Alteration of Nickel-Binding Proteins in Nickel-Resistant Cells

1989 ◽  
Vol 1 (6) ◽  
pp. 351-358 ◽  
Author(s):  
Xin Wei Wang ◽  
Max Costa
1981 ◽  
Vol 27 (5) ◽  
pp. 553-557
Author(s):  
C. R. MacKenzie ◽  
I. J. McDonald ◽  
K. G. Johnson

The β-lactam sensitivities of enzymes involved in peptidoglycan synthesis were examined in two strains of Neisseria 'enitrificans having widely disparate degrees of ampicillin sensitivity. One strain of N. denitrificans was 400 times more resistant) ampicillin than the other; the former is known to have altered pencillin-binding proteins. No differences in the levels of ensitivities of total peptidoglycan synthesis as measured by the incorporation of glutamate into peptidoglycan, or of D-alanine arboxypeptidase, were observed between the two strains. However, the rate of glutamate incorporation into peptidoglycan by garithmic growth phase cells was somewhat less for the ampicillin-resistant cells than for the parent cells.


2018 ◽  
Vol 62 (2) ◽  
pp. 59-66
Author(s):  
J. Šimková ◽  
M. Milkovičová ◽  
M. Valko-Rokytovská ◽  
Z. Kostecká ◽  
E. Bencúrová ◽  
...  

Abstract Nickel-binding proteins play an important role in the biological processes and can also be utilized in several fields of biotechnology. This study was focused on analysing the nickel-binding proteins from the blood sera of humans (Homo sapiens), cattle (Bos taurus), sheep (Ovis aries), red deer (Cervus elaphus), mouflon (Ovis orientalis), fallow deer (Dama dama), horses (Equus ferus caballus), pigs (Sus scrofa domesticus), wildboars (Sus scrofa), brown bears (Ursus arctos) and pheasants (Phasianus colchicus). The presence of higher abundance proteins in the blood serum, such as albumins, may mask the detection of lower abundance proteins. The samples were depleted from these higher abundance proteins to facilitate the detection of those with lower abundance. For the characterization of these proteins, nickel cations bound to tetradentate ligand nitrilotriacetic acid(Ni-NTA)immobilized on agarose beads were incubated with animal sera to capture nickel-binding proteins and subsequently the proteins were eluted and fractionated on sodium dodecyl sulphate-polyacrylamide gel electrophoresis (SDS-PAGE). The results showed a set of nickel-binding proteins with various molecular weights within different animal species. A unique ~42 kDa nickel-binding protein in the brown bear serum, which was not present in any of the other species, was further characterized and identified by matrix-assisted laser desorption/ionization-time-of-flight/mass spectrometry (MALDI-TOF/MS). This protein was identified as ahaptoglobin-like protein. This result may provide some valuable clue for the physiological difference in the metal binding proteins in the serum of Ursus arctos and other animals.


2020 ◽  
Author(s):  
Jun Koseki ◽  
Haruka Hirose ◽  
Masamitsu Konno ◽  
Ayumu Asai ◽  
Takahito Ohshiro ◽  
...  

Abstract Theoretical methods such as molecular mechanics and molecular dynamics are very useful in understanding the fundamentals of life sciences. We have established a procedure to predict the structure of a complex of p53 with an arbitrary DNA complex, and have made it possible to predict the binding energy of p53 to DNA from the configuration of molecular dynamics simulations of the complex structure. We performed validation studies using FTD, an anti-tumor drug that exerts its pharmacological effect by incorporation into DNA, and confirmed that the binding affinity of the p53-binding BAX sequence to the p53 tetramer was increased by FTD incorporation. This indicates that FTD tends to interact strongly with DNA-binding proteins when incorporated into DNA. On the other hand, the binding affinity of FTD-containing DNA was greatly reduced in p53-binding sequences extracted from FTD-resistant cells compared to that of normal DNA. In other words, it was suggested that randomly substituted thymidine for FTDs in resistant cells may have acquired resistance by entering positions that prevented binding to DNA-binding proteins. We believe that this procedure is a versatile procedure that can take into account the binding energies of not only the p53 protein, but also other DNA-binding proteins and other biomolecules, thus increasing the importance of computational science in the life sciences.


1999 ◽  
Vol 56 (7-8) ◽  
pp. 604-625 ◽  
Author(s):  
R. K. Watt ◽  
P. W. Ludden

2013 ◽  
pp. 1521-1528
Author(s):  
Anne Volbeda ◽  
Juan C. Fontecilla-Camps

Structure ◽  
2014 ◽  
Vol 22 (10) ◽  
pp. 1421-1432 ◽  
Author(s):  
Hugo Lebrette ◽  
Céline Brochier-armanet ◽  
Barbara Zambelli ◽  
Hilde de Reuse ◽  
Elise Borezée-Durant ◽  
...  

Metallomics ◽  
2013 ◽  
Vol 5 (7) ◽  
pp. 928 ◽  
Author(s):  
Xuesong Sun ◽  
Guangchuang Yu ◽  
Qian Xu ◽  
Nan Li ◽  
Chuanle Xiao ◽  
...  

Author(s):  
J. Jakana ◽  
M.F. Schmid ◽  
P. Matsudaira ◽  
W. Chiu

Actin is a protein found in all eukaryotic cells. In its polymerized form, the cells use it for motility, cytokinesis and for cytoskeletal support. An example of this latter class is the actin bundle in the acrosomal process from the Limulus sperm. The different functions actin performs seem to arise from its interaction with the actin binding proteins. A 3-dimensional structure of this macromolecular assembly is essential to provide a structural basis for understanding this interaction in relationship to its development and functions.


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