Distribution of Megabenthic Communities Under Contrasting Settings in Deep-Sea Cold Seeps Near Northwest Atlantic Canyons

Cold seeps support fragile deep-sea communities of high biodiversity and are often found in areas with high commercial interest. Protecting them from encroaching human impacts (bottom trawling, oil and gas exploitation, climate change) requires an advanced understanding of the drivers shaping their spatial distribution and biodiversity. Based on the analysis of 2,075 high-quality images from six remotely operated vehicle dives, we examined cold seep megabenthic community composition, richness, density, and biodiversity at a relatively shallow (∼400 m water depth) site near Baltimore Canyon (BC) and a much deeper site (∼1,500 m) near Norfolk Canyon (NC), in the northwest Atlantic. We found sharp differences in the megabenthic composition between the sites, which were driven mostly by bathymetric gradients. At both BC and NC there were significant differences in megabenthic composition across habitats. Hard habitats in and around cold seeps had significantly higher values of species richness, density, and biodiversity than soft habitats. Depth and habitat complexity were the leading environmental variables driving megabenthic variability. The presence of microbial mats and gas bubbling sites had a statistically significant contribution to explaining megabenthic variability mainly in the shallower BC and less in the deeper NC areas examined; drivers behind this discrepancy could be related to differences between BC and NC in terms of chemical compound fluxes and megafaunal life history characteristics. Our surveys revealed marine litter, primarily from commercial fisheries. This study highlights the importance of habitat complexity for the proliferation of highly diverse cold-seep ecosystems and underscores the importance of discovery science to inform spatial management of human activities in the deep and open ocean.

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Development of an Easy-to-Operate Underwater Raman System for Deep-Sea Cold Seep and Hydrothermal Vent In Situ Detection

Sensors ◽

10.3390/s21155090 ◽

2021 ◽

Vol 21 (15) ◽

pp. 5090

Author(s):

Qingsheng Liu ◽

Jinjia Guo ◽

Wangquan Ye ◽

Kai Cheng ◽

Fujun Qi ◽

...

Keyword(s):

Deep Sea ◽

Hydrothermal Vent ◽

Methane Hydrate ◽

Sulfur Cycle ◽

Cold Seep ◽

Remotely Operated Vehicle ◽

Bacterial Mats ◽

Optical Module ◽

In Situ Detection

As a powerful in situ detection technique, Raman spectroscopy is becoming a popular underwater investigation method, especially in deep-sea research. In this paper, an easy-to-operate underwater Raman system with a compact design and competitive sensitivity is introduced. All the components, including the optical module and the electronic module, were packaged in an L362 × Φ172 mm titanium capsule with a weight of 20 kg in the air (about 12 kg in water). By optimising the laser coupling mode and focusing lens parameters, a competitive sensitivity was achieved with the detection limit of SO42− being 0.7 mmol/L. The first sea trial was carried out with the aid of a 3000 m grade remotely operated vehicle (ROV) “FCV3000” in October 2018. Over 20,000 spectra were captured from the targets interested, including methane hydrate, clamshell in the area of cold seep, and bacterial mats around a hydrothermal vent, with a maximum depth of 1038 m. A Raman peak at 2592 cm−1 was found in the methane hydrate spectra, which revealed the presence of hydrogen sulfide in the seeping gas. In addition, we also found sulfur in the bacterial mats, confirming the involvement of micro-organisms in the sulfur cycle in the hydrothermal field. It is expected that the system can be developed as a universal deep-sea survey and detection equipment in the near future.

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Deep-sea ophiuroids (Echinodermata) from reducing and non-reducing environments in the North Atlantic Ocean

Journal of the Marine Biological Association of the United Kingdom ◽

10.1017/s0025315405011318h ◽

2005 ◽

Vol 85 (2) ◽

pp. 383-402 ◽

Cited By ~ 27

Author(s):

Sabine Stöhr ◽

Michel Segonzac

Keyword(s):

