scholarly journals Behavioral and chemical antipredator mechanisms in ground beetles: an attempt to reconcile within a phylogenetic frame

2019 ◽  
Vol 2 ◽  
Author(s):  
Pietro Brandmayr ◽  
Teresa Bonacci
Keyword(s):  
Sound Production ◽  
Current Knowledge ◽  
Phylogenetic Analyses ◽  
Ground Beetles ◽  
Species Group ◽  
Pygidial Gland ◽  
Behavioral Strategies ◽  
Antipredator Mechanisms ◽  
Communal Roosting ◽  
High Level

Like other coleopterans, Carabids are recognized for the use of passive and active strategies against their enemies. They are known to produce dangerous and distasteful chemicals and to use anti-predator behaviors such crypsis/mimicry, gregariousness, intra- and interspecific helpful interactions, sound production and aposematism. While defensive chemicals have been an important element in the successful diversification of ground beetles, in many tribes of this wide adephagan family many other systems have evolved and discovered. Here we present a review on the current knowledge of the avoidance mechanisms in carabids, with a discussion of data on chemical products, morphological adaptations and behaviors used against vertebrate and invertebrate predators. The most widespread strategy is discouragement of the predators using pygidial gland secretions, but passive anti-predator strategies are also displayed as group-protecting behavior through intraspecific aggregations or communal roosting. Most adult carabids tend to be dark in color and thus less detectable, but chemically well-protected taxa use the opposite strategy, displaying bright colors related to mimicry or aposematism. In aposematic species, group-protecting behavior has probably evolved from intraspecific gregariousness into multispecies aggregations. Larval behavioral strategies are related more closely to the epigean or underground lifestyle. In surface-living larvae, cannibalism avoidance and the usage of defensive substances have been reported for Chlaeniini. In this tribe we found an interesting coincidence between a high level of toxicity/distastefulness and a complex larval behavior. Based mainly on the genus-level supertree of Beutel et al. (2008) and the phylogenetic analyses of Ober & Maddison (2008) we reconstructed the evolutionary relationships among the chemical classes isolated inside the tribes. The scenario shows that several semiochemical classes (quinone/benzoquinones, formic acid, m-cresol, methacrylic acid, isovaleric acid, ß-necrodol, benzaldehyde, etc.) found in carabids are at least in part related to their life style and habitat selection. The proposed relationship still lacks other chemical data of the missing genera/species and even if the knowledge of carabid anti-predator strategies still seems to be in the pioneer stage, future studies on carabid anti-predator behavior look very promising.

Taxonomy and phylogeny of the genus Steinera (Arctomiales, Arctomiaceae) in the subantarctic islands of Crozet and Kerguelen

Phytotaxa ◽  
2017 ◽  
Vol 324 (3) ◽  
pp. 201 ◽  
Author(s):  
DAMIEN ERTZ ◽  
ROAR S. POULSEN ◽  
MARYVONNE CHARRIER ◽  
ULRIK SØCHTING
Keyword(s):  
Convergent Evolution ◽  
Type Species ◽  
New Genus ◽  
Phylogenetic Analyses ◽  
Species Group ◽  
Phylogenetic Position ◽  
The Past ◽  
Subantarctic Islands ◽  
Species Groups ◽  
High Level

The lichenized genus Steinera is revised for the archipelagos of Crozet and of Kerguelen, with a high level of endemism revealed. It is shown to represent a good example of convergent evolution between two different orders. Phylogenetic analyses using nuLSU, RPB1 and mtSSU sequences show that two different species groups can be recognized: Steinera s. str. belongs to the Arctomiaceae (Arctomiales) and is characterized notably by species having pluriseptate ascospores, and a second species group belongs to the Koerberiaceae (Peltigerales) and is characterized notably by simple ascospores sometimes having a plasma-bridge. The genus Henssenia is newly described to accommodate this latter group. The type species of Steinera is shown to have been erroneously treated in the past, with Steinera molybdoplaca being the type of Steinera and “S.” glaucella belonging to the genus Henssenia. A sorediate morph is recorded for S. molybdoplaca and the results confirmed using a 4-gene phylogeny, including nuITS sequences. Some species previously described in the genera Arctomia and Massalongia from the Southern Hemisphere are shown to belong to Steinera s. str. Five new species are described: Steinera isidiata Ertz & R.S. Poulsen, S. membranacea Ertz & R.S. Poulsen, S. lebouvieri Ertz, S. pannarioides Ertz & R.S. Poulsen and Henssenia subglaucella Ertz & R.S. Poulsen along with seven new combinations: Steinera intricata (Øvstedal) Ertz, S. latispora (Øvstedal) Ertz, S. olechiana (Alstrup & Søchting) Ertz & Søchting, S. subantarctica (Øvstedal) Ertz, Henssenia glaucella (Tuck.) Ertz, R.S. Poulsen & Søchting, H. radiata (P. James & Henssen) Ertz and H. werthii (Zahlbr.) Ertz, R.S. Poulsen & Søchting. An epitype is chosen for Henssenia glaucella and a neotype for H. werthii. “Steinera” symptychia has an isolated phylogenetic position in the Koerberiaceae and might represent a distinct, new genus. World-wide identification keys to the species of Henssenia and Steinera are provided.

