scholarly journals Carrier-assisted One-pot Sample Preparation for Targeted Proteomics Analysis of Small Numbers of Human Cells

Author(s):  
Kendall Martin ◽  
Tong Zhang ◽  
Pengfei Zhang ◽  
William B. Chrisler ◽  
Fillmore L. Thomas ◽  
...  

protocols.io ◽  
2021 ◽  
Author(s):  
Kendall not provided Martin ◽  
Tong not provided Zhang ◽  
William not provided B. Chrisler ◽  
Fillmore not provided L. Thomas ◽  
Wei-Jun not provided Qian ◽  
...  


Bioanalysis ◽  
2021 ◽  
Author(s):  
Zhenbin Zhang ◽  
Minyang Zheng ◽  
Yufen Zhao ◽  
Perry G Wang

Sample preparation and separation methods determine the sensitivity and the quantification accuracy of the proteomics analysis. This article covers a comprehensive review of the recent technique development of high-throughput and high-sensitivity sample preparation and separation methods in proteomics research.



2008 ◽  
pp. 31-69 ◽  
Author(s):  
Natalia Govorukhina ◽  
Rainer Bischoff


Author(s):  
György Marko-Varga ◽  
Thomas Laurell ◽  
Simon Ekström ◽  
Johan Nilsson


BioTechniques ◽  
2021 ◽  
Author(s):  
David Kotol ◽  
Andreas Hober ◽  
Linnéa Strandberg ◽  
Anne-Sophie Svensson ◽  
Mathias Uhlén ◽  
...  

Targeted proteomics is an attractive approach for the analysis of blood proteins. Here, we describe a novel analytical platform based on isotope-labeled recombinant protein standards stored in a chaotropic agent and subsequently dried down to allow storage at ambient temperature. This enables a straightforward protocol suitable for robotic workstations. Plasma samples to be analyzed are simply added to the dried pellet followed by enzymatic treatment and mass spectrometry analysis. Here, we show that this approach can be used to precisely (coefficient of variation <10%) determine the absolute concentrations in human plasma of hundred clinically relevant protein targets, spanning four orders of magnitude, using simultaneous analysis of 292 peptides. The use of this next-generation analytical platform for high-throughput clinical proteome profiling is discussed.



2017 ◽  
Vol 183 (3) ◽  
pp. 923-930 ◽  
Author(s):  
Song Li ◽  
Xupeng Cao ◽  
Yan Wang ◽  
Zhen Zhu ◽  
Haowei Zhang ◽  
...  


Author(s):  
Katharina Habler ◽  
Bernhard Koeppl ◽  
Franz Bracher ◽  
Michael Vogeser

Abstract Objectives Bile acids serve as biomarkers for liver function and are indicators for cholestatic and hepatobiliary diseases like hepatitis, cirrhosis, and intrahepatic cholestasis of pregnancy (ICP). Sulfation and renal excretion of bile acids are important elimination steps. The power of ultra high performance liquid chromatography-tandem mass spectrometry (UHPLC-MS/MS) allows specific profiling of primary and secondary bile acids as well as their sulfated counterparts. Methods Twenty-four sulfated and non-sulfated primary and secondary bile acids were quantified in urine with 15 corresponding stable isotope labeled internal standards by using two-dimensional UHPLC-MS/MS. The sample preparation was based on a simple dilution with a methanolic zinc sulfate solution followed by an automated online solid phase extraction clean up. Results The validation results of the method fulfilled the criteria of the European Medicine Agency (EMA) “Guideline on bioanalytical method validation”. To verify fitness for purpose, 40 urine samples were analyzed which showed an average of 86% sulfation, 9.1% taurine-conjugation, 14% non-conjugation, and 77% glycine-conjugation rates. Conclusions Lossless one-pot sample preparation, automated sample purification, and high number of internal standards are major innovations of the presented profiling method, which may allow diagnostic application of BA profiling in the future.



BioTechniques ◽  
2020 ◽  
Vol 69 (2) ◽  
pp. 148-151
Author(s):  
Alexandre Zougman ◽  
John P Wilson ◽  
Rosamonde E Banks

Serum is the body fluid most often used in biomarker discovery. Albumin, the most abundant serum protein, contributes approximately 50% of the serum protein content, with an additional dozen abundant proteins dominating the rest of the serum proteome. To profile this challenging protein mixture by proteomics, the abundant proteins must be depleted to allow for detection of the low-abundant proteins, the primary biomarker targets. Current serum depletion approaches for proteomics are costly and relatively complex to couple with protein digestion. We demonstrate a simple, affordable serum depletion methodology that, within a few minutes of processing, results in two captured serum fractions – albumin-depleted and albumin-rich – which are digested in situ. We believe our method is a useful addition to the biomarker sample preparation toolbox.



PROTEOMICS ◽  
2019 ◽  
Vol 19 (9) ◽  
pp. 1900027 ◽  
Author(s):  
Miguel A. Gonzalez‐Lozano ◽  
Frank Koopmans ◽  
Iryna Paliukhovich ◽  
August B. Smit ◽  
Ka Wan Li


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