Invasive ants reduce abundance of small rainforest skinks

Invasive ants are among the world’s most damaging invasive species, often directly or indirectly affecting native fauna. Insecticidal baits are the main method for suppressing or eradicating invasive ant populations, but their use must be considered against potential for unintended effects on native organisms. The invasive yellow crazy ant (Anoplolepis gracillipes) is widespread in the tropics, particularly on islands, where they have displaced a range of invertebrates. Effects of this ant on vertebrates, and in continental ecosystems generally, are less studied. We investigated the effects of yellow crazy ants and bait application on rainforest skinks and their invertebrate prey. We compared skink and skink prey abundance across four replicated rainforest site categories: high and low yellow crazy ant sites had both been baited but differed in yellow crazy ant activity; control sites had never had yellow crazy ants or been baited; and buffer sites had never had yellow crazy ants but had been baited. We recorded significantly lower abundance of two small skink species (Lygisaurus laevis and Saproscincus tetradactylus) in high yellow crazy ant sites compared to all other site categories. The differences persisted even after baiting reduced yellow crazy ant activity by 97.8% ± 0.04% (mean ± SD). A larger rainforest skink species (Carlia rubrigularis) was not negatively affected by yellow crazy ant invasion. Skink prey abundance was significantly lower in high yellow crazy ant sites compared to control sites and low yellow crazy ant sites, but not compared to buffer sites. These differences did not persist following baiting. We found no evidence that baiting negatively affects skinks or their invertebrate prey. Our data suggest that yellow crazy ants, but not the bait used to treat them, pose a direct threat to small rainforest skinks.

Proteomic Analysis of a Syntrophic Coculture of Syntrophobacter fumaroxidans MPOBT and Geobacter sulfurreducens PCAT

We established a syntrophic coculture of Syntrophobacter fumaroxidans MPOBT (SF) and Geobacter sulfurreducens PCAT (GS) growing on propionate and Fe(III). Neither of the bacteria was capable of growth on propionate and Fe(III) in pure culture. Propionate degradation by SF provides acetate, hydrogen, and/or formate that can be used as electron donors by GS with Fe(III) citrate as electron acceptor. Proteomic analyses of the SF-GS coculture revealed propionate conversion via the methylmalonyl-CoA (MMC) pathway by SF. The possibility of interspecies electron transfer (IET) via direct (DIET) and/or hydrogen/formate transfer (HFIT) was investigated by comparing the differential abundance of associated proteins in SF-GS coculture against (i) SF coculture with Methanospirillum hungatei (SF-MH), which relies on HFIT, (ii) GS pure culture growing on acetate, formate, hydrogen as propionate products, and Fe(III). We noted some evidence for DIET in the SF-GS coculture, i.e., GS in the coculture showed significantly lower abundance of uptake hydrogenase (43-fold) and formate dehydrogenase (45-fold) and significantly higher abundance of proteins related to acetate metabolism (i.e., GltA; 62-fold) compared to GS pure culture. Moreover, SF in the SF-GS coculture showed significantly lower abundance of IET-related formate dehydrogenases, Fdh3 (51-fold) and Fdh5 (29-fold), and the rate of propionate conversion in SF-GS was 8-fold lower than in the SF-MH coculture. In contrast, compared to GS pure culture, we found lower abundance of pilus-associated cytochrome OmcS (2-fold) and piliA (5-fold) in the SF-GS coculture that is suggested to be necessary for DIET. Furthermore, neither visible aggregates formed in the SF-GS coculture, nor the pili-E of SF (suggested as e-pili) were detected. These findings suggest that the IET mechanism is complex in the SF-GS coculture and can be mediated by several mechanisms rather than one discrete pathway. Our study can be further useful in understanding syntrophic propionate degradation in bioelectrochemical and anaerobic digestion systems.

Keystone Species on New Zealand Offshore Islands: Ecological Relationships of Seabirds, Rats, Reptiles and Invertebrates on Cook Strait Islands