South Carolina ◽

Gulf Of Mexico ◽

Deep Sea ◽

Hydrothermal Vents ◽

Cold Seep ◽

Chemical Compositions ◽

Cold Seeps ◽

Additional Species ◽

Blake Ridge ◽

Reducing Environment

The animal communities associated with the deep-sea reducing environment have been studied for almost 30 years, but until now only a single species of ophiuroid, Ophioctenella acies, has been found at both hydrothermal vents and methane cold seeps. Since the faunal overlap between vent and seep communities is small and many endemic species have been found among other taxa (e.g. Mollusca, Crustacea), additional species of ophiuroids were expected at previously unstudied sites. Chemical compositions at reducing sites differ greatly from the nearby bathyal environment. Generally, species adapted to chemosynthetic environments are not found in non-chemosynthetic habitats, but occasional visitors of other bathyal species to vent and seep sites have been recorded among many taxa except ophiuroids. This paper presents an analysis of the ophiuroid fauna found at hydrothermal vents and non-reducing nearby sites on the Mid-Atlantic Ridge and on methane cold seeps in the Gulf of Mexico, at Blake Ridge off South Carolina and south of Barbados. In addition to O. acies, four species were found at vents, Ophiactis tyleri sp. nov., Ophiocten centobi, Ophiomitra spinea and Ophiotreta valenciennesi rufescens. While Ophioctenella acies appears to be restricted to chemosynthetic areas, the other four species were also found in other bathyal habitats. They also occur in low numbers (mostly single individuals), whereas species adapted to hydrothermal areas typically occur in large numbers. Ophioscolex tripapillatus sp. nov. and Ophiophyllum atlanticum sp. nov. are described from nearby non-chemosynthetic sites. In a cold seep south of Barbados, three species of ophiuroids were found, including Ophioctenella acies, Amphiura sp., Ophiacantha longispina sp. nov. and Ophioplinthaca chelys. From the cold seeps at Blake Ridge and the Gulf of Mexico, Ophienigma spinilimbatum gen. et sp. nov. is described, likely restricted to the reducing environment. Ophiotreta valenciennesi rufescens occurred abundantly among Lophelia corals in the Gulf of Mexico seeps, which is the first record of this species from the West Atlantic. Habitat descriptions complement the taxonomic considerations, and the distribution of the animals in reducing environments is discussed.

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Thermogenic hydrocarbons fuel a redox stratified subseafloor microbiome in deep sea cold seep sediments

10.1101/2020.02.02.928283 ◽

2020 ◽

Author(s):

Xiyang Dong ◽

Jayne E. Rattray ◽

D. Calvin Campbell ◽

Jamie Webb ◽

Anirban Chakraborty ◽

...

Keyword(s):

Deep Sea ◽

Hydrogen Oxidation ◽

Sulfide Oxidation ◽

Cold Seep ◽

Reductive Dehalogenation ◽

Cold Seeps ◽

Community Members ◽

Metabolic Potential ◽

Near Surface ◽

Fumarate Addition

AbstractAt marine cold seeps, gaseous and liquid hydrocarbons migrate from deep subsurface origins to the sediment-water interface. Cold seep sediments are known to host taxonomically diverse microorganisms, but little is known about their metabolic potential and depth distribution in relation to hydrocarbon and electron acceptor availability. In this work, we combined geochemical, metagenomic and metabolomic measurements in distinct sediment redox regimes to profile microbial activities within the uppermost 350 cm of a newly discovered cold seep in the NW Atlantic deep sea (2.3 km water depth). Depth-resolved metagenomic profiling revealed compositional and functional differentiation between near-surface sediments (dominated by Proteobacteria) and deeper subsurface layers (dominated by Atribacteria, Chloroflexi, Euryarchaeota and Lokiarchaeota). Metabolic capabilities of community members were inferred from 376 metagenome-assembled genomes spanning 46 phyla (including five novel candidate phyla). In deeper sulfate-reducing and methanogenic sediments, various community members are capable of anaerobically oxidizing short-chain alkanes (alkyl-CoM reductase pathway), longer-chain alkanes (fumarate addition pathway), and aromatic hydrocarbons (fumarate addition and subsequent benzoyl-CoA pathways). Geochemical profiling demonstrated that hydrocarbon substrates are abundant in this location, thermogenic in origin, and subject to biodegradation. The detection of alkyl-/arylalkylsuccinate metabolites, together with carbon isotopic signatures of ethane, propane and carbon dioxide, support that microorganisms are actively degrading hydrocarbons in these sediments. Hydrocarbon oxidation pathways operate alongside other deep seabed metabolisms such as sulfide oxidation, hydrogen oxidation, carbon fixation, fermentation and reductive dehalogenation. Upward migrated thermogenic hydrocarbons thus sustain diverse microbial communities with activities that affect subseafloor biogeochemical processes across the redox spectrum in deep sea cold seeps.

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Deep sea sediments associated with cold seeps are a subsurface reservoir of viral diversity

10.1101/2020.09.08.284018 ◽

2020 ◽

Author(s):

Zexin Li ◽

Donald Pan ◽

Guangshan Wei ◽

Weiling Pi ◽

Jiang-Hai Wang ◽

...

