Faculty Opinions recommendation of Exploring the "minimal" structure of a functional ADAMTS13 by mutagenesis and small-angle X-ray scattering.

Author(s):  
Toshiyuki Miyata
Blood ◽  
2019 ◽  
Vol 133 (17) ◽  
pp. 1909-1918 ◽  
Author(s):  
Jian Zhu ◽  
Joshua Muia ◽  
Garima Gupta ◽  
Lisa A. Westfield ◽  
Karen Vanhoorelbeke ◽  
...  

Abstract Human ADAMTS13 is a multidomain protein with metalloprotease (M), disintegrin-like (D), thrombospondin-1 (T), Cys-rich (C), and spacer (S) domains, followed by 7 additional T domains and 2 CUB (complement components C1r and C1s, sea urchin protein Uegf, and bone morphogenetic protein-1) domains. ADAMTS13 inhibits the growth of von Willebrand factor (VWF)–platelet aggregates by cleaving the cryptic Tyr1605-Met1606 bond in the VWF A2 domain. ADAMTS13 is regulated by substrate-induced allosteric activation; without shear stress, the distal T8-CUB domains markedly inhibit VWF cleavage, and binding of VWF domain D4 or selected monoclonal antibodies (MAbs) to distal ADAMTS13 domains relieves this autoinhibition. By small angle X-ray scattering (SAXS), ADAMTS13 adopts a hairpin-like conformation with distal T7-CUB domains close to the proximal MDTCS domains and a hinge point between T4 and T5. The hairpin projects like a handle away from the core MDTCS and T7-CUB complex and contains distal T domains that are dispensable for allosteric regulation. Truncated constructs that lack the T8-CUB domains are not autoinhibited and cannot be activated by VWF D4 but retain the hairpin fold. Allosteric activation by VWF D4 requires T7, T8, and the 58–amino acid residue linker between T8 and CUB1. Deletion of T3 to T6 produced the smallest construct (delT3-6) examined that could be activated by MAbs and VWF D4. Columba livia (pigeon) ADAMTS13 (pADAMTS13) resembles human delT3-6, retains normal activation by VWF D4, and has a SAXS envelope consistent with amputation of the hairpin containing the dispensable T domains of human ADAMTS13. Our findings suggest that human delT3-6 and pADAMTS13 approach a “minimal” structure for allosterically regulated ADAMTS13.


Blood ◽  
2016 ◽  
Vol 128 (22) ◽  
pp. 254-254
Author(s):  
Jian Zhu ◽  
Joshua Muia ◽  
Louis Deforche ◽  
Karen Vanhoorelbeke ◽  
Niraj H. Tolia ◽  
...  

Abstract Introduction: ADAMTS13 is a multidomain protein with metalloprotease (M), disintegrin-like (D), thrombospondin-1 (T), Cys-rich (C) and spacer (S) domains, followed by 7 T domains and 2 CUB domains. ADAMTS13 cleaves the cryptic Tyr1605-Met1606 bond in the A2 domain of von Willebrand factor (VWF), which inhibits the growth of platelet-rich thrombi. When subjected to tensile stress in solution, bound to platelets, or on endothelial cell surfaces, VWF interacts with multiple exosites on ADAMTS13, changing the conformation of both proteins. These close contacts enhance the specific interaction between ADAMTS13 and VWF in vivo. Interactions between VWF and proximal MDTCS domains of ADAMTS13 have been investigated extensively. ADAMTS13 distal domains T8-CUB2 are required to bind the D4 domain of VWF, and the CUB domains promote the cleavage of platelet-decorated VWF strings. Using mutagenesis, small-angle X-ray scattering (SAXS) and enzyme kinetics, we have shown that ADAMTS13 adopts a folded conformation with distal T8-CUB2 domains close to the proximal MDTCS domains and a hinge point between the T4 and T5 domains. We have used internal deletions of T domains to identify a possible "minimal" structure for a functional and stably folded ADAMTS13. Methods: Recombinant human hADAMTS13, pigeon pADAMTS13, and various T domain deletion mutations were produced in T-Rex 293 cell lines and purified to homogeneity. Similar inactive variants of each protein were prepared with the mutation E225Q, which abolishes catalytic activity but does not affect protein folding. SAXS data were collected at the SIBYLS beamline (Lawrence Berkeley National Laboratory) for ADAMTS13 and deletion variants. The radius of gyration (Rg) and maximum particle size (Dmax) were calculated from scattering profiles using DATGNOM. Ab initio envelopes were generated from scattering profiles using DAMMIN. A molecular model of ADAMTS13 was built from crystal structures of ADAMTS4 MD domains (2rjp) and ADAMTS13 DTCS domains (3ghm), and using HHpred to model distal T domains, CUB domains, and linkers after T4 and T8. ADAMTS13 activity assays were performed at pH 6.0 and pH 7.4 with the fluorogenic substrate FRETS-rVWF71. Monoclonal antibodies (Mabs) against different distal domains of ADAMTS13 and recombinant VWF D4 domain were added to assess allosteric activation. Results: Rg and Dmax of ADAMTS13 variants are shown in Table 1. For Del4L, with deletion of linker region between T4 and T5, values of Rg and Dmax are ~5% smaller than for full length ADAMTS13. Deletion of both T4 and the linker region (Del4pL), reduced Rg and Dmax ~10%. Deletions of distal domains (Del7, Del8, Del8L, and Del8pL) that are spatially close to the proximal domains increased Rg and Dmax ~14%, which is consistent with partial unfolding of the condensed full length ADAMTS13 structure. Del2to8, which lacks all distal T domains between S and CUBs, aggregated in solution. Del2to7, which retains only T8, has Rg and Dmax 15% and 17% smaller than ADAMTS13, respectively. The kcat values for all variants at pH 7.4 are consistent with autoinhibition of the proximal MDTCS domains by any remaining distal domains. The additional of Mabs recognizing T7, T8 and CUBs slightly (~1.5 fold) activated individual deletion mutants. Del2to7, Del2to8, and Del3to6 had similar activities when compared with ADAMTS13. Though Del2to7 and Del3to6 could be activated by Mabs ~3 fold, only Del3to6 could be activated slightly ~1.3-fold by D4 domain, compared to 1.8-fold activation of hADAMTS13. pADAMTS13 is structurally similar to human Del3to6, and was activated by D4 domain ~4 fold but not by Mabs. Fitting to the ab initio envelopes show a folded conformation for hADAMTS13, Del7, Del8 and Del8L (Figure 1), consistent with a hinge in the flexible linker after T4. pADAMTS13 and Del2to7 had more compact envelopes, consistent with removal of most of the folded segment present in full length hADAMTS13. Conclusions: Deletion of individual distal T domains does not relieve the autoinhibition of ADAMTS13. Del3to6 is the only human deletion mutant examined that can be activated by both Mabs and VWF D4 domain, similar to hADAMTS13. pADAMTS13 is structurally similar to Del3to6, retains normal activation by VWF D4, and shows a SAXS envelope consistent with a truncated version of hADAMTS13. Our findings suggest that Del3to6 and pADAMTS13 represent the "minimal" structure of allosterically-regulated, functional ADAMTS13. Disclosures Sadler: Ablynx: Consultancy; 23andMe: Consultancy; BioMarin: Consultancy.