scholarly journals Loose Ends in the Cortinarius Phylogeny: Five New Myxotelamonoid Species Indicate a High Diversity of These Ectomycorrhizal Fungi with South American Nothofagaceae

Life ◽  
2021 ◽  
Vol 11 (5) ◽  
pp. 420
Author(s):  
María Eugenia Salgado Salomón ◽  
Carolina Barroetaveña ◽  
Tuula Niskanen ◽  
Kare Liimatainen ◽  
Matthew E. Smith ◽  
...  
Keyword(s):  
New Species ◽  
Current Knowledge ◽  
Phylogenetic Analyses ◽  
Molecular Data ◽  
Global Scale ◽  
South American ◽  
Edible Fungi ◽  
Rdna Its ◽  
Morphological And Molecular Data ◽  
High Diversity

This paper is a contribution to the current knowledge of taxonomy, ecology and distribution of South American Cortinarius (Pers.) Gray. Cortinarius is among the most widely distributed and species-rich basidiomycete genera occurring with South American Nothofagaceae and species are found in many distinct habitats, including shrublands and forests. Due to their ectomycorrhizal role, Cortinarius species are critical for nutrient cycling in forests, especially at higher latitudes. Some species have also been reported as edible fungi with high nutritional quality. Our aim is to unravel the taxonomy of selected Cortinarius belonging to phlegmacioid and myxotelamonioid species based on morphological and molecular data. After widely sampling Cortinarius specimens in Patagonian Nothofagaceae forests and comparing them to reference collections (including holotypes), we propose five new species of Cortinarius in this work. Phylogenetic analyses of concatenated rDNA ITS-LSU and RPB1 sequences failed to place these new species into known Cortinarius sections or lineages. These findings highlight our knowledge gaps regarding the fungal diversity of South American Nothofagaceae forests. Due to the high diversity of endemic Patagonian taxa, it is clear that the South American Cortinarius diversity needs to be discovered and described in order to understand the evolutionary history of Cortinarius on a global scale.

Impact of genotypic diversity on selection of subtype-specific drug resistance profiles during raltegravir-based therapy in individuals infected with B and BF recombinant HIV-1 strains

2020 ◽  
Vol 75 (6) ◽  
pp. 1567-1574
Author(s):  
Daniela Sánchez ◽  
Solange Arazi Caillaud ◽  
Ines Zapiola ◽  
Silvina Fernandez Giuliano ◽  
Rosa Bologna ◽  
...  
Keyword(s):  
Drug Resistance ◽  
Current Knowledge ◽  
Phylogenetic Analyses ◽  
Genotypic Diversity ◽  
Resistance Testing ◽  
Cross Resistance ◽  
Resistance Mutations ◽  
Middle Income ◽  
Subtype B ◽  
Hiv 1

Abstract Background Current knowledge on HIV-1 resistance to integrase inhibitors (INIs) is based mostly on subtype B strains. This contrasts with the increasing use of INIs in low- and middle-income countries, where non-B subtypes predominate. Materials and methods HIV-1 drug resistance genotyping was performed in 30 HIV-1-infected individuals undergoing virological failure to raltegravir. Drug resistance mutations (DRMs) and HIV-1 subtype were characterized using Stanford HIVdb and phylogenetic analyses. Results Of the 30 integrase (IN) sequences, 14 were characterized as subtype F (47%), 8 as subtype B (27%), 7 as BF recombinants (23%) and 1 as a putative CRF05_DF (3%). In 25 cases (83%), protease and reverse transcriptase (PR-RT) sequences from the same individuals confirmed the presence of different BF recombinants. Stanford HIVdb genotyping was concordant with phylogenetic inference in 70% of IN and 60% of PR-RT sequences. INI DRMs differed between B and F IN subtypes, with Q148K/R/H, G140S and E138K/A being more prevalent in subtype B (63% versus 0%, P = 0.0021; 50% versus 0%, P = 0.0096; and 50% versus 0%, P = 0.0096, respectively). These differences were independent of the time on raltegravir therapy or viral load at the time of genotyping. INI DRMs in subtype F IN genomes predicted a lower level of resistance to raltegravir and no cross-resistance to second-generation INIs. Conclusions Alternative resistance pathways to raltegravir develop in subtypes B and F IN genomes, with implications for clinical practice. Evaluating the role of HIV-1 subtype in development and persistence of mutations that confer resistance to INIs will be important to improve algorithms for resistance testing and optimize the use of INIs.

