scholarly journals Sharing taxonomic expertise between natural history collections using image recognition

Author(s):  
Michael Greeff ◽  
Max Caspers ◽  
Vincent Kalkman ◽  
Luc Willemse ◽  
Barry Sunderland ◽  
...  

Natural history collections play a vital role in biodiversity research and conservation by providing a window to the past. The usefulness of the vast amount of historical data depends on their quality, with correct taxonomic identifications being the most critical. The identification of many of the objects of natural history collections, however, is wanting, doubtful or outdated. Providing correct identifications is difficult given the sheer number of objects and the scarcity of expertise. Here we outline the construction of an ecosystem for the collaborative development and exchange of image recognition algorithms designed to support the identification of objects. Such an ecosystem will facilitate sharing taxonomic expertise among institutions by offering image datasets that are correctly identified by their in-house taxonomic experts. Together with openly accessible machine learning algorithms and easy to use workbenches, this will allow other institutes to train image recognition algorithms and thereby compensate for the lacking expertise.

Author(s):  
Emily W. B. Russell Southgate

This chapter introduces the use of historical documents and other forms of information that depend on written explanation, such as natural history collections and historical photographs. After a general explanation of the unique values of these data for establishing historical baselines and trajectories, it gives a brief introduction to the methods used to assess the validity of the sources, including consideration of various biases that are integral to written documents. These include a consideration of scale. The chapter then describes a variety of sources, including historical data, maps, photographs, government documents, and plant and animal collections, with examples of how each has been used to establish some condition or process in the past.


2018 ◽  
Vol 374 (1763) ◽  
pp. 20170405 ◽  
Author(s):  
Heather M. Kharouba ◽  
Jayme M. M. Lewthwaite ◽  
Rob Guralnick ◽  
Jeremy T. Kerr ◽  
Mark Vellend

Over the past two decades, natural history collections (NHCs) have played an increasingly prominent role in global change research, but they have still greater potential, especially for the most diverse group of animals on Earth: insects. Here, we review the role of NHCs in advancing our understanding of the ecological and evolutionary responses of insects to recent global changes. Insect NHCs have helped document changes in insects' geographical distributions, phenology, phenotypic and genotypic traits over time periods up to a century. Recent work demonstrates the enormous potential of NHCs data for examining insect responses at multiple temporal, spatial and phylogenetic scales. Moving forward, insect NHCs offer unique opportunities to examine the morphological, chemical and genomic information in each specimen, thus advancing our understanding of the processes underlying species’ ecological and evolutionary responses to rapid, widespread global changes. This article is part of the theme issue ‘Biological collections for understanding biodiversity in the anthropocene’.


2018 ◽  
Vol 2 ◽  
pp. e25806
Author(s):  
Annmarie Fearing ◽  
Kelcee Smith ◽  
Tonya Wiley ◽  
Jeff Whitty ◽  
Kevin Feldheim ◽  
...  

The Critically Endangered (International Union for Conservation of Nature) largetooth sawfish, Pristispristis, was historically distributed in the tropical Pacific, Atlantic and Indian Oceans. Today, ‘viable’ populations are largely limited to northern Australia. Populations that have suffered from drastic declines in abundance, such as those experienced by P.pristis, are typically at risk of having reduced, or low, levels of genetic diversity. Previous research found that P.pristis in Australia have experienced a genetic bottleneck, but it is unclear whether this bottleneck is the result of contemporary declines over the last century, or if it is the result of historic processes. A direct way to assess whether this genetic bottleneck occurred relatively recently is to compare levels of genetic diversity in contemporary and historic populations. Sawfish saws that were taken as trophies over the past century can now be found in natural history collections around the world and can provide DNA from past sawfish populations. We collected tissue samples from 150 dried P.pristis saws found in both private and public natural history collections. Because DNA from natural history specimens tends to be highly degraded, we targeted ten small DNA fragments, ~150 base pairs each, to amplify and sequence the entire mitochondrial control region. These data will provide important baseline information about P.pristis that can be used to quantify any loss of genetic diversity over the past ~100 years and assess their long-term survival potential. If the levels of genetic diversity in contemporary populations are severely reduced from those of past populations, protecting remaining genetic diversity within and between viable populations should be a priority in conservation plans.


PeerJ ◽  
2019 ◽  
Vol 7 ◽  
pp. e8086 ◽  
Author(s):  
Neil S. Cobb ◽  
Lawrence F. Gall ◽  
Jennifer M. Zaspel ◽  
Nicolas J. Dowdy ◽  
Lindsie M. McCabe ◽  
...  

