scholarly journals Systematic assessment of the Panopeidae and broader Eubrachyura (Decapoda: Brachyura) using mitochondrial genomics

2021 ◽  
Vol 79 ◽  
pp. 569-585
Author(s):  
Lucas A. Jennings ◽  
April M. H. Blakeslee ◽  
Krista A. McCoy ◽  
Donald C. Behringer ◽  
Jamie Bojko
Keyword(s):  
Phylogenetic Analysis ◽  
Taxonomic Revision ◽  
Sister Group ◽  
Gene Arrangement ◽  
Mitochondrial Genomes ◽  
Mud Crab ◽  
Systematic Assessment ◽  
The Family ◽  
Eurypanopeus Depressus ◽  
Conserved Gene

Abstract This study provides a broad phylogenetic analysis for the Eubrachyura, with the inclusion of three new Panopeidae mitochondrial genomes: Eurypanopeus depressus (flatback mud crab) (15,854bp), Panopeus herbstii (Atlantic mud crab) (15,812bp) and Rhithropanopeus harrisii (Harris, or ‘white-fingered’ mud crab) (15,892bp). These new mitogenomes were analyzed alongside all available brachyuran mitochondrial genomes (n = 113), comprising 80 genera from 29 families, to provide an updated phylogenetic analysis of the infra-order Brachyura (“true crabs”). Our analyses support the subsection Potamoida within the Eubrachyura as the sister group to Thoracotremata. The family Panopeidae aligns with the family Xanthidae to form the Xanthoidea branch, which is supported by current morphological and genetic taxonomy. A unique gene arrangement termed ‘XanGO’ was identified for the panopeids and varies relative to other members of the subsection Heterotremata (within the Eubrachyura) via a transposition of the trnV gene. This gene arrangement is novel and is shared between several Xanthoidea species, including Etisus anaglyptus (hairy spooner crab), Atergatis floridus (brown egg crab), and Atergatis integerrimus (red egg crab), suggesting that it is a conserved gene arrangement within the Xanthoidea superfamily. Our study further reveals a need for taxonomic revision of some brachyuran groups, particularly the Sesarmidae. The inclusion of panopeid mitogenomes into the greater brachyuran phylogeny increases our understanding of crab evolution and higher level Eubrachyuran systematics.

scholarly journals Complete Mitochondrial Genomes of Three Nuthatches From the Genus Sitta (Aves: Passeriformes: Sittidae) and Mitogenome-Based Phylogenetic Analysis

2021 ◽  
Author(s):  
Qing-Miao Yuan ◽  
Xu Luo ◽  
Jing Cao ◽  
Yu-Bao Duan
Keyword(s):  
Phylogenetic Analyses ◽  
Taxonomic Status ◽  
Sister Group ◽  
Gene Arrangement ◽  
Phylogenetic Position ◽  
Mitochondrial Genomes ◽  
Phylogenetic Relations ◽  
Genome Data ◽  
The Family ◽  
Complete Mitochondrial Genomes

Abstract Background Nuthatches (genus Sitta) comprise a group of Passeriformes. With the publication of more mitochondrial genome data, there has been considerable focus on the taxonomic status of the nuthatches. To understand the phylogenetic position of Sitta and phylogenetic relations within this genus, we sequenced and analyzed the complete mitochondrial genomes of three species, S. himalayensis, S. nagaensis and S. yunnanensis, making this the first account of complete mitochondrial genomes (mitogenomes) for this genus. Results The mitochondrial genomes of three Sitta species are 16,822-16,830 bp in length and consisted of 37 genes and a control region. This study recovered the same gene arrangement found in the mitogenomes of Gallus gallus, which is considered the typical ancestral avian gene order. All tRNAs were predicted to form the typical cloverleaf secondary structures. Bayesian inference and maximum likelihood phylogenetic analyses of sequences of 18 species obtained a well-supported topology. The family Sittidae is the sister-group of Troglodytidae, and the genus Sitta can be divided into 3 major clades. We demonstrated the phylogenetic relationships within genus Sitta (S. carolinensis + (S. villosa + S. yunnanensis + (S. himalayensis + (S. europaea + S. nagaensis)))).

scholarly journals Two Complete Mitochondrial Genomes of Mileewinae (Hemiptera: Cicadellidae) and a Phylogenetic Analysis