scholarly journals High-Intensity Focused Ultrasound Circular Cyclocoagulation in Glaucoma: A Step Forward for Cyclodestruction?

2017 ◽  
Vol 2017 ◽  
pp. 1-14 ◽  
Author(s):  
Rodolfo Mastropasqua ◽  
Vincenzo Fasanella ◽  
Alessandra Mastropasqua ◽  
Marco Ciancaglini ◽  
Luca Agnifili
Keyword(s):  
High Intensity ◽  
Ciliary Body ◽  
Focused Ultrasound ◽  
Current Knowledge ◽  
High Intensity Focused Ultrasound ◽  
High Rate ◽  
Dose Effect ◽  
Computer Assisted ◽  
Refractory Glaucoma ◽  
High Level

The ciliary body ablation is still considered as a last resort treatment to reduce the intraocular pressure (IOP) in uncontrolled glaucoma. Several ablation techniques have been proposed over the years, all presenting a high rate of complications, nonselectivity for the target organ, and unpredictable dose-effect relationship. These drawbacks limited the application of cyclodestructive procedures almost exclusively to refractory glaucoma. High-intensity focused ultrasound (HIFU), proposed in the early 1980s and later abandoned because of the complexity and side effects of the procedure, was recently reconsidered in a new approach to destroy the ciliary body. Ultrasound circular cyclocoagulation (UC3), by using miniaturized transducers embedded in a dedicated circular-shaped device, permits to selectively treat the ciliary body in a one-step, computer-assisted, and non-operator-dependent procedure. UC3 shows a high level of safety along with a predictable and sustained IOP reduction in patients with refractory glaucoma. Because of this, the indication of UC3 was recently extended also to naïve-to-surgery patients, thus reconsidering the role and timing of ciliary body ablation in the surgical management of glaucoma. This article provides a review of the most used cycloablative techniques with particular attention to UC3, summarizing the current knowledge about this procedure and future possible developments.

Consensus document on radiotherapy in patients with implantable pacemakers and cardioverter – defibrilators

2018 ◽  
Vol 2 (47) ◽  
pp. 27-31
Author(s):  
Lidia Chmielewska-Michalak ◽  
Ewelina Konstanty ◽  
Przemysław Mitkowski
Keyword(s):  
Current Knowledge ◽  
Clinical Status ◽  
Electronic Devices ◽  
Heart Rhythm ◽  
Complex Care ◽  
Consensus Document ◽  
Cardiac Implantable Electronic Devices ◽  
Number Of Patients ◽  
High Level ◽  
Emergency Mode

The number of patients with cardiac implantable electronic devices (CIED), who require oncological management including radiotherapy (RT) is still increasing. According to current knowledge the most frequent device dysfunction related to exposition to ionizing radiation is reprogramming to emergency mode (soft reset). There are uncommon cases of complete, irreversible device damage. CIED dysfunction during RT can be observed in approximately 3% of patients. In majority of cases they are asymptomatic, although in literature there are descriptions of deterioration of clinical status due to bradycardia or exacerbation of heart failure. The most important factor of device malfunction is radiotherapy with photons of energy >10 MV or protons despite energy used. So far there were no cases published with inadequate ICD therapies due to the presence of electromagnetic field interference during RT. Because patients with CIED undergoing RT need complex care to achieve high level of safety, experts of Heart Rhythm Society establish document, published in 2017 which summarized current knowledge about this group of patients. The document contains guidelines on peri-radiotherapy care of patients with CIED.

scholarly journals A re-examination of the molecular systematics and phylogeography of taxa of the Peromyscus aztecus species group, with comments on the distribution of P. winkelmanni

