scholarly journals Ex Vivo Method for Assessing the Mouse Reproductive Tract Spontaneous Motility and a MATLAB-based Uterus Motion Tracking Algorithm for Data Analysis

Author(s):  
Kaley L. Liang ◽  
Julia O. Bursova ◽  
Frank Lam ◽  
Xingjuan Chen ◽  
Alexander G. Obukhov
Author(s):  
Zhiwen Zhang ◽  
Jingtao Guan ◽  
Wennan Chang ◽  
Wenjuan Wang ◽  
Mingwei Sun ◽  
...  

2020 ◽  
Author(s):  
Rebecca Winter ◽  
Benson Akinola ◽  
Elizabeth Barroeta-Hlusicka ◽  
Sebastian Meister ◽  
Jens Pietzsch ◽  
...  

AbstractMaternal immune stimulation (MIS) is strongly implicated in the etiology of neuropsychiatric disorders. Magnetic resonance imaging (MRI) studies provide evidence for brain structural abnormalities in rodents following prenatal exposure to MIS. Reported volumetric changes in adult MIS offspring comprise among others larger ventricular volumes, consistent with alterations found in patients with schizophrenia. Linking rodent models of MIS with non-invasive small animal neuroimaging modalities thus represents a powerful tool for the investigation of structural endophenotypes. Traditionally manual segmentation of regions-of-interest, which is laborious and prone to low intra- and inter-rater reliability, was employed for data analysis. Recently automated analysis platforms in rodent disease models are emerging. However, none of these has been found to reliably detect ventricular volume changes in MIS nor directly compared manual and automated data analysis strategies. The present study was thus conducted to establish an automated, structural analysis method focused on lateral ventricle segmentation. It was applied to ex-vivo rat brain MRI scans. Performance was validated for phenotype induction following MIS and preventive treatment data and compared to manual segmentation. In conclusion, we present an automated analysis platform to investigate ventricular volume alterations in rodent models thereby encouraging their preclinical use in the search for new urgently needed treatments.


2012 ◽  
Author(s):  
Phaik Yong Yeoh ◽  
Syed Abdul Rahman Abu Bakar

Kertas kerja ini mengemukakan satu sistem visual untuk menjejak objek bergerak yang dapat beroperasi secara masa–nyata, efisien dan tahan lasak, dengan menggunakan turutan imej yang diperolehi daripada satu kamera statik. Algoritma menjejak yang dikemukakan menggabungkan teknik Unjuran Histogram dan kaedah Ramalan Linar untuk mencapai kelajuan menjejak yang lebih tinggi. Unjuran Histogram dilakukan untuk mendapatkan lokasi sebenar bagi objek yang dijejak, manakala kaedah Ramalan Linar disertakan dalam algoritma menjejak yang dikemukakan untuk meramal lokasi bagi objek bergerak dalam imej seterusnya, berdasarkan beberapa ukuran centroid sebelumnya. Hasil gabungan teknik Unjuran Histogram dan tertib kedua Ramalan Linar telah membolehkan algoritma yang dikemukakan untuk menjejak objek bergerak dengan tepat. Potensi and kecekapan bagi algoritma menjejak yang dikemukakan telah dibuktikan oleh keputusan menjejak yang baik pada beberapa turutan imej eksperimen. Kata kunci: menjejak pergerakan, Unjuran Histogram, Ramalan Linar, perbezaan bingkai In this paper, a real–time, efficient and robust visual tracking system for a single moving object using image sequences captured by a stationary camera is presented. The proposed tracking algorithm integrates the Projection Histograms technique with the Linear Prediction method in order to achieve a faster tracking speed. The Projection Histograms technique is applied to obtain the actual location of the tracked target, whereas the Linear Prediction method is incorporated in the proposed tracking algorithm to predict the location of the moving object in the next frame based on its several past centroid measurements. The Projection Histograms technique coupled with a second order Linear Prediction method has enabled the proposed algorithm to accurately track a single moving object. The potential applicability and efficiency of the proposed tracking algorithm has been validated by good tracking results on several experimental image sequences. Key words: Motion tracking, projection histograms, linear prediction, frame differencing


Blood ◽  
2012 ◽  
Vol 120 (21) ◽  
pp. 4125-4125
Author(s):  
Francesco Rodeghiero ◽  
Cristina Zanon ◽  
Matteo Stocchero ◽  
Elena Albiero ◽  
Silvia Castegnaro ◽  
...  