Insects ◽  
2021 ◽  
Vol 12 (8) ◽  
pp. 668
Author(s):  
Tinghao Yu ◽  
Yalin Zhang
Keyword(s):  
Phylogenetic Analysis ◽  
Phylogenetic Relationships ◽  
Phylogenetic Trees ◽  
Strong Support ◽  
Intergenic Spacer ◽  
Taxonomic Status ◽  
Start Codon ◽  
Gene Arrangement ◽  
Mitochondrial Genomes ◽  
Protein Coding

More studies are using mitochondrial genomes of insects to explore the sequence variability, evolutionary traits, monophyly of groups and phylogenetic relationships. Controversies remain on the classification of the Mileewinae and the phylogenetic relationships between Mileewinae and other subfamilies remain ambiguous. In this study, we present two newly completed mitogenomes of Mileewinae (Mileewa rufivena Cai and Kuoh 1997 and Ujna puerana Yang and Meng 2010) and conduct comparative mitogenomic analyses based on several different factors. These species have quite similar features, including their nucleotide content, codon usage of protein genes and the secondary structure of tRNA. Gene arrangement is identical and conserved, the same as the putative ancestral pattern of insects. All protein-coding genes of U. puerana began with the start codon ATN, while 5 Mileewa species had the abnormal initiation codon TTG in ND5 and ATP8. Moreover, M. rufivena had an intergenic spacer of 17 bp that could not be found in other mileewine species. Phylogenetic analysis based on three datasets (PCG123, PCG12 and AA) with two methods (maximum likelihood and Bayesian inference) recovered the Mileewinae as a monophyletic group with strong support values. All results in our study indicate that Mileewinae has a closer phylogenetic relationship to Typhlocybinae compared to Cicadellinae. Additionally, six species within Mileewini revealed the relationship (U. puerana + (M. ponta + (M. rufivena + M. alara) + (M. albovittata + M. margheritae))) in most of our phylogenetic trees. These results contribute to the study of the taxonomic status and phylogenetic relationships of Mileewinae.

Comparative morphology of extant raptorial Mantispoidea (Neuroptera: Mantispidae, Rhachiberothidae) suggests a non-monophyletic Mantispidae and a single origin of the raptorial condition within the superfamily

Zootaxa ◽  
2021 ◽  
Vol 4992 (1) ◽  
pp. 1-89
Author(s):  
ADRIAN ARDILA-CAMACHO ◽  
CALEB CALIFRE MARTINS ◽  
ULRIKE ASPÖCK ◽  
ATILANO CONTRERAS-RAMOS
Keyword(s):  
Phylogenetic Analysis ◽  
Comparative Morphology ◽  
Sister Group ◽  
Sister Group Relationship ◽  
Wing Venation ◽  
Morphological Studies ◽  
Starting Point ◽  
The Family ◽  
Evolutionary Context ◽  
New Interpretation

Adult external morphology of the extant raptorial Mantispoidea (Insecta: Neuroptera: Mantispidae and Rhachiberothidae) is compared emphasizing the morphology of the subfamily Symphrasinae as a key group to understand the phylogenetic relationships among the members of the superfamily. Plega dactylota Rehn, 1939 is thoroughly characterized in order to exemplify the morphology of the Symphrasinae. Additionally, following a review of the literature and examination of comparative material of Dilaridae, Berothidae, Rhachiberothidae and all Mantispidae subfamilies, a new interpretation of the components of the raptorial apparatus (i.e., head, prothorax, grasping forelegs, as well as integumentary specializations) is presented. Also, wing venation for these groups is reinterpreted, and new homology hypotheses for wing venation are proposed based on tracheation and comparative analyses. Given the high morphological divergence on the genital sclerites within the Mantispoidea, plus the confusing previous usage of neutral terminology and terms referring to appendages across taxonomic and morphological studies, we attempt to standardize, simplify, and situate terminology in an evolutionary context under the “gonocoxite concept” (multi-coxopod hypothesis). The remarkable morphological similarity of the genital sclerites of Symphrasinae and Rhachiberothidae (sensu U. Aspöck & Mansell 1994) with the Nallachinae (Dilaridae) was taken as a starting point to understand the morphology of other Mantispidae subfamilies. Based on these morphological comparisons, we provide a revised phylogenetic analysis of Mantispoidea. This new phylogenetic analysis supports a sister group relationship between the family Rhachiberothidae, comprising Rhachiberothinae and Symphrasinae, and the family Mantispidae, including the subfamily Mantispinae and its sister taxa Drepanicinae and Calomantispinae, which may represent a single subfamily. Based on these analyses, raptorial condition probably evolved a single time in these insects and subsequently became diversified in the two sister clades of the raptorial Mantispoidea.  