Over 300 million arthropod specimens are housed in North American natural history collections. These collections represent a “vast hidden treasure trove” of biodiversity −95% of the specimen label data have yet to be transcribed for research, and less than 2% of the specimens have been imaged. Specimen labels contain crucial information to determine species distributions over time and are essential for understanding patterns of ecology and evolution, which will help assess the growing biodiversity crisis driven by global change impacts. Specimen images offer indispensable insight and data for analyses of traits, and ecological and phylogenetic patterns of biodiversity. Here, we review North American arthropod collections using two key metrics, specimen holdings and digitization efforts, to assess the potential for collections to provide needed biodiversity data. We include data from 223 arthropod collections in North America, with an emphasis on the United States. Our specific findings are as follows: (1) The majority of North American natural history collections (88%) and specimens (89%) are located in the United States. Canada has comparable holdings to the United States relative to its estimated biodiversity. Mexico has made the furthest progress in terms of digitization, but its specimen holdings should be increased to reflect the estimated higher Mexican arthropod diversity. The proportion of North American collections that has been digitized, and the number of digital records available per species, are both much lower for arthropods when compared to chordates and plants. (2) The National Science Foundation’s decade-long ADBC program (Advancing Digitization of Biological Collections) has been transformational in promoting arthropod digitization. However, even if this program became permanent, at current rates, by the year 2050 only 38% of the existing arthropod specimens would be digitized, and less than 1% would have associated digital images. (3) The number of specimens in collections has increased by approximately 1% per year over the past 30 years. We propose that this rate of increase is insufficient to provide enough data to address biodiversity research needs, and that arthropod collections should aim to triple their rate of new specimen acquisition. (4) The collections we surveyed in the United States vary broadly in a number of indicators. Collectively, there is depth and breadth, with smaller collections providing regional depth and larger collections providing greater global coverage. (5) Increased coordination across museums is needed for digitization efforts to target taxa for research and conservation goals and address long-term data needs. Two key recommendations emerge: collections should significantly increase both their specimen holdings and their digitization efforts to empower continental and global biodiversity data pipelines, and stimulate downstream research.


2000 ◽  
Vol 10 ◽  
pp. 43-50
Author(s):  
Warren D. Allmon ◽  
Meredith A. Lane

WITHIN BIOLOGY, the consummate synthetic, big-picture science is systematics and the fundamental resource and tool for systematics is natural history collections. Without systematics there is no unifying theme to the study of biology. Without natural history collections there is no systematics. Society and the institutions that house natural history collections must rediscover the value of those collections. These collections are a world treasure, a cultural heritage, an intellectual trust, a societal and institutional responsibility.Paleontology and paleontological collections contribute uniquely to the sciences of systematics and ecology. They provide the record of change through geological time evidence of the changes in the characteristics of species, changes in ecological associations of biota, and a record of abiotic global and regional climatic change. The study of this historical record allows the identification of the locations of certain sets of conditions from the past, illuminates our understanding of the present, and enables our prediction of future changes on a global scale.


Now a day's Data is playing a central role and is carrying the big asset in the insurance industry. In today's journey insurance industry has a vital role. Insurance transporters have access to more information than ever before. From the past 700+ years in the insurance industry we can consider the three major eras Starting from 15th century to 1960, industry followed the manual era, from1960s to 2000 we are in the systems era, now we are in digital era i.e. 2001-20X0.The highest corporate object in all three eras is that the fundamental insurance industry has been determined by believing the data analytics in adopting the changing technologies to better and keep the ways and keep capital together. In advanced analysis the main challenge is the analytical models and algorithms which are being insufficient to support insurers; only by machines we can overcome this challenge


Author(s):  
E.L. Benedetti ◽  
I. Dunia ◽  
Do Ngoc Lien ◽  
O. Vallon ◽  
D. Louvard ◽  
...  

In the eye lens emerging molecular and structural patterns apparently cohabit with the remnants of the past. The lens in a rather puzzling fashion sums up its own natural history and even transient steps of the differentiation are memorized. A prototype of this situation is well outlined by the study of the lenticular intercellular junctions. These membrane domains exhibit structural, biochemical and perhaps functional polymorphism reflecting throughout life the multiple steps of the differentiation of the epithelium into fibers and of the ageing process of the lenticular cells.The most striking biochemical difference between the membrane derived from the epithelium and from the fibers respectively, concerns the presence of the 26,000 molecular weight polypeptide (MP26) in the latter membranes.


2015 ◽  
Vol 42 (2) ◽  
pp. 197-210 ◽  
Author(s):  
Laurence M. Cook

Joseph Sidebotham (1824–1885) was a Manchester cotton baron whose natural history collections are now in the Manchester Museum. In addition to collecting he suggested a method for identifying and classifying Lepidoptera and investigated variation within species as well as species limits. With three close collaborators, he is credited with discovering many species new to Britain in both Lepidoptera and Coleoptera. A suspicion of fraud attaches to these claims. The evidence is not clear-cut in the Lepidoptera, but a possible reason is suggested why Sidebotham, as an amateur in the increasingly professional scientific world, might have engaged in deceit.


1981 ◽  
Vol 1981 (1) ◽  
pp. 61-70
Author(s):  
H. B. Carter ◽  
Judith A. Diment ◽  
C. J. Humphries ◽  
Alwyne Wheeler

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