<p>The influence of seabirds and rats on island ecosystems was measured to assess the applicability of the keystone species concept for ecology and conservation. Pitfall trapping for lizards and small invertebrates, soil sampling and stable isotope analysis was used to assess the roles played by seabirds and rats on six islands in the Marlborough Sounds. Both abundance and ordinal richness of invertebrates were found to be greater on islands with seabirds than on seabird-free islands. Although lizard distribution was strongly influenced by species-specific habitat requirements, the greatest numbers of lizards recorded in this study were found on seabird-inhabited islands. Although significant differences were not found, the C:N ratio of soils in seabird colonies in this study and at other sites was lower than that at seabird-free sites. Nitrogen stable isotope analysis showed that a proportion of the diet of animals at a range of different levels throughout the island foodweb was derived from seabirds. Rats were found to negate many of the positive effects of seabirds. As well as significantly lower numbers of seabirds, islands with rats had lower abundance of lizards and lower abundance and diversity of mall invertebrates than rat-free islands. Although both seabirds and rats play important roles in island ecosystems, neither conformed to a definition of a keystone species. Theoretical and practical problems were found with the calculation of keystone status for different taxa. Given that important species cannot be shown to be keystones, and that calculation is technically difficult (and maybe impossible) the classification of seabirds, rats, or any other species as keystone is not likely to advance theoretical ecology or assist with conservation management. Attempts to define keystone species were found to be unsuccessful and abandonment of the term was advised.</p>

Keystone Species on New Zealand Offshore Islands: Ecological Relationships of Seabirds, Rats, Reptiles and Invertebrates on Cook Strait Islands

<p>The influence of seabirds and rats on island ecosystems was measured to assess the applicability of the keystone species concept for ecology and conservation. Pitfall trapping for lizards and small invertebrates, soil sampling and stable isotope analysis was used to assess the roles played by seabirds and rats on six islands in the Marlborough Sounds. Both abundance and ordinal richness of invertebrates were found to be greater on islands with seabirds than on seabird-free islands. Although lizard distribution was strongly influenced by species-specific habitat requirements, the greatest numbers of lizards recorded in this study were found on seabird-inhabited islands. Although significant differences were not found, the C:N ratio of soils in seabird colonies in this study and at other sites was lower than that at seabird-free sites. Nitrogen stable isotope analysis showed that a proportion of the diet of animals at a range of different levels throughout the island foodweb was derived from seabirds. Rats were found to negate many of the positive effects of seabirds. As well as significantly lower numbers of seabirds, islands with rats had lower abundance of lizards and lower abundance and diversity of mall invertebrates than rat-free islands. Although both seabirds and rats play important roles in island ecosystems, neither conformed to a definition of a keystone species. Theoretical and practical problems were found with the calculation of keystone status for different taxa. Given that important species cannot be shown to be keystones, and that calculation is technically difficult (and maybe impossible) the classification of seabirds, rats, or any other species as keystone is not likely to advance theoretical ecology or assist with conservation management. Attempts to define keystone species were found to be unsuccessful and abandonment of the term was advised.</p>

The Gut Microbiota in Patients with Polycythemia Vera: Novel Vs. Conventional Treatments