Therya ◽  
2021 ◽  
Vol 12 (2) ◽  
pp. 331-346
Author(s):  
C. William Kilpatrick ◽  
Nelish Pradhan ◽  
Ryan W Norris
Keyword(s):  
Phylogenetic Analyses ◽  
Distinct Species ◽  
Molecular Study ◽  
Molecular Data ◽  
Species Group ◽  
Cytb Sequence ◽  
Voucher Specimen ◽  
Cranial Measurements ◽  
Mitochondrial Cytochrome B ◽  
Isthmus Of Tehuantepec

The objectives of this study are to examine the available molecular data from the mitochondrial cytochrome-b gene (Cytb) and a concatenated dataset with this gene and two nuclear introns (Adh-1-I2 and Fgb-I7) to reexamine the systematic and phylogeographic conclusions reached by Sullivan et al. (1997) concerning the Peromyscus aztecus species group. The divergence of samples of P. aztecus oaxacensis across the Isthmus of Tehuantepec are further examined and taxonomic revisions are suggested. In addition, this study reviews the sources of data that lead to the conclusion that P. winkelmanni occurred in the Sierra Madre del Sur in Guerrero including a morphometric examination of a reported voucher. Bayesian and maximum likelihood analyses were conducted on a dataset of 31 Cytb sequences of all taxa in the P. aztecus group except for P. a. cordillerae and a concatenated dataset including five individuals of this group. Representative taxa of the P. boylii, P. mexicanus, and P. truei groups were included in both analyses. Body and cranial measurements of the voucher of the P. winkelmanni from Guerrero from which a Cytb sequence is reported to have been obtained was compared with measurements from specimens taken from the vicinity of Dos Aguas, Michoacán, including the type locality. We identified seven instances involving problematic identifications in GenBank. Once these issues were addressed, well-supported monophyletic sister clades of the P. aztecus and P. boylii species groups were recovered from phylogenetic analyses of Cytb sequences (Fig 1). Phylogenetic analyses of the Cytb and the concatenated datasets recover similar topologies that support the relationships of taxa of the aztecus group proposed by an earlier molecular study. Populations of P. a. oaxacensis southeast of the Isthmus of Tehuantepec represent a distinct species. Measurements of the voucher from Guerrero identified as the source of a P. winkelmanni Cytb sequence are smaller than P. winkelmanni for several characters. The divergent populations of P. a. oaxacensis from southeast of the Isthmus of Tehuantepec are recognized as two subspecies of P. cordillerae, P. c. cordillerae and P. c. hondurensis, whereas those northwest of the Isthmus are retained as P. a. oaxacensis. The lack of genetic divergence observed between P. a. evides and P. a. oaxacensis questions whether these two taxa should continue to be recognized as separate subspecies. Northern and southern populations of P. spicilegus demonstrate moderate divergence and additional examination of morphological and molecular differentiation within this taxon is warranted. The distribution of P. winkelmanni should be restricted to the vicinity of Dos Aguas, Michoacán, due to the lack of a voucher specimen that would confirm its reported occurrence in Guerrero.

The Vietnamese population of Megophrys kuatunensis (Amphibia: Megophryidae) represents a new species of Asian horned frog from Vietnam and southern China

Zootaxa ◽  
2017 ◽  
Vol 4344 (3) ◽  
pp. 465 ◽  
Author(s):  
BENJAMIN TAPLEY ◽  
TIMOTHY CUTAJAR ◽  
STEPHEN MAHONY ◽  
CHUNG THANH NGUYEN ◽  
VINH QUANG DAU ◽  
...  
Keyword(s):  
New Species ◽  
Southern China ◽  
Phylogenetic Analyses ◽  
Eastern China ◽  
Taxonomic Status ◽  
Species Group ◽  
Type Specimens ◽  
Vietnamese Population ◽  
Group A ◽  
A New Species

The Asian frog genus Megophrys is a diverse group of morphologically conserved, forest-dwelling frogs. The genus harbours highly localised species diversification and new species continue to be described on a regular basis. We examined the taxonomic status of a population of Megophrys frogs from the Hoang Lien Range in northern Vietnam and southern China previously identified as M. kuatunensis (subgenus Panophrys). Preliminary phylogenetic analyses using a fragment of 16S rDNA places the species in question within the Megophrys (subgenus Panophrys) species group, a primarily Chinese radiation within the genus. On the basis of morphological, molecular and bioacoustic data, we conclude that this population does not represent M. kuatunensis, or any known species in the genus. We herein describe this species of Megophrys as new. Known only from Sa Pa District, Lao Cai Province in Vietnam and Jinping County, Yunnan Province in China, the new species is likely to be threatened by ongoing deforestation in the region. We provide an updated species description of M. kuatunensis based on type specimens, and suggest that M. kuatunensis is likely to be restricted to eastern China.  

