scholarly journals Deep Neural Networks and Transfer Learning on a Multivariate Physiological Signal Dataset

2021 ◽  
Vol 8 (3) ◽  
pp. 35
Author(s):  
Andrea Bizzego ◽  
Giulio Gabrieli ◽  
Gianluca Esposito
Keyword(s):  
Neural Networks ◽  
Transfer Learning ◽  
Deep Neural Networks ◽  
Electrodermal Activity ◽  
Physiological Signals ◽  
Support Vector ◽  
Specific Measure ◽  
Physiological Signal ◽  
Different Types ◽  
Acceleration Signals

While Deep Neural Networks (DNNs) and Transfer Learning (TL) have greatly contributed to several medical and clinical disciplines, the application to multivariate physiological datasets is still limited. Current examples mainly focus on one physiological signal and can only utilise applications that are customised for that specific measure, thus it limits the possibility of transferring the trained DNN to other domains. In this study, we composed a dataset (n=813) of six different types of physiological signals (Electrocardiogram, Electrodermal activity, Electromyogram, Photoplethysmogram, Respiration and Acceleration). Signals were collected from 232 subjects using four different acquisition devices. We used a DNN to classify the type of physiological signal and to demonstrate how the TL approach allows the exploitation of the efficiency of DNNs in other domains. After the DNN was trained to optimally classify the type of signal, the features that were automatically extracted by the DNN were used to classify the type of device used for the acquisition using a Support Vector Machine. The dataset, the code and the trained parameters of the DNN are made publicly available to encourage the adoption of DNN and TL in applications with multivariate physiological signals.

414 Deep Neural Networks: A Survey Tool for Obstructive Sleep Apnea Prediction

SLEEP ◽  
2021 ◽  
Vol 44 (Supplement_2) ◽  
pp. A164-A164
Author(s):  
Pahnwat Taweesedt ◽  
JungYoon Kim ◽  
Jaehyun Park ◽  
Jangwoon Park ◽  
Munish Sharma ◽  
...  
Keyword(s):  
Machine Learning ◽  
Neural Networks ◽  
Obstructive Sleep Apnea ◽  
Sleep Apnea ◽  
Deep Neural Networks ◽  
Support Vector ◽  
Learning Models ◽  
Obstructive Sleep ◽  
Screening Questionnaires ◽  
Machine Learning Models

Abstract Introduction Obstructive sleep apnea (OSA) is a common sleep-related breathing disorder with an estimation of one billion people. Full-night polysomnography is considered the gold standard for OSA diagnosis. However, it is time-consuming, expensive and is not readily available in many parts of the world. Many screening questionnaires and scores have been proposed for OSA prediction with high sensitivity and low specificity. The present study is intended to develop models with various machine learning techniques to predict the severity of OSA by incorporating features from multiple questionnaires. Methods Subjects who underwent full-night polysomnography in Torr sleep center, Texas and completed 5 OSA screening questionnaires/scores were included. OSA was diagnosed by using Apnea-Hypopnea Index ≥ 5. We trained five different machine learning models including Deep Neural Networks with the scaled principal component analysis (DNN-PCA), Random Forest (RF), Adaptive Boosting classifier (ABC), and K-Nearest Neighbors classifier (KNC) and Support Vector Machine Classifier (SVMC). Training:Testing subject ratio of 65:35 was used. All features including demographic data, body measurement, snoring and sleepiness history were obtained from 5 OSA screening questionnaires/scores (STOP-BANG questionnaires, Berlin questionnaires, NoSAS score, NAMES score and No-Apnea score). Performance parametrics were used to compare between machine learning models. Results Of 180 subjects, 51.5 % of subjects were male with mean (SD) age of 53.6 (15.1). One hundred and nineteen subjects were diagnosed with OSA. Area Under the Receiver Operating Characteristic Curve (AUROC) of DNN-PCA, RF, ABC, KNC, SVMC, STOP-BANG questionnaire, Berlin questionnaire, NoSAS score, NAMES score, and No-Apnea score were 0.85, 0.68, 0.52, 0.74, 0.75, 0.61, 0.63, 0,61, 0.58 and 0,58 respectively. DNN-PCA showed the highest AUROC with sensitivity of 0.79, specificity of 0.67, positive-predictivity of 0.93, F1 score of 0.86, and accuracy of 0.77. Conclusion Our result showed that DNN-PCA outperforms OSA screening questionnaires, scores and other machine learning models. Support (if any):