Keyword(s):

Microbial Communities ◽

Deep Sea ◽

Cold Seep ◽

Hydrocarbon Biodegradation ◽

Viral Diversity ◽

Cold Seeps ◽

Host Interaction ◽

Deep Sea Sediments ◽

Subsurface Reservoir ◽

Network Comparisons

AbstractIn marine ecosystems, viruses exert control on the composition and metabolism of microbial communities, thus influencing overall biogeochemical cycling. Deep sea sediments associated with cold seeps are known to host taxonomically diverse microbial communities, but little is known about viruses infecting these microorganisms. Here, we probed metagenomes from seven geographically diverse cold seeps across global oceans, to assess viral diversity, virus-host interaction, and virus-encoded auxiliary metabolic genes (AMGs). Gene-sharing network comparisons with viruses inhabiting other ecosystems reveal that cold seep sediments harbour considerable unexplored viral diversity. Most cold seep viruses display high degrees of endemism with seep fluid flux being one of the main drivers of viral community composition. In silico predictions linked 14.2% of the viruses to microbial host populations, with many belonging to poorly understood candidate bacterial and archaeal phyla. Lysis was predicted to be a predominant viral lifestyle based on lineage-specific virus/host abundance ratios. Metabolic predictions of prokaryotic host genomes and viral AMGs suggest that viruses influence microbial hydrocarbon biodegradation at cold seeps, as well as other carbon, sulfur and nitrogen cycling via virus-induced mortality and/or metabolic augmentation. Overall, these findings reveal the global diversity and biogeography of cold seep viruses and indicate how viruses may manipulate seep microbial ecology and biogeochemistry.

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A deep-sea sulfate reducing bacterium directs the formation of zero-valent sulfur via sulfide oxidation

10.1101/2021.03.23.436689 ◽

2021 ◽

Author(s):

Rui Liu ◽

Yeqi Shan ◽

Shichuan Xi ◽

Xin Zhang ◽

Chaomin Sun

Keyword(s):

Deep Sea ◽

Sulfide Oxidation ◽

Sulfur Cycle ◽

Cold Seep ◽

Cold Seeps ◽

Protein Activity ◽

Quinone Oxidoreductase ◽

Sulfate Reducing ◽

Thiosulfate Reductase ◽

Reducing Bacteria

Zero-valent sulfur (ZVS) is a critical intermediate in the biogeochemical sulfur cycle. Up to date, sulfur oxidizing bacteria have been demonstrated to dominate the formation of ZVS. In contrast, formation of ZVS mediated by sulfate reducing bacteria (SRB) has been rarely reported. Here, we report for the first time that a typical sulfate reducing bacterium Desulfovibrio marinus CS1 directs the formation of ZVS via sulfide oxidation. In combination with proteomic analysis and protein activity assays, thiosulfate reductase (PhsA) and sulfide: quinone oxidoreductase (SQR) were demonstrated to play key roles in driving ZVS formation. In this process, PhsA catalyzed thiosulfate to form sulfide, which was then oxidized by SQR to form ZVS. Consistently, the expressions of PhsA and SQR were significantly up-regulated in strain CS1 when cultured in the deep-sea cold seep, strongly indicating strain CS1 might form ZVS in its real inhabiting niches. Notably, homologs of phsA and sqr widely distributed in the metagenomes of deep-sea SRB. Given the high abundance of SRB in cold seeps, it is reasonable to propose that SRB might greatly contribute to the formation of ZVS in the deep-sea environments. Our findings add a new aspect to the current understanding of the source of ZVS.

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Phosphorus Species in Deep-Sea Carbonate Deposits: Implications for Phosphorus Cycling in Cold Seep Environments

Minerals ◽

10.3390/min10070645 ◽

2020 ◽

Vol 10 (7) ◽

pp. 645

Author(s):

Junlie Zhou ◽

Mengran Du ◽

Jiwei Li ◽

Hengchao Xu ◽

Kaiwen Ta ◽

...

Keyword(s):