Background: The human gut microbiota (the population of microorganisms present) is important for digestion of food but also for development of the host immune system and protection against pathogens. Changes in the gut microbiota are linked to several inflammatory diseases such as diabetes, atopic diseases and Alzheimer's disease. Polycythemia vera (PV) is one of the Philadelphia chromosome negative classical myeloproliferative neoplasms (MPNs), which also include essential thrombocythemia (ET) and primary myelofibrosis (PMF). MPNs are increasingly recognized as inflammatory driven diseases. The role of the gut microbiota in patients with MPNs is largely unknown. In a small study (n=25) the microbiota of MPN patients had higher levels of Prevotellaceae compared to healthy controls, and differed significantly in composition between patients treated with hydroxyurea and ruxolitinib. Since MPNs are likely to be driven by chronic inflammation and the gut microbiota influences the immune system, investigations of the PV-microbiota are highly relevant. We compared the microbiota in a cross-sectional study of patients with PV stratified into five different treatment groups. Method and Material: Patients above 18 years diagnosed with PV, according to the 2016 World Health Organization (WHO) classification, were invited to participate in the study. The exclusion criteria were: pregnancy, use of antibiotics within the last 2 months, change in treatment within the last 3 months or inability to understand the oral and written information. Clinical and biochemical data for each patient were collected retrospectively and included co-morbidities, smoking status, anti-inflammatory treatment, hypertension, haematological parameters, haematological treatment, body mass index (BMI), among others. Stool samples, no more than 6 hours old were stored at -80°C. DNA was extracted by using the EMAG® Nucleic acid extraction system, [bioMérieux] according to the manufacturer's instructions. The bacterial microbiota was characterized by amplicon-based next generation sequencing of the V3-V4 region of the 16S ribosomal unit using a MiSeq instrument, Illumina. BION was used to assign taxonomic classification. The patients were divided into 5 groups according to treatment: no treatment (n=18), hydroxyurea (n=33), PEG-interferon-α2 (IFN) (n=23), IFN combined with ruxolitinib (COMBI) (n= 21) and patients treated with other combinations e.g. ruxolitinib, anagrelide, hydroxyurea combined with IFN hydroxyurea combined anagrelide, or hydroxyurea combined with ruxolitinib, (n=11). The alpha diversity was measured using the Shannon diversity index, and compared with a pairwise Wilcoxon test adjusted for multiple testing. Beta diversity (difference between the samples) was visualised by a PCoA plot, and compared using an ANOSIM test. Differential abundance analysis was performed by Linear discriminant analysis Effect Size (LEfSe). Results: In total, 116 patients with PV were included. Of these, 106 fulfilled the inclusion criteria (49 women and 57 men) and had a median age of 68 years (range: 31 - 85). The five treatment groups did not differ in alpha diversity. The bacterial composition differed slightly between IFN group and no treatment group (p=0.032, R=0.075), and between IFN and COMBI group (p= 0.031, R=0.054). Patients from the no treatment group had a higher relative abundance of the Bacteroides genus (39%) compared to the IFN group (14.7%) (p=0.003) and hydroxyurea group (23.1%) (p=0.047), but not the COMBI group (30.1%). A lower abundance of the Bacteroides genus was found in the IFN group compared to the COMBI group (p=0.004) and compared to the hydroxyurea group (p=0.04). Due to the small number of patients treated with other combinations, these were not included in the differential abundance analysis. Conclusions: Among the five treatment groups in patients with PV, the alpha diversity of the microbiota were similar, but the relative abundance of the Bacteroides genus in patients not receiving any treatment compared to patients treated with IFN and hydroxyurea was higher. A lower abundance of Bacteroides genus was seen in the IFN group compared to the COMBI group and compared to the hydroxyurea group. Whether these differences are explained as a treatment response to IFN or clinical parameters, such as comorbidities, age JAK2 allele burden or BMI need further investigations. Disclosures Hasselbalch: Novartis, AOP Orphan: Consultancy, Other: Advisory Board.

Clinical study showing a lower abundance of Neisseria in the oral microbiome aligns with low birth weight pregnancy outcomes

Objectives The objective of this study was to examine the association between the oral microbiome and pregnancy outcomes, specifically healthy or preterm low birth weight (PLBW) in individuals with and without periodontal disease (PD). Material and methods In this prospective clinical trial, we recruited 186 pregnant women, 17 of whom exhibited PD and delivered PLBW infants (PD-PLBW group). Of the remaining women, 155 presented PD and delivered healthy infants; 18 of these subjects with similar periodontal condition and age matched to the PD-PLBW group, and they became the PD-HD group. From the total group, 11 women exhibited healthy gingiva and had a healthy delivery (HD) and healthy infants (H-HD group), and 3 exhibited healthy gingiva and delivered PLBW infants (H-PLBW group). Periodontal parameters were recorded, and subgingival plaque and serum were collected during 26–28 gestational weeks. For the plaque samples, microbial abundance and diversity were accessed by 16S rRNA sequencing. Results Women with PD showed an enrichment in the genus Porphyromonas, Treponema, and Filifactor, whereas women with healthy gingiva showed an enrichment in Streptococcus, Actinomyces, and Corynebacterium, independently of the birth status. Although no significant difference was found in the beta diversity between the 4 groups, women that had PLBW infants presented a significantly lower abundance of the genus Neisseria, independently of PD status. Conclusion Lower levels of Neisseria align with preterm low birth weight in pregnant women, whereas a higher abundance of Treponema, Porphyromonas, Fretibacterium, and Filifactor and a lower abundance of Streptococcus may contribute to periodontal disease during pregnancy. Clinical relevance The oral commensal Neisseria have potential in the prediction of PLBW.