Rice Leaf Diseases Prediction using Deep Neural Networks with Transfer Learning

2021 ◽  
pp. 111275
Author(s):  
N. Krishnamoorthy ◽  
LVNarasimha Prasad ◽  
CSPavan Kumar ◽  
Bharat Subedi ◽  
Haftom Baraki Abraha ◽  
...  
Keyword(s):  
Neural Networks ◽  
Transfer Learning ◽  
Deep Neural Networks ◽  
Rice Leaf

scholarly journals Natural Images Allow Universal Adversarial Attacks on Medical Image Classification Using Deep Neural Networks with Transfer Learning

2021 ◽  
Author(s):  
Akinori Minagi ◽  
Hokuto Hirano ◽  
Kazuhiro Takemoto
Keyword(s):  
Neural Networks ◽  
Image Classification ◽  
Transfer Learning ◽  
Medical Image ◽  
Deep Neural Networks ◽  
Disease Diagnosis ◽  
Natural Images ◽  
Fine Tuning ◽  
Security And Privacy ◽  
Medical Image Classification

Abstract Transfer learning from natural images is well used in deep neural networks (DNNs) for medical image classification to achieve computer-aided clinical diagnosis. Although the adversarial vulnerability of DNNs hinders practical applications owing to the high stakes of diagnosis, adversarial attacks are expected to be limited because training data — which are often required for adversarial attacks — are generally unavailable in terms of security and privacy preservation. Nevertheless, we hypothesized that adversarial attacks are also possible using natural images because pre-trained models do not change significantly after fine-tuning. We focused on three representative DNN-based medical image classification tasks (i.e., skin cancer, referable diabetic retinopathy, and pneumonia classifications) and investigated whether medical DNN models with transfer learning are vulnerable to universal adversarial perturbations (UAPs), generated using natural images. UAPs from natural images are useful for both non-targeted and targeted attacks. The performance of UAPs from natural images was significantly higher than that of random controls, although slightly lower than that of UAPs from training images. Vulnerability to UAPs from natural images was observed between different natural image datasets and between different model architectures. The use of transfer learning causes a security hole, which decreases the reliability and safety of computer-based disease diagnosis. Model training from random initialization (without transfer learning) reduced the performance of UAPs from natural images; however, it did not completely avoid vulnerability to UAPs. The vulnerability of UAPs from natural images will become a remarkable security threat.

Bidirectional deep neural networks to integrate RNA and DNA data for predicting outcome for patients with hepatocellular carcinoma

2021 ◽  
Author(s):  
Guojun Huang ◽  
Cheng Wang ◽  
Xi Fu
Keyword(s):  
Hepatocellular Carcinoma ◽  
Neural Networks ◽  
Deep Neural Networks ◽  
Support Vector ◽  
Machine Model ◽  
Mrna Expression Data ◽  
Machine Learning Approach ◽  
Patient Profiling ◽  
Predicting Outcome ◽  
Subgroup Classification

Aims: Individualized patient profiling is instrumental for personalized management in hepatocellular carcinoma (HCC). This study built a model based on bidirectional deep neural networks (BiDNNs), an unsupervised machine-learning approach, to integrate multi-omics data and predict survival in HCC. Methods: DNA methylation and mRNA expression data for HCC samples from the TCGA database were integrated using BiDNNs. With optimal clusters as labels, a support vector machine model was developed to predict survival. Results: Using the BiDNN-based model, samples were clustered into two survival subgroups. The survival subgroup classification was an independent prognostic factor. BiDNNs were superior to multimodal autoencoders. Conclusion: This study constructed and validated a BiDNN-based model for predicting prognosis in HCC, with implications for individualized therapies in HCC.

scholarly journals Ship-Iceberg Classification in SAR and Multispectral Satellite Images with Neural Networks

2020 ◽  
Vol 12 (15) ◽  
pp. 2353
Author(s):  
Henning Heiselberg
Keyword(s):  
Neural Networks ◽  
Satellite Images ◽  
Deep Neural Networks ◽  
Data Augmentation ◽  
Neural Nets ◽  
The Arctic ◽  
Support Vector ◽  
Sar Images ◽  
Multispectral Satellite Images ◽  
The Cost

