scholarly journals Comparison of Empirical Mode Decomposition, Wavelets, and Different Machine Learning Approaches for Patient-Specific Seizure Detection Using Signal-Derived Empirical Dictionary Approach

2021 ◽  
Vol 3 ◽  
Author(s):  
Muhammad Kaleem ◽  
Aziz Guergachi ◽  
Sridhar Krishnan

Analysis of long-term multichannel EEG signals for automatic seizure detection is an active area of research that has seen application of methods from different domains of signal processing and machine learning. The majority of approaches developed in this context consist of extraction of hand-crafted features that are used to train a classifier for eventual seizure detection. Approaches that are data-driven, do not use hand-crafted features, and use small amounts of patients' historical EEG data for classifier training are few in number. The approach presented in this paper falls in the latter category, and is based on a signal-derived empirical dictionary approach, which utilizes empirical mode decomposition (EMD) and discrete wavelet transform (DWT) based dictionaries learned using a framework inspired by traditional methods of dictionary learning. Three features associated with traditional dictionary learning approaches, namely projection coefficients, coefficient vector and reconstruction error, are extracted from both EMD and DWT based dictionaries for automated seizure detection. This is the first time these features have been applied for automatic seizure detection using an empirical dictionary approach. Small amounts of patients' historical multi-channel EEG data are used for classifier training, and multiple classifiers are used for seizure detection using newer data. In addition, the seizure detection results are validated using 5-fold cross-validation to rule out any bias in the results. The CHB-MIT benchmark database containing long-term EEG recordings of pediatric patients is used for validation of the approach, and seizure detection performance comparable to the state-of-the-art is obtained. Seizure detection is performed using five classifiers, thereby allowing a comparison of the dictionary approaches, features extracted, and classifiers used. The best seizure detection performance is obtained using EMD based dictionary and reconstruction error feature and support vector machine classifier, with accuracy, sensitivity and specificity values of 88.2, 90.3, and 88.1%, respectively. Comparison is also made with other recent studies using the same database. The methodology presented in this paper is shown to be computationally efficient and robust for patient-specific automatic seizure detection. A data-driven methodology utilizing a small amount of patients' historical data is hence demonstrated as a practical solution for automatic seizure detection.

Author(s):  
Domenico D'Alelio ◽  
Salvatore Rampone ◽  
Luigi Maria Cusano ◽  
Nadia Sanseverino ◽  
Luca Russo ◽  
...  

2021 ◽  
Vol 11 (8) ◽  
pp. 785
Author(s):  
Quentin Miagoux ◽  
Vidisha Singh ◽  
Dereck de Mézquita ◽  
Valerie Chaudru ◽  
Mohamed Elati ◽  
...  

Rheumatoid arthritis (RA) is a multifactorial, complex autoimmune disease that involves various genetic, environmental, and epigenetic factors. Systems biology approaches provide the means to study complex diseases by integrating different layers of biological information. Combining multiple data types can help compensate for missing or conflicting information and limit the possibility of false positives. In this work, we aim to unravel mechanisms governing the regulation of key transcription factors in RA and derive patient-specific models to gain more insights into the disease heterogeneity and the response to treatment. We first use publicly available transcriptomic datasets (peripheral blood) relative to RA and machine learning to create an RA-specific transcription factor (TF) co-regulatory network. The TF cooperativity network is subsequently enriched in signalling cascades and upstream regulators using a state-of-the-art, RA-specific molecular map. Then, the integrative network is used as a template to analyse patients’ data regarding their response to anti-TNF treatment and identify master regulators and upstream cascades affected by the treatment. Finally, we use the Boolean formalism to simulate in silico subparts of the integrated network and identify combinations and conditions that can switch on or off the identified TFs, mimicking the effects of single and combined perturbations.


Author(s):  
Rasoul Hejazi ◽  
Andrew Grime ◽  
Mark Randolph ◽  
Mike Efthymiou

Abstract In-service integrity management (IM) of steel lazy wave risers (SLWRs) can benefit significantly from quantitative assessment of the overall risk of system failure as it can provide an effective tool for decision making. SLWRs are prone to fatigue failure within their touchdown zone (TDZ). This failure mode needs to be evaluated rigorously in riser IM processes because fatigue is an ongoing degradation mechanism threatening the structural integrity of risers throughout their service life. However, accurately evaluating the probability of fatigue failure for riser systems within a useful time frame is challenging due to the need to run a large number of nonlinear, dynamic numerical time domain simulations. Applying the Bayesian framework for machine learning, through the use of Gaussian Processes (GP) for regression, offers an attractive solution to overcome the burden of prohibitive simulation run times. GPs are stochastic, data-driven predictive models which incorporate the underlying physics of the problem in the learning process, and facilitate rapid probabilistic assessments with limited loss in accuracy. This paper proposes an efficient framework for practical implementation of a GP to create predictive models for the estimation of fatigue responses at SLWR hotspots. Such models are able to perform stochastic response prediction within a few milliseconds, thus enabling rapid prediction of the probability of SLWR fatigue failure. A realistic North West Shelf (NWS) case study is used to demonstrate the framework, comprising a 20” SLWR connected to a representative floating facility located in 950 m water depth. A full hindcast metocean dataset with associated statistical distributions are used for the riser long-term fatigue loading conditions. Numerical simulation and sampling techniques are adopted to generate a simulation-based dataset for training the data-driven model. In addition, a recently developed dimensionality reduction technique is employed to improve efficiency and reduce complexity of the learning process. The results show that the stochastic predictive models developed by the suggested framework can predict the long-term TDZ fatigue damage of SLWRs due to vessel motions with an acceptable level of accuracy for practical purposes.


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