2019 ◽  
Author(s):  
Christian Prehal ◽  
Aleksej Samojlov ◽  
Manfred Nachtnebel ◽  
Manfred Kriechbaum ◽  
Heinz Amenitsch ◽  
...  

<b>Here we use in situ small and wide angle X-ray scattering to elucidate unexpected mechanistic insights of the O2 reduction mechanism in Li-O2 batteries.<br></b>


2019 ◽  
Author(s):  
Hao Wu ◽  
Jeffrey Ting ◽  
Siqi Meng ◽  
Matthew Tirrell

We have directly observed the <i>in situ</i> self-assembly kinetics of polyelectrolyte complex (PEC) micelles by synchrotron time-resolved small-angle X-ray scattering, equipped with a stopped-flow device that provides millisecond temporal resolution. This work has elucidated one general kinetic pathway for the process of PEC micelle formation, which provides useful physical insights for increasing our fundamental understanding of complexation and self-assembly dynamics driven by electrostatic interactions that occur on ultrafast timescales.


1981 ◽  
Vol 46 (7) ◽  
pp. 1675-1681 ◽  
Author(s):  
Josef Baldrian ◽  
Božena N. Kolarz ◽  
Henrik Galina

Porosity variations induced by swelling agent exchange were studied in a styrene-divinylbenzene copolymer. Standard methods were used in the characterization of copolymer porosity in the dry state and the results were compared with related structural parameters derived from small angle X-ray scattering (SAXS) measurements as developed for the characterization of two-phase systems. The SAXS method was also used for porosity determination in swollen samples. The differences in the porosity of dry samples were found to be an effect of the drying process, while in the swollen state the sample swells and deswells isotropically.


2020 ◽  
Vol 91 (12) ◽  
pp. 123501
Author(s):  
M. Šmíd ◽  
C. Baehtz ◽  
A. Pelka ◽  
A. Laso García ◽  
S. Göde ◽  
...  

2021 ◽  
Vol 14 (1) ◽  
Author(s):  
Susyn Joan Kelly ◽  
Lizette duPlessis ◽  
John Soley ◽  
Frazer Noble ◽  
Hannah Carolyn Wells ◽  
...  

Abstract Objective Small angle X-ray scattering (SAXS) analysis is a sensitive way of determining the ultrastructure of collagen in tissues. Little is known about how parameters measured by SAXS are affected by preservatives commonly used to prevent autolysis. We determined the effects of formalin, glutaraldehyde, Triton X and saline on measurements of fibril diameter, fibril diameter distribution, and D-spacing of corneal collagen using SAXS analysis. Results Compared to sections of sheep and cats’ corneas stored frozen as controls, those preserved in 5% glutaraldehyde and 10% formalin had significantly larger mean collagen fibril diameters, increased fibril diameter distribution and decreased D-spacing. Sections of corneas preserved in Triton X had significantly increased collagen fibril diameters and decreased fibril diameter distribution. Those preserved in 0.9% saline had significantly increased mean collagen fibril diameters and decreased diameter distributions. Subjectively, the corneas preserved in 5% glutaraldehyde and 10% formalin maintained their transparency but those in Triton X and 0.9% saline became opaque. Subjective morphological assessment of transmission electron microscope images of corneas supported the SAXS data. Workers using SAXS analysis to characterize collagen should be alerted to changes that can be introduced by common preservatives in which their samples may have been stored.


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