Classification of ships and icebergs in the Arctic in satellite images is an important problem. We study how to train deep neural networks for improving the discrimination of ships and icebergs in multispectral satellite images. We also analyze synthetic-aperture radar (SAR) images for comparison. The annotated datasets of ships and icebergs are collected from multispectral Sentinel-2 data and taken from the C-CORE dataset of Sentinel-1 SAR images. Convolutional Neural Networks with a range of hyperparameters are tested and optimized. Classification accuracies are considerably better for deep neural networks than for support vector machines. Deeper neural nets improve the accuracy per epoch but at the cost of longer processing time. Extending the datasets with semi-supervised data from Greenland improves the accuracy considerably whereas data augmentation by rotating and flipping the images has little effect. The resulting classification accuracies for ships and icebergs are 86% for the SAR data and 96% for the MSI data due to the better resolution and more multispectral bands. The size and quality of the datasets are essential for training the deep neural networks, and methods to improve them are discussed. The reduced false alarm rates and exploitation of multisensory data are important for Arctic search and rescue services.

scholarly journals Utilizing Information Bottleneck to Evaluate the Capability of Deep Neural Networks for Image Classification

Entropy ◽  
2019 ◽  
Vol 21 (5) ◽  
pp. 456 ◽  
Author(s):  
Hao Cheng ◽  
Dongze Lian ◽  
Shenghua Gao ◽  
Yanlin Geng
Keyword(s):  
Neural Networks ◽  
Deep Learning ◽  
Model Selection ◽  
Image Classification ◽  
Transfer Learning ◽  
Deep Neural Networks ◽  
Classification Problem ◽  
Distribution Model ◽  
Classification Problems ◽  
Information Bottleneck

Inspired by the pioneering work of the information bottleneck (IB) principle for Deep Neural Networks’ (DNNs) analysis, we thoroughly study the relationship among the model accuracy, I ( X ; T ) and I ( T ; Y ) , where I ( X ; T ) and I ( T ; Y ) are the mutual information of DNN’s output T with input X and label Y. Then, we design an information plane-based framework to evaluate the capability of DNNs (including CNNs) for image classification. Instead of each hidden layer’s output, our framework focuses on the model output T. We successfully apply our framework to many application scenarios arising in deep learning and image classification problems, such as image classification with unbalanced data distribution, model selection, and transfer learning. The experimental results verify the effectiveness of the information plane-based framework: Our framework may facilitate a quick model selection and determine the number of samples needed for each class in the unbalanced classification problem. Furthermore, the framework explains the efficiency of transfer learning in the deep learning area.

scholarly journals Hybridizing Evolutionary Computation and Deep Neural Networks: An Approach to Handwriting Recognition Using Committees and Transfer Learning

Complexity ◽  
2019 ◽  
Vol 2019 ◽  
pp. 1-16 ◽  
Author(s):  
Alejandro Baldominos ◽  
Yago Saez ◽  
Pedro Isasi
Keyword(s):  
Neural Networks ◽  
Evolutionary Computation ◽  
Transfer Learning ◽  
Convolutional Neural Networks ◽  
Character Recognition ◽  
Deep Neural Networks ◽  
Handwriting Recognition ◽  
Computational Time ◽  
Learning Models ◽  
Expensive Process

Neuroevolution is the field of study that uses evolutionary computation in order to optimize certain aspect of the design of neural networks, most often its topology and hyperparameters. The field was introduced in the late-1980s, but only in the latest years the field has become mature enough to enable the optimization of deep learning models, such as convolutional neural networks. In this paper, we rely on previous work to apply neuroevolution in order to optimize the topology of deep neural networks that can be used to solve the problem of handwritten character recognition. Moreover, we take advantage of the fact that evolutionary algorithms optimize a population of candidate solutions, by combining a set of the best evolved models resulting in a committee of convolutional neural networks. This process is enhanced by using specific mechanisms to preserve the diversity of the population. Additionally, in this paper, we address one of the disadvantages of neuroevolution: the process is very expensive in terms of computational time. To lessen this issue, we explore the performance of topology transfer learning: whether the best topology obtained using neuroevolution for a certain domain can be successfully applied to a different domain. By doing so, the expensive process of neuroevolution can be reused to tackle different problems, turning it into a more appealing approach for optimizing the design of neural networks topologies. After evaluating our proposal, results show that both the use of neuroevolved committees and the application of topology transfer learning are successful: committees of convolutional neural networks are able to improve classification results when compared to single models, and topologies learned for one problem can be reused for a different problem and data with a good performance. Additionally, both approaches can be combined by building committees of transferred topologies, and this combination attains results that combine the best of both approaches.

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