Rumen Sampling Methods Bias Bacterial Communities Observed

The rumen is a complex ecosystem that plays a critical role in our efforts to improve feed efficiency of cattle and reduce their environmental impacts. Sequencing of the 16S rRNA gene provides a powerful tool to survey shifts in the microbial community in response to feed additives and dietary changes. Oral stomach tubing a cow for a rumen sample is a rapid, cost-effective alternative to rumen cannulation for acquiring rumen samples. In this study, we determined how sampling method, as well as type of sample collected (liquid vs solid), bias the microbial populations observed. The abundance of major archaeal populations was not different at the family level in samples acquired via rumen cannula or stomach tube. Liquid samples were enriched for the order WCHB1-41 (phylum Kiritimatiellaeota) as well as the family Prevotellaceae and had significantly lower abundance of Lachnospiraceae compared with grab samples from the rumen cannula. Solid samples most closely resembled the grab samples; therefore, inclusion of particulate matter is important for an accurate representation of the rumen microbes. Stomach tube samples were the most variable and were most representative of the liquid phase. In comparison with a grab sample, stomach tube samples had significantly lower abundance of Lachnospiraceae, Fibrobacter and Treponema. Fecal samples did not reflect the community composition of the rumen, as fecal samples had significantly higher relative abundance of Ruminococcaceae and significantly lower relative abundance of Lachnospiraceae compared with samples from the rumen.

Management of Insect and Mite Pests of Chili using Botanical and Synthetic Chemicals

Background: The spice crop chili is cultivated all over Bangladesh but the yield is very low due to the infestation of insect and mite pests. This study investigated the efficacy of some botanical and synthetic chemicals for management of mite, whitefly and thrips attacking chili plants. Methods: The chili variety BARI Morich 2 was cultivated in Gazipur, Bangladesh and the chemicals, namely Neem oil @ 1.5 ml/L water, Omite 57 EC @ 2.0 ml/L water, Vertimec 018 EC @ 1.25 ml/L water, Liquor 1.8 EC @ 2.0 ml/L water and Confidor 20% SL @ 1.5 ml/L water were applied on the plants to manage mite, whitefly and thrips. The efficacy of the botanical and synthetic pesticides was compared to control treatment (untreated). Result: The applied chemicals significantly reduced the abundance of mite, thrips and whiteflies, resulting in the lower level of leaf curl index of plants compared to control. All the treatments revealed a significantly higher yield and benefit-cost ratio than that of control. Omite showed the lowest abundance of mite and Confidor showed the lowest leaf curl index with a lower abundance of whiteflies and thrips. Confidor treated plots gave the highest yield and benefit-cost ratio.

S18-phosphorylation of USP7 regulates interaction with TCEAL4 that defines specific complexes and potentially distinct functions.

USP7 is a nuclear deubiquitylase (DUB) with multiple cancer-associated substrates for which selective inhibitors are available, yet it remains unclear how the pleiotropic effects of USP7 are regulated. We report that S18-phosphorylation does not influence USP7 catalytic activity but instead confers selectivity for protein interactions. In particular, non-S18-phosphorylatable USP7 preferentially interacts with USP11 and TRIM27, together with TCEAL1 and TCEAL4 whose functions are unknown. Intriguingly, USP7 can interact with two cellular forms of TCEAL4, but USP11 only interacts with a lower abundance K142 mono-ubiquitylated form (TCEAL4-Ub), which can scaffold a complex containing both DUBs. Whilst USP11 and TCEAL4 are both USP7 substrates, TCEAL4-Ub levels are specifically maintained by USP11 with their levels positively correlated in cancer cell lines. Together these data illustrate how USP7 phosphorylation and TCEAL4 ubiquitylation combine to define distinct USP7 complexes. As TCEAL4 itself interacts with proteins involved in ubiquitylation and various forms of DNA regulation, these complexes may direct cellular activity of USP7.

Habitual Dietary Intake Affects the Altered Pattern of Gut Microbiome by Acarbose in Patients with Type 2 Diabetes

The aim of this research was to reveal the characteristics of gut microbiome altered by acarbose intervention in Japanese patients with type 2 diabetes (T2D) and its possible association with habitual dietary intake. Eighteen patients with T2D were administered acarbose for four weeks. The abundances of two major phyla, namely Actinobacteria and Bacteroidetes, were reciprocally changed accompanied by the acarbose intervention. There were also significant changes in the abundances of ten genera, including the greater abundance of Bifidobacterium, Eubacterium, and Lactobacillus and the lower abundance of Bacteroides in the group after the intervention than that before the intervention. Hierarchical clustering of habitual dietary intake was performed based on the pattern of changes in the gut microbiota and were classified into distinct three clusters. Cluster I consisted of sucrose, cluster II mainly included fat intake, and cluster III mainly included carbohydrate intake. Moreover, the amount of change in Faecalibacterium was positively correlated with the intake of rice, but negatively correlated with the intake of bread. The intake of potato was negatively correlated with the amount of change in Akkermansia and Subdoligranulum. Acarbose altered the composition of gut microbiome in Japanese patients with T2D, which might be linked to the habitual dietary intake.