Oogonial biometry and phylogenetic analyses of the Pythium vexans species group from woody agricultural hosts in South Africa reveal distinct groups within this taxon

2011 ◽  
Vol 115 (2) ◽  
pp. 157-168 ◽  
Author(s):  
Christoffel F.J. Spies ◽  
Mark Mazzola ◽  
Wilhelm J. Botha ◽  
Marieta Van Der Rijst ◽  
Lizel Mostert ◽  
...  
Keyword(s):  
South Africa ◽  
Phylogenetic Analyses ◽  
Species Group ◽  
Pythium Vexans

The Akodon boliviensis species group (Rodentia: Cricetidae: Sigmodontinae) in Argentina: species limits and distribution, with the description of a new entity

Zootaxa ◽  
2010 ◽  
Vol 2409 (1) ◽  
pp. 1 ◽  
Author(s):  
J. PABLO JAYAT ◽  
PABLO E. ORTIZ ◽  
JORGE SALAZAR-BRAVO ◽  
ULYSES F. J. PARDIÑAS ◽  
GUILLERMO D’ELÍA
Keyword(s):  
Phylogenetic Analyses ◽  
Molecular Data ◽  
Species Group ◽  
Species Limits ◽  
Northwestern Argentina ◽  
Semiarid Environments ◽  
Central Argentina ◽  
The Andes ◽  
Mountain System ◽  
Living Species

Akodon, with about 42 living species, is the most diverse genus of the subfamily Sigmodontinae. The Akodon boliviensis species group includes small-bodied, morphologically similar forms inhabiting Altiplano grasslands and grassland/forest ecotones of the eastern slope of the Andes, from central Peru to central Argentina. Northwestern Argentina contains the largest diversity of species of the group; the taxonomic treatment of these species has been based largely on unsupported and some weakly based opinions as underscored by recurrent changes. Based on morphologic and molecular data we assessed species limits among Argentinean populations of the Akodon boliviensis species group. We conclude that four species of the A. boliviensis species group inhabit northwestern Argentina. These are: A. boliviensis; A. caenosus (under which we synonymyze A. aliquantulus); A. spegazzinii (of which the nominal forms alterus, leucolimnaeus, and tucumanensis are junior synonyms); and A. sylvanus. Additionally, we described here a new species of the A. boliviensis species group, Akodon polopi, which inhabits central Argentina. This is the only species of the A. boliviensis species group inhabiting the Sierras Grandes range (ca. 2000 m), mountain system of medium height, isolated (ca., 600 km) from the main Andean chain by low elevation arid and semiarid environments. Additionally, our phylogenetic analyses suggests that the Akodon varius species group is polyphyletic.

A new species of black fly (Diptera: Simuliidae) in the Simulium (Simulium) multistriatum species-group from Thailand

Zootaxa ◽  
2019 ◽  
Vol 4586 (3) ◽  
pp. 461 ◽  
Author(s):  
JIRAPORN THAIJARERN ◽  
KOMGRIT WONGPAKAM ◽  
ANONGRIT KANGRANG ◽  
PAIROT PRAMUAL
Keyword(s):  
New Species ◽  
Genetic Distance ◽  
Dna Sequences ◽  
Phylogenetic Analyses ◽  
Strong Support ◽  
Pupal Stage ◽  
Species Group ◽  
Mountainous Area ◽  
Black Fly ◽  
Interspecific Genetic Distance

A new black fly species of the Simulium multistriatum species-group of the subgenus Simulium Latreille is described from the mountainous area in northeastern Thailand, based on morphology and mitochondrial DNA sequences. The new species is morphologically similar to S. laui Takaoka and Sofian-Azirun and S. lacduongense Takaoka and Ya’cob originally described from Vietnam, S. fenestratum Edwards originally described from Indonesia and S. chaliowae Takaoka and Boonkemtong originally described from Thailand, but can be distinguished in the adult stage by the number of upper eye facets and globular shape of the spermatheca and in the pupal stage by the cocoon and shape of thoracic tubercles. Genetic distance and phylogenetic analyses of mitochondrial cytochrome c oxidase I sequences differentiated the new species from other members of S. multistriatum species-group. All specimens of the new species formed a monophyletic clade with strong support in all phylogenetic analyses. The minimum interspecific genetic distance of 4.9% is considerably greater than the new species maximum intraspecific genetic distance (2.7%). 

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