scholarly journals Flightless Disphaerona rediscovered in China: mtDNA phylogeography of the Yunnan clade and the sobering state of fungus weevil phylogenetics (Coleoptera: Anthribidae)

2016 ◽  
Vol 48 (2) ◽  
pp. 89 ◽  
Author(s):  
Vasily V. Grebennikov
Keyword(s):  
Phylogenetic Analysis ◽  
Dna Barcode ◽  
Sister Group ◽  
The State ◽  
Female Genitalia ◽  
Dabie Mountains ◽  
Male And Female ◽  
The Family

This paper reports discovery of the genus <em>Disphaerona</em> Jordan, 1902 in two widely separated regions in China: in three isolated highlands in Yunnan (the Cang Shan Range, Mt. Jizu and Mt. Haba) and in the Dabie Mountains of Hubei, at the border with Anhui. Till present the genus was known from China only from four specimens of<em> D.</em> <em>chinensis</em> (including its holotype) described from Sichuan in 1995. Sixteen specimens from each of the three newly detected localities in Yunnan were DNA barcoded and the data were made publicly available at dx.doi.org/10.5883/DS-DISPHAE. Temporal phylogenetic analysis revealed a topology suggesting monophyly and recent (0.2–0.4 Ma) origin of the populations on both Mt. Jizu and Mt. Haba. The population on the Cang Shan Range harbours representatives of both clades forming the ingroup, mtDNA of which diverged some 7.9 Ma. The habitus of the holotype of the only nominative Chinese <em>Disphaerona</em> species, <em>D. chinensis,</em> is illustrated, together with habitus and male and female genitalia of specimens newly discovered in both Yunnan and Hubei. All specimens of <em>Disphaerona</em> from Yunnan are seemingly conspecific and are taxonomically assigned to D. chinensis. Two similar males and one sympatric but dissimilar, smaller female from the Dabie Mountains do not have associated DNA barcode data. It remains unknown whether the three Dabie Mountains specimens are conspecific or even congeneric; pending this uncertainty they are tentatively treated as <em>Disphaerona</em> without a Linnaean name. <em>Disphaerona</em> population in the Dabie Mountains, if indeed a member of this hypothesised clade, forms the easternmost record of the genus. Monophyly and sister group of <em>Disphaerona</em> are briefly discussed and both are shown as unknown and unverifiable. A brief overview of the state of phylogenetic knowledge of Anthribidae is given, which is practically non-existing and with neither the family, nor any of its tribes and the vast majority of genera tested as monophyletic.

scholarly journals Taxonomic revision and phylogenetic relationships of Dasyloricaria Isbrücker & Nijssen, 1979 (Siluriformes: Loricariidae), with description of a new species

2016 ◽  
Vol 14 (1) ◽  
Author(s):  
Alejandro Londoño-Burbano ◽  
Roberto E. Reis
Keyword(s):  
Phylogenetic Analysis ◽  
New Species ◽  
Phylogenetic Relationships ◽  
Taxonomic Revision ◽  
Sister Group ◽  
Valid Species ◽  
Maracaibo Basin ◽  
New Synonyms ◽  
Branchial Arches ◽  
A New Species

ABSTRACT A taxonomic revision and phylogenetic analysis were completed for Dasyloricaria . The genus includes three valid species: D . filamentosa and D . latiura previously included in the genus, and a new species described herein. Dasyloricaria have a restricted trans-Andean distribution, with D . filamentosa occurring at the lower and middle Magdalena, lower Cauca, and Sinu in Colombia, and lago Maracaibo basin in Colombia and Venezuela; D . latiura in the Atrato and the Tuyra basins in Colombia and Panama, respectively; and the new species in the upper and middle Magdalena basin in Colombia. New synonyms for D . filamentosa and D . latiura are proposed, and a lectotype is designated for the latter. Dasyloricaria is herein recognized as monophyletic, with D . filamentosa as the sister group of D . latiura , and the new speciesas sister to that clade. Spatuloricaria is hypothesized to be the sister group of Dasyloricaria based on synapomorphies of the neurocranium, branchial arches and external morphology features. The subtribe Rineloricariina was partially corroborated through the phylogenetic analysis. An identification key for the species of Dasyloricaria is provided.

