scholarly journals Effects of Soil Quality on the Microbial Community Structure of Poorly Evolved Mediterranean Soils

Toxics ◽  
2022 ◽  
Vol 10 (1) ◽  
pp. 14
Author(s):  
Antonio Camacho ◽  
César Mora ◽  
Antonio Picazo ◽  
Carlos Rochera ◽  
Alba Camacho-Santamans ◽  
...  
Keyword(s):  
Organic Matter ◽  
Community Structure ◽  
Microbial Community ◽  
Microbial Diversity ◽  
Soil Quality ◽  
Forest Soils ◽  
Microbial Community Structure ◽  
Soil Microbiota ◽  
Mediterranean Soils ◽  
Physical And Chemical

Physical and chemical alterations may affect the microbiota of soils as much as the specific presence of toxic pollutants. The relationship between the microbial diversity patterns and the soil quality in a Mediterranean context is studied here to test the hypothesis that soil microbiota is strongly affected by the level of anthropogenic soil alteration. Our aim has been to determine the potential effect of organic matter loss and associated changes in soil microbiota of poorly evolved Mediterranean soils (Leptosols and Regosols) suffering anthropogenic stress (i.e., cropping and deforestation). The studied soils correspond to nine different sites which differed in some features, such as the parent material, vegetation cover, or soil use and types. A methodological approach has been used that combines the classical physical and chemical study of soils with molecular characterization of the microbial assemblages using specific primers for Bacteria, Archaea and ectomycorrhizal Fungi. In agreement with previous studies within the region, physical, chemical and biological characteristics of soils varied notably depending on these factors. Microbial biomass, soil organic matter, and moisture, decreased in soils as deforestation increased, even in those partially degraded to substitution shrubland. Major differences were observed in the microbial community structure between the mollic and rendzic Leptosols found in forest soils, and the skeletic and dolomitic Leptosols in substitute shrublands, as well as with the skeletic and dolomitic Leptosols and calcaric Regosols in dry croplands. Forest soils displayed a higher microbial richness (OTU’s number) and biomass, as well as more stable and connected ecological networks. Here, we point out how human activities such as agriculture and other effects of deforestation led to changes in soil properties, thus affecting its quality driving changes in their microbial diversity and biomass patterns. Our findings demonstrate the potential risk that the replacement of forest areas may have in the conservation of the soil’s microbiota pool, both active and passive, which are basic for the maintenance of biogeochemical processes.

Microbial response to carbon and nutrient additions in boreal forest soils and coversoils used during post-mining reclamation

2020 ◽  
Vol 100 (1) ◽  
pp. 69-80 ◽  
Author(s):  
Justine Lejoly ◽  
Sylvie A. Quideau ◽  
Frédéric Rees
Keyword(s):  
Organic Matter ◽  
Community Structure ◽  
Microbial Community ◽  
Microbial Communities ◽  
Forest Soils ◽  
Microbial Community Structure ◽  
Priming Effect ◽  
Phospholipid Fatty Acid ◽  
Natural Forest ◽  
Glucose Addition

Two types of organic-matter-rich coversoils are used during reclamation in the oil sands region of Alberta: forest floor material (FFM) salvaged from upland forests, and peat material (PM) salvaged from boreal wetlands. In this study, we tested the hypothesis that carbon (C) and nutrient availability may limit microbial activity in these reclamation materials by measuring their response to either 13C-labeled glucose or NPKS addition. Coversoil materials were compared with two natural forest soils corresponding to target sites for reclamation. A shift in microbial community structure (determined using phospholipid fatty acid analysis) was detected after both additions, but it was stronger with glucose than NPKS, especially for the two reclamation materials. For all soils, the increase in microbial respiration was stronger after glucose than after NPKS addition. The majority of CO2 originated from soil organic matter (SOM) for the natural forest soils but from glucose for the reclamation materials. In PM, glucose addition triggered SOM mineralization, as shown by a positive priming effect. Despite the absence of a priming effect for FFM, microbial communities incorporated higher rates of glucose into their biomass and respired double the amount of glucose compared with the other materials. Furthermore, the overall microbial community structure in the FFM became more similar to that of the natural forest soil materials following glucose addition. These findings indicate that C and NPKS limitations were stronger for the two reclamation materials than for the two natural forest soils. Furthermore, microbial communities in the two reclamation materials responded more readily to labile C than to NPKS addition.

scholarly journals Microbial Community Structure Affects Marine Dissolved Organic Matter Composition

2016 ◽  
Vol 3 ◽  
Author(s):  
Elizabeth B. Kujawinski ◽  
Krista Longnecker ◽  
Katie L. Barott ◽  
Ralf J. M. Weber ◽  
Melissa C. Kido Soule
Keyword(s):  
Organic Matter ◽  
Community Structure ◽  
Microbial Community ◽  
Dissolved Organic Matter ◽  
Microbial Community Structure ◽  
Organic Matter Composition

scholarly journals Stochastic Assembly Leads to Alternative Communities with Distinct Functions in a Bioreactor Microbial Community

mBio ◽  
2013 ◽  
Vol 4 (2) ◽  
Author(s):  
Jizhong Zhou ◽  
Wenzong Liu ◽  
Ye Deng ◽  
Yi-Huei Jiang ◽  
Kai Xue ◽  
...  
Keyword(s):  
Community Structure ◽  
Microbial Community ◽  
Microbial Diversity ◽  
Microbial Community Structure ◽  
Community Assembly ◽  
Ecosystem Functioning ◽  
Dominant Role ◽  
Microbial Biodiversity ◽  
Stochastic Assembly

ABSTRACTThe processes and mechanisms of community assembly and its relationships to community functioning are central issues in ecology. Both deterministic and stochastic factors play important roles in shaping community composition and structure, but the connection between community assembly and ecosystem functioning remains elusive, especially in microbial communities. Here, we used microbial electrolysis cell reactors as a model system to examine the roles of stochastic assembly in determining microbial community structure and functions. Under identical environmental conditions with the same source community, ecological drift (i.e., initial stochastic colonization) and subsequent biotic interactions created dramatically different communities with little overlap among 14 identical reactors, indicating that stochastic assembly played dominant roles in determining microbial community structure. Neutral community modeling analysis revealed that deterministic factors also played significant roles in shaping microbial community structure in these reactors. Most importantly, the newly formed communities differed substantially in community functions (e.g., H2production), which showed strong linkages to community structure. This study is the first to demonstrate that stochastic assembly plays a dominant role in determining not only community structure but also ecosystem functions. Elucidating the links among community assembly, biodiversity, and ecosystem functioning is critical to understanding ecosystem functioning, biodiversity preservation, and ecosystem management.IMPORTANCEMicroorganisms are the most diverse group of life known on earth. Although it is well documented that microbial natural biodiversity is extremely high, it is not clear why such high diversity is generated and maintained. Numerous studies have established the roles of niche-based deterministic factors (e.g., pH, temperature, and salt) in shaping microbial biodiversity, the importance of stochastic processes in generating microbial biodiversity is rarely appreciated. Moreover, while microorganisms mediate many ecosystem processes, the relationship between microbial diversity and ecosystem functioning remains largely elusive. Using a well-controlled laboratory system, this study provides empirical support for the dominant role of stochastic assembly in creating variations of microbial diversity and the first explicit evidence for the critical role of community assembly in influencing ecosystem functioning. The results presented in this study represent important contributions to the understanding of the mechanisms, especially stochastic processes, involved in shaping microbial biodiversity.

Post-fire vegetative dynamics as drivers of microbial community structure and function in forest soils

2005 ◽  
Vol 220 (1-3) ◽  
pp. 166-184 ◽  
Author(s):  
Stephen C. Hart ◽  
Thomas H. DeLuca ◽  
Gregory S. Newman ◽  
M. Derek MacKenzie ◽  
Sarah I. Boyle
Keyword(s):  
Community Structure ◽  
Microbial Community ◽  
Forest Soils ◽  
Microbial Community Structure ◽  
Structure And Function ◽  
And Function

Land use change in Amazonian Dark Earth and Acrisol: Responses of organic carbon, organic matter composition and microbial carbon utilisation

2020 ◽  
Author(s):  
Klaus Jarosch ◽  
Luis Carlos Colocho Hurtarte ◽  
Konstantin Gavazov ◽  
Aleksander Westphal Muniz ◽  
Christoph Müller ◽  
...  
Keyword(s):  
Land Use ◽  
Organic Matter ◽  
Community Structure ◽  
Microbial Community ◽  
Organic Carbon ◽  
Land Use Change ◽  
Microbial Community Structure ◽  
Secondary Forest ◽  
Soil Types ◽  
Amazonian Dark Earth

<p>The conversion of tropical forest for cassava cultivation is widely known to decrease the soil organic matter (OM) and nutrient contents of highly weathered soils in the tropics. Amazonian Dark Earth (ADE) might be affected less due to their historical anthropogenic amelioration with e.g. charcoal, ceramics and bones, leading to higher soil OM and nutrient concentrations. In this study, we analysed the effect of land use change on the OM dynamics and its composition under tropical conditions, using ADE and an adjacent Acrisol (ACR) as model systems. Soil samples were obtained south of Manaus (Brazil), from a secondary forest and an adjacently located 40-year-old cassava plantation. The land use change induced a severe decrease of organic carbon (OC) concentrations in ADE (from 35 to 15 g OC kg<sup>‑1</sup>) while OC in the adjacent ACR was less affected (18 to 16 g OC kg<sup>‑1</sup>). Soils were analysed by <sup>13</sup>C NMR spectroscopy to obtain information on how the conversion of secondary forest to cassava affected the chemical composition of OM. Our results show that land use change induces differences in the OM composition: The OM in ADE changes to a more decomposed state (increase of alkyl:O/N-alkyl ratio) whereas the OM in ACR changes to a less decomposed state (decrease of alkyl:O/N-alkyl ratio). According to a molecular mixing model, land use change influenced mostly the proportion of lipids, which might be related with a change of the plant input. The incubation of the soils with <sup>13</sup>C glucose enabled resolving how soil microorganisms were affected by land use change. In both soil types ADE and ACR, land use change caused a reduction of the total <sup>13</sup>C glucose respiration by approximately one third in a 7-days incubation, implying lower microbial activity. Microorganisms in both soil types appear to be more readily active in soils under forest, since we observed a distinct lag time between <sup>13</sup>C glucose addition and respiration under cassava planation. This indicated differences in microbial community structure, which we will assess further by determining the <sup>13</sup>C label uptake by the microbial biomass and the microbial community structure using <sup>13</sup>C PLFA analysis. Preliminary results from synchrotron-based STXM demonstrate a distinct arrangement of OM at fine-sized charcoal-particle interfaces. Samples of soils receiving <sup>13</sup>C label will be further analysed by NanoSIMS with the hypothesis that charcoal interfaces foster nutrient dynamics at the microscale. Despite the high loss of OC in the ameliorated ADE through land use change, the remaining OM might improve the nutrient availability thanks to charcoal interactions compared to the ACR. Our results contribute to a better understanding of the sensitivity of OM upon land use change and how the microbial community is responding to land use change in highly weathered tropical soils.</p>

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