Deep Sea ◽

Cold Seep ◽

Anaerobic Oxidation Of Methane ◽

Cold Seeps ◽

Organic P ◽

Anaerobic Oxidation ◽

Phosphorus Species ◽

China Sea ◽

Oxidation Of Methane ◽

Deep Sediments

Phosphorus (P) is an important nutrient for biological communities in cold seeps. However, our knowledge on the source, species, and cycling of P in cold seep environments is limited. In this study, the concentration, species, and micro to nanometer scale distribution of P in seep carbonates were examined at three deep-sea cold seeps in the South China Sea and East China Sea. The Ca-P accounts for the largest proportion of P—followed by detrital-P, Fe-P, organic-P, and exchangeable-P. The distribution patterns of Ca-P, detrital-P, and organic-P in the seep carbonates differ from one another, as shown by elemental mapping with NanoSIMS and scanning electron microscopy. The covariation of P with Ca and C reveals that Ca-P co-precipitates with Ca-carbonate, which is linked to the process of sulfate-driven anaerobic oxidation of methane. Organic-P is also observed within biofilm-like organic carbon aggregates, revealing the microbial enrichment of P by fluids in the process of anaerobic oxidation of methane. P with a granulated morphology was identified as detrital-P derived from deep sediments. Most importantly, it is evident that Ca-P is positively correlated to the Fe content in all the seep carbonates. This indicates the likelihood that the dissolved P in cold-seep fluids is released primarily from Fe oxides through Fe-driven anaerobic oxidation of methane in deep sediments. These processes associated with different species of P may have significant implications for P geochemical cycling and anaerobic oxidation of methane impelled by Fe and sulfate reduction in cold seep environments.

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Influence of chemosynthetic ecosystems on nematode community structure and biomass in the deep eastern Mediterranean Sea

Biogeosciences ◽

10.5194/bg-10-5381-2013 ◽

2013 ◽

Vol 10 (8) ◽

pp. 5381-5398 ◽

Cited By ~ 13

Author(s):

N. Lampadariou ◽

V. Kalogeropoulou ◽

K. Sevastou ◽

K. Keklikoglou ◽

J. Sarrazin

Keyword(s):

Species Richness ◽

Mediterranean Sea ◽

Eastern Mediterranean ◽

Nematode Community ◽

Cold Seep ◽

Cold Seeps ◽

Mud Volcanoes ◽

Remotely Operated Vehicle ◽

Eastern Mediterranean Sea ◽

Density And Biomass

Abstract. Mud volcanoes are a~special type of cold seeps where life is based on chemoautotrophic processes. They are considered to be extreme environments and are characterized by unique megafaunal and macrofaunal communities. However, very few studies on mud volcanoes taking into account the smaller meiobenthic communities have been carried out. Two mud volcanoes were explored during the MEDECO (MEditerranean Deep-sea ECOsystems) cruise (2007) with the remotely operated vehicle (ROV) Victor-6000: Amsterdam, located south of Turkey between 1700 and 2000 m depth (Anaximander mud field); and Napoli, south of Crete, located along the Mediterranean Ridge at about 2000 m depth (Olimpi mud field). The major aim of this study was to describe distributional patterns of meiofaunal communities and nematode assemblages from different seep microhabitats. Meiofaunal taxa and nematode assemblages at both mud volcanoes differed significantly from other Mediterranean sites in terms of standing stocks, dominance and species diversity. Density and biomass values were significantly higher at the seep sites, particularly at Amsterdam. Patterns of nematode diversity, the dominant meiofaunal taxon, varied, displaying both very high or very low species richness and dominance, depending on the microhabitat studied. The periphery of the Lamellibrachia and bivalve shell microhabitats of Napoli exhibited the highest species richness, while the reduced sediments of Amsterdam yielded a species-poor nematode community dominated by two successful species, one belonging to the genus Aponema and the other to the genus Sabatieria. Analysis of β-diversity showed that microhabitat heterogeneity of mud volcanoes contributed substantially to the total nematode species richness in the eastern Mediterranean Sea. These observations indicate a strong influence of mud volcanoes and cold-seep ecosystems on the meiofaunal communities and nematode assemblages.

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Molecular phylogenetic and chemical analyses of the microbial mats in deep-sea cold seep sediments at the northeastern Japan Sea

Extremophiles ◽

10.1007/s00792-005-0501-0 ◽

2006 ◽

Vol 10 (4) ◽

pp. 311-319 ◽

Cited By ~ 31

Author(s):

Shizuka Arakawa ◽

Takako Sato ◽

Rumi Sato ◽

Jing Zhang ◽

Toshitaka Gamo ◽

...

Keyword(s):

Deep Sea ◽

Microbial Mats ◽

Japan Sea ◽

Cold Seep ◽

Chemical Analyses ◽

Northeastern Japan ◽

Molecular Phylogenetic

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Interaction between hydrocarbon seepage, chemosynthetic communities and bottom water redox at cold seeps of the Makran accretionary prism: insights from habitat-specific pore water sampling and modeling

Biogeosciences Discussions ◽

10.5194/bgd-8-9763-2011 ◽

2011 ◽

Vol 8 (5) ◽

pp. 9763-9811 ◽

Cited By ~ 5

Author(s):

D. Fischer ◽

H. Sahling ◽

K. Nöthen ◽

G. Bohrmann ◽

M. Zabel ◽

...