scholarly journals Cretaceous origin and repeated tertiary diversification of the redefined butterflies

2011 ◽  
Vol 279 (1731) ◽  
pp. 1093-1099 ◽  
Author(s):  
Maria Heikkilä ◽  
Lauri Kaila ◽  
Marko Mutanen ◽  
Carlos Peña ◽  
Niklas Wahlberg
Keyword(s):  
Phylogenetic Analysis ◽  
Phylogenetic Relationships ◽  
Evolutionary History ◽  
Sister Group ◽  
Morphological Characters ◽  
Molecular Data ◽  
Bayesian Approaches ◽  
The Family ◽  
Family Level ◽  
Morphological And Molecular Data

Although the taxonomy of the ca 18 000 species of butterflies and skippers is well known, the family-level relationships are still debated. Here, we present, to our knowledge, the most comprehensive phylogenetic analysis of the superfamilies Papilionoidea, Hesperioidea and Hedyloidea to date based on morphological and molecular data. We reconstructed their phylogenetic relationships using parsimony and Bayesian approaches. We estimated times and rates of diversification along lineages in order to reconstruct their evolutionary history. Our results suggest that the butterflies, as traditionally understood, are paraphyletic, with Papilionidae being the sister-group to Hesperioidea, Hedyloidea and all other butterflies. Hence, the families in the current three superfamilies should be placed in a single superfamily Papilionoidea. In addition, we find that Hedylidae is sister to Hesperiidae, and this novel relationship is supported by two morphological characters. The families diverged in the Early Cretaceous but diversified after the Cretaceous–Palaeogene event. The diversification of butterflies is characterized by a slow speciation rate in the lineage leading to Baronia brevicornis , a period of stasis by the skippers after divergence and a burst of diversification in the lineages leading to Nymphalidae, Riodinidae and Lycaenidae.

Phylogeny of the Mycetophiliformia, with proposal of the subfamilies  Heterotrichinae, Ohakuneinae, and Chiletrichinae for the Rangomaramidae (Diptera, Bibionomorpha)

Zootaxa ◽  
2007 ◽  
Vol 1535 (1) ◽  
pp. 1-92 ◽  
Author(s):  
DALTON DE SOUZA AMORIM ◽  
EIRIK RINDAL
Keyword(s):  
Phylogenetic Analysis ◽  
New Species ◽  
Sister Group ◽  
Data Matrix ◽  
Southern Brazil ◽  
The Family ◽  
First Time ◽  
A New Species ◽  
Transformation Series

A phylogenetic analysis of the Mycetophiliformia (= Sciaroidea) was performed to determine the relationships among its families and to place the following genera of uncertain position in the system: Heterotricha, Ohakunea, Colonomyia, Freemanomyia, Rhynchoheterotricha, Chiletricha, Afrotricha, Anisotricha, Kenyatricha, Nepaletricha, Sciarosoma, Sciaropota, Insulatricha, Cabamofa, Rogambara, and Starkomyia. Eratomyia n. gen. is described based on a new species from Ecuador. Colonomyia brasiliana sp.n. and Colonomyia freemani sp.n. are described respectively from southern Brazil and Chile. The male of Cabamofa mira Jaschhof is described for the first time. A total of 64 terminal taxa and 137 transformation series (with 202 characters) were included in the data matrix, with a number of new features from thoracic morphology. Willi Hennig’s 1973 system for the higher Bibionomorpha was adopted using the name Mycetophiliformia for the Sciaroidea. The Mycetophiliformia are monophyletic. The family Cecidomyiidae appears as the sister group of the remaining Mycetophiliformia, followed by the Sciaridae. In the preferred topology, the Rangomaramidae appear as the group sister of a clade consisting of (Ditomyiidae + Bolitophilidae + Diadocidiidae + Keroplatidae) and of (Lygistorrhinidae + Mycetophilidae). The topology within the Rangomaramidae is (Chiletrichinae subfam. n. (Heterotrichinae subfam. n. ((Rangomaraminae + Ohakuneinae subfam. n.))). The Chiletrichinae include the genera Kenyatricha, Rhynchoheterotricha, Insulatricha, Chiletricha, and Eratomyia n. gen. Heterotrichinae and Rangomaraminae are monotypic. The subfamily Ohakuneinae includes Ohakunea, Colonomyia, Cabamofa, and Rogambara. The positions of Freemanomyia, Loicia, Taxicnemis, Sciaropota, Starkomyia, Anisotricha, Nepaletricha, and Sciarosoma are considered. Afrotricha might belong to the Sciaridae. The similarities used by many authors to gather the Sciaridae and Mycetophilidae in a clade are shown to be a combination of plesiomorphies and homoplasies.

The placement of the spider genus Periegops and the phylogeny of Scytodoidea (Araneae: Araneomorphae)

Zootaxa ◽  
2012 ◽  
Vol 3312 (1) ◽  
pp. 1 ◽  
Author(s):  
FACUNDO M. LABARQUE ◽  
MARTÍN J. RAMÍREZ
Keyword(s):  
Phylogenetic Analysis ◽  
Sister Group ◽  
Median Lobe ◽  
Posterior Median ◽  
The Third ◽  
The Family ◽  
Long Time

The relationships of Scytodoidea, including the families Drymusidae, Periegopidae, Scytodidae and Sicariidae, have been con-tentious for a long time. Here we present a reviewed phylogenetic analysis of scytodoid spiders, emphasizing Periegops, theonly genus in the family Periegopidae. In our analysis the Scytodoidea are united by the fusion of the third abdominal entapo-physes into a median lobe, the presence of female palpal femoral thorns and associated cheliceral stridulatory ridges, a mem-branous lobe on the cheliceral promargin, and the loss of minor ampullate gland spigots. A basal split within Scytodoideadefines two monophyletic groups: Sicariidae and a group formed by Scytodidae as the sister group of Periegopidae plus Dry-musidae, all united by having bipectinate prolateral claws on tarsi I–II, one major ampullate spigot accompanied by a nubbin,and the posterior median spinnerets with a mesal field of spicules. Periegops is the sister group of Drymusidae, united by the regain of promarginal cheliceral teeth and a triangular cheliceral lamina, which is continuous with the paturon margin.

A cladistic analysis of the Holarctic genera of adelid moths (Lepidoptera: Incur varoidea)

1980 ◽  
Vol 11 (2) ◽  
pp. 161-178 ◽  
Author(s):  
Ebbe Schmidt Nielsen
Keyword(s):  
Phylogenetic Analysis ◽  
Cladistic Analysis ◽  
Sister Group ◽  
Generic Status ◽  
New Synonym ◽  
The Family

AbstractA preliminary cladistic-phylogenetic analysis of the four Holarctic genera of Adelidae recognized is presented. The monophyly of the superfamily Incurvarioidea is demonstrated on the basis of three possible synapomorphies, and that of the family Adelidae on the basis of three others. The subgenus Cauchas Zeller, 1839 is given generic status, as it is demonstrated to represent the sister-group of Nemophora Illiger & Hoffmannsegg, 1798 and Adela Latreille, 1796. Chalceopla Braun, 1921 is a new synonym of Cauchas Zeller, 1839. A key to the genera, based on males, is given.

scholarly journals Restructuring the Ancorabolidae Sars (Copepoda, Harpacticoida) and Cletodidae T. Scott, with a new phylogenetic hypothesis regarding the relationships of the Laophontoidea T. Scott, Ancorabolidae and Cletodidae

2020 ◽  
Vol 96 (2) ◽  
pp. 455-498
Author(s):  
Kai Horst George
Keyword(s):  
Phylogenetic Analysis ◽  
Phylogenetic Relationships ◽  
Morphological Characteristics ◽  
Sister Group ◽  
Morphological Characters ◽  
Sister Group Relationship ◽  
Phylogenetic Hypothesis ◽  
The Family ◽  
Swimming Leg

Uncovering the systematics of CopepodaHarpacticoida, the second-most abundant component of the meiobenthos after Nematoda, is of major importance for any further research dedicated especially to ecological and biogeographical approaches. Based on the evolution of the podogennontan first swimming leg, a new phylogenetic concept of the Ancorabolidae Sars and Cletodidae T. Scott sensu Por (Copepoda, Harpacticoida) is presented, using morphological