Abstract Abstract 4125 Introduction and Aims. CIK cells are CD3+/CD56+ T lymphocytes known for their antitumour effect against several haematological malignancies and solid tumours. CIK cells are obtained ex-vivo by stimulating peripheral blood mononucleated cells (MNC) with IFN-gamma (day 0), IL-2, anti-CD3 monoclonal-antibody (day 1) and IL2 every 3 days from day 1 to the 21st when maximum expansion of CD3+/CD56+ is expected as firstly described by Negrin. The percentage of CIK cells at the end of expansion represents a criteria for batch release: if CIK cells are less than 40% of the bulk population at the end of the culture, the batch should be considered suboptimal for transplantation. We have analyzed cell expansion dynamics of 30 samples evaluating the composition of cells constituting the bulk. In 11 samples (37%) CIK percentage reached plateau on day 17 instead of day 21, and then started to decrease rapidly. We believe that it is fundamental for the operator to predict in advance the harvest day in which CIK cells reach the maximal concentration in the bulk. Thus, the aim of this study was to introduce a new approach to control and optimize the expansion process based on multivariate statistical data analysis in order to improve its quality. Methods. Multivariate Batch Statistical Process Control (BSPC) and regression models based on Bidirectional-Orthogonal Projections to Latent Structures (O2PLS) were applied for monitoring the expansion process. Phenotypical analysis of cell populations was performed by flow cytometry by measuring the following different cellular subsets (11 variables): total T lymphocytes (CD3+), T-Helper lymphocytes (CD3+4+), T-cytotoxic lymphocytes (CD3+8+), CIK cells (CD3+56+), NK cells (CD3–56+), T lymphocytes (CD3+56-), monocytes (CD14+), B lymphocytes (CD19+), granulocytes (CD33+) and the undifferentiated subset CD3–56-. BSPC allowed us to produce suitable control charts while to estimate the level of CIK cells on days 17 and 21 we built different O2PLS regression models using as predictors the descriptions of the cellular population of the previous days. The chained use of the obtained regression models enabled us to predict in advance unsatisfactory expansions. Results. The expansions having a percentage of CIK cells ≥40% were used to build different types of control charts. In particular, the charts based on DModX and on T2 resulted predictive in the detection of unsatisfactory expansions. Indeed the expansions having CIK <40% on day 17 or on day 21 showed at least one time point out of the control limits for the two charts (Figure 1). Three O2PLS regression models were calculated. By considering the first three time points of expansion (day 0, day 4 and day 7), we obtained a regression model to estimate the CIK percentage on day 21 highly predictive (in Figure 2 we report the behavior of the model during cross validation). The interpretation of the model in terms of single measured variable pointed out that to estimate CIK percentage on day 21, only four out of eleven variables could be considered significant markers able to predict growth kinetic of CIK population during expansion. These variables are: the % of CIK cells on day 7, % of cytotoxic T lymphocytes on day 4 and % of NK at the beginning of the culture. Other two independent regression models were built to estimate CIK percentage on day 17 and on day 21 respectively These models used data collected until day 14 and resulted more accurate than the screening model. To validate the procedure based on the chained use of these three regression models, we tested it on three new batches. All new batches were correctly estimated as optimal or suboptimal at the end of the culture. Discussion. Multivariate statistical data analysis has been shown to be useful in generating suitable control charts and predictive models for biological experiments usually full of variables. In our study we showed that it is possible to predict the composition of the harvested population by considering the description of the cellular bulk population at the very early stages of the expansion realizing in advance if a batch will achieve acceptance criteria for release or not. The proposed approach is promising both for improving the quality of the process and for saving time and resources. Furthermore, the developed models are dynamics since they can be constantly refined by adding new data. Disclosures: No relevant conflicts of interest to declare.


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