Keyword(s):

Hydrogen Sulfide ◽

Pore Water ◽

Bottom Water ◽

Microbial Mats ◽

Lower Boundary ◽

Accretionary Prism ◽

Anaerobic Oxidation Of Methane ◽

Cold Seeps ◽

Remotely Operated Vehicle ◽

Geochemical Environment

Abstract. The interaction between fluid seepage, bottom water redox, and chemosynthetic communities was studied at cold seeps across one of the world's largest oxygen minimum zones (OMZ) located at the Makran convergent continental margin. Push cores were obtained from seeps within and at the lower boundary of the core-OMZ with a remotely operated vehicle. Extracted pore water was analyzed for sulfide and sulfate contents. Depending on oxygen availability, seeps were either colonized by microbial mats or by mats and macrofauna. The latter, including ampharetid polychaetes and vesicomyid clams, occurred in distinct benthic habitats which were arranged in a concentric fashion around gas orifices. At most sites colonized by microbial mats, hydrogen sulfide was exported into the bottom water. Where macrofauna was widely abundant, hydrogen sulfide was consumed within the sediment. Numerical modeling of pore water profiles was performed in order to assess rates of fluid advection and bioirrigation. While the magnitude of upward fluid flow decreased from 11 cm yr−1 to <1 cm yr−1 and the sulfate/methane transition zone (SMTZ) deepened with increasing distance from the central gas orifice, the fluxes of sulfate into the SMTZ did not significantly differ (6.6–9.3 mol m−2 yr−1). Depth-integrated rates of bioirrigation increased from 162 cm yr−1 in central habitats characterized by microbial mats and sparse macrofauna to 348 cm yr−1 in habitats of large and small vesicomyid clams. These results reveal that chemosynthetic macrofauna inhabiting the outer seep habitats at the lower boundary of the OMZ efficiently bioirrigate and thus transport sulfate into the upper 10 to 15 cm of the sediment. In this way bioirrigation compensates for the lower upward flux of methane in outer habitats and stimulates rates of anaerobic oxidation of methane (AOM) with sulfate high enough to provide sulfide for chemosynthesis. Through bioirrigation macrofauna engineer their geochemical environment and fuel upward sulfide flux via AOM. Due to the introduction of oxygenated bottom water into the sediment via bioirrigation the depth of the sulfide sink gradually deepens towards outer habitats. We therefore suggest that – in addition to the oxygen levels in the water column which determine whether macrofaunal communities can develop or not – it is rather the depth of the SMTZ and thus of sulfide production that determines which chemosynthetic communities are able to exploit the sulfide at depth. Moreover, large vesicomyid clams most efficiently expand the sulfate zone in the sediment and cut off smaller or immobile organisms from the sulfide source.

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A new genus and species of spionid polychaete (Annelida, Spionidae) from a deep-water cold seep site in the Eastern Mediterranean Sea off Turkey

Zoosymposia ◽

10.11646/zoosymposia.19.1.14 ◽

2020 ◽

Vol 19 (1) ◽

pp. 121-134

Author(s):

JAMES A. BLAKE ◽

PATRICIA A. RAMEY-BALCI

Keyword(s):

New Species ◽

Mediterranean Sea ◽

Deep Water ◽

Deep Sea ◽

New Genus ◽

Microbial Mats ◽

Eastern Mediterranean ◽

Cold Seep ◽

New Genus And Species ◽

Eastern Mediterranean Sea

A new spionid polychaete was discovered in deep-sea sediments in the eastern Mediterranean Sea during an expedition by the Ocean Exploration Trust. Specimens were collected by the E/V Nautilus in August 2012 off Turkey, at a depth of 2216 m on the Anaximander Seamount at the Amsterdam mud volcano site. Cores were taken from sediments covered with microbial mats. The new species belongs to the Pygospiopsis-Atherospio Group, which has unusual neuropodial hooks, modified neurosetae in some anterior setigers, and branchiae in middle body segments that are broad, flattened, and fused to the dorsal lamellae. The new species is assigned to a new genus and species, Aciculaspio anaximanderi n. gen., n. sp., and is unusual in having a reduced setiger 1 lacking notosetae; well-developed pre- and postsetal lamellae that encompass the neurosetae and notosetae; notopodial lamellae free from the branchiae in anterior setigers that become fused and flattened in middle and posterior segments; unidentate hooded hooks in both noto- and neuropodia; neuropodial spines in setigers 4–10; and a pygidium with three anal cirri. Aciculaspio anaximanderi n. gen., n. sp. is the first species in the Atherospio-Pygospiopsis Group collected from a deep-water cold seep habitat.

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