, which is proposed for use in building control algorithms for a robot with an automatic gap selection, as well as in robot calibration. This is due to the fact that the proposed model has a number of features, in particular, the basic coordinate system and the coordinate system of each link of robot with five degrees of freedom are taken into account. This makes it possible to obtain the values of the indicators for the projection of the robot position vector in the initial state, in the rotation of the fourth link at a well-defined angle and in the case of a vertically straightened manipulator. Compared to similar known studies, this provides advantages such as minimizing errors in position, speed and motion accuracy. The object of research is a mathematical model describing the movement of a robot with five degrees of freedom for a warehouse. The work was aimed at analyzing the kinematic structure of the manipulator, on the basis of which the base and local coordinate systems were selected, as well as further formalized recording of the kinematic equations in matrix form. It is noted that one of the most problematic places is that the algorithms for controlling the robot most often contain local rules for the interaction of robots between themselves and the external environment, and emergent behavior is manifested as a result of the application of these rules, which does not have a formal description. Therefore, it is important to modernize the models describing the motion of a robot with five degrees of freedom for a warehouse. Using the matrix method, the sequence of constructing coordinate systems is described and its mathematical description is given, which will make it possible to eliminate this drawback in the future. The computer implementation of the developed algorithms was carried out using methods for processing matrix data structures. The principle of constructing a kinematic model of a robot is presented, with the help of which the main coordinate transformation matrices are obtained for robot with five degrees of freedom, and the possibility of taking into account the size of the gaps in the joints is shown. The resulting model is obtained, which is proposed for use in building control algorithms for a robot with an automatic gap selection, as well as in robot calibration. This is due to the fact that the proposed model has a number of features, in particular, the basic coordinate system and the coordinate system of each link of robot with five degrees of freedom are taken into account. This makes it possible to obtain the values of the indicators for the projection of the robot position vector in the initial state, in the rotation of the fourth link at a well-defined angle and in the case of a vertically straightened manipulator. Compared to similar known studies, this provides advantages such as minimizing errors in position, speed and motion accuracy.


2021 ◽  
Vol 2021 ◽  
pp. 1-18
Author(s):  
Yan Yang ◽  
Guanwei Luo

The mechanical model of a two-degree-of-freedom forced harmonic vibration system with multiclearance rigid constraints is established, considering the location schemes of symmetrical both-sided clearance and asymmetrical multiple clearance. Existence domains, correlative distributions, and bifurcation scenarios of periodic vibrations are analyzed using multiparameter and multiperformance cosimulation. Pattern diversity, distribution, and occurrence mechanism of the subharmonic impact motion sequences in the tongue-shaped transition regions among the neighboring fundamental periodic motions of the vibration systems are investigated. The emergent behavior of sticking process of fundamental periodic vibration, the occurrence law of chattering-impact motion, and the interaction of different modes of sticking are discussed. According to the sampling ranges of parameters, three multiple heterogeneous constraint conditions are explored; the effects of differently clearance location and values on the dynamic responses and the transition region of fundamental periodic vibrations and subharmonic motions are particularly analyzed. Hence, the reasonable clearance arrangement scheme and numerical optimization combination are determined and the ideal parameter domain of the vibration system is obtained.


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