Faculty Opinions recommendation of Required enhancer-matrin-3 network interactions for a homeodomain transcription program.

Author(s):  
Andrew D Sharrocks
Nature ◽  
2014 ◽  
Vol 514 (7521) ◽  
pp. 257-261 ◽  
Author(s):  
Dorota Skowronska-Krawczyk ◽  
Qi Ma ◽  
Michal Schwartz ◽  
Kathleen Scully ◽  
Wenbo Li ◽  
...  

2014 ◽  
Vol 35 (12) ◽  
pp. 2679-2686 ◽  
Author(s):  
Lorena Alonso-Alconada ◽  
Nuria Eritja ◽  
Laura Muinelo-Romay ◽  
Jorge Barbazan ◽  
Rafael Lopez-Lopez ◽  
...  

2021 ◽  
Vol 7 (27) ◽  
pp. eabf5733
Author(s):  
Rui Lopes ◽  
Kathleen Sprouffske ◽  
Caibin Sheng ◽  
Esther C. H. Uijttewaal ◽  
Adriana Emma Wesdorp ◽  
...  

Millions of putative transcriptional regulatory elements (TREs) have been cataloged in the human genome, yet their functional relevance in specific pathophysiological settings remains to be determined. This is critical to understand how oncogenic transcription factors (TFs) engage specific TREs to impose transcriptional programs underlying malignant phenotypes. Here, we combine cutting edge CRISPR screens and epigenomic profiling to functionally survey ≈15,000 TREs engaged by estrogen receptor (ER). We show that ER exerts its oncogenic role in breast cancer by engaging TREs enriched in GATA3, TFAP2C, and H3K27Ac signal. These TREs control critical downstream TFs, among which TFAP2C plays an essential role in ER-driven cell proliferation. Together, our work reveals novel insights into a critical oncogenic transcription program and provides a framework to map regulatory networks, enabling to dissect the function of the noncoding genome of cancer cells.


Author(s):  
Fahu He ◽  
Kanako Kuwasako ◽  
Masayuki Takizawa ◽  
Mari Takahashi ◽  
Kengo Tsuda ◽  
...  

2020 ◽  
Vol 11 ◽  
Author(s):  
Madelyn Castro ◽  
Nisha Venkateswaran ◽  
Samuel T. Peters ◽  
David R. Deyle ◽  
Matthew Bower ◽  
...  

Frontotemporal dementia (FTD) rarely occurs in individuals under the age of 30, and genetic causes of early-onset FTD are largely unknown. The current report follows a 27 year-old patient with no significant past medical history presenting with two years of progressive changes in behavior, rushed speech, verbal aggression, and social withdrawal. MRI and FDG-PET imaging of the brain revealed changes maximally in the frontal and temporal lobes, which along with the clinical features, are consistent with behavioral variant FTD. Next generation sequencing of a panel of 28 genes associated with dementia and amyotrophic lateral sclerosis (ALS) initially revealed a duplication of exon 15 in Matrin-3 (MATR3). Whole genome sequencing determined that this genetic anomaly was, in fact, a sequence corresponding with full-length MATR3 variant 5 inserted into chromosome 12, indicating retrotransposition from a messenger RNA intermediate. To our knowledge, this is a novel mutation of MATR3, as the majority of mutations in MATR3 linked to FTD-ALS are point mutations. Genomic DNA analysis revealed that this mutation is also present in one unaffected first-degree relative and one unaffected second-degree relative. This suggests that the mutation is either a disease-causing mutation with incomplete penetrance, which has been observed in heritable FTD, or a benign variant. Retrotransposons are not often implicated in neurodegenerative diseases; thus, it is crucial to clarify the potential role of this MATR3 variant 5 retrotransposition in early-onset FTD.


2019 ◽  
Vol 99 (7) ◽  
pp. 1030-1040 ◽  
Author(s):  
M. Carolina Gallego-Iradi ◽  
Haley Strunk ◽  
Anthony M. Crown ◽  
Rachel Davila ◽  
Hilda Brown ◽  
...  

2015 ◽  
Vol 22 (3) ◽  
pp. 369-386 ◽  
Author(s):  
Rosalinda M Savoy ◽  
Liqun Chen ◽  
Salma Siddiqui ◽  
Frank U Melgoza ◽  
Blythe Durbin-Johnson ◽  
...  

Prostate cancer (PCa) progression is regulated by the androgen receptor (AR); however, patients undergoing androgen-deprivation therapy (ADT) for disseminated PCa eventually develop castration-resistant PCa (CRPC). Results of previous studies indicated thatAR, a transcription factor, occupies distinct genomic loci in CRPC compared with hormone-naïve PCa; however, the cause of this distinction was unknown. The E3 ubiquitin ligaseNrdp1is a model AR target modulated by androgens in hormone-naïve PCa but not in CRPC. UsingNrdp1, we investigated how AR switches transcription programs during CRPC progression. The proximalNrdp1promoter contains an androgen response element (ARE); we demonstrated AR binding to this ARE in androgen-sensitive PCa. Analysis of hormone-naive human prostatectomy specimens revealed correlation betweenNrdp1and AR expression, supporting AR regulation of NRDP1 levels in androgen-sensitive tissue. However, despite sustained AR levels, AR binding to theNrdp1promoter andNrdp1expression were suppressed in CRPC. Elucidation of the suppression mechanism demonstrated correlation of NRDP1 levels with nuclear localization of the scaffolding protein filamin A (FLNA) which, as we previously showed, is itself repressed following ADT in many CRPC tumors. Restoration of nuclear FLNA in CRPC stimulated AR binding toNrdp1ARE, increased its transcription, and augmented NRDP1 protein expression and responsiveness to ADT, indicating that nuclear FLNA controls AR-mediated androgen-sensitiveNrdp1transcription. Expression of other AR-regulated genes lost in CRPC was also re-established by nuclear FLNA. Thus, our results indicate that nuclear FLNA promotes androgen-dependent AR-regulated transcription in PCa, while loss of nuclear FLNA in CRPC alters the AR-regulated transcription program.


2015 ◽  
Vol 24 (15) ◽  
pp. 4284-4295 ◽  
Author(s):  
Frederic F. Depreux ◽  
Megan J. Puckelwartz ◽  
Aleksandra Augustynowicz ◽  
Don Wolfgeher ◽  
Christine M. Labno ◽  
...  
Keyword(s):  
Lamin A ◽  

2016 ◽  
Vol 2 (1) ◽  
Author(s):  
Jing Xu ◽  
Li Li ◽  
Jie Xiong ◽  
Aaron denDekker ◽  
Andrew Ye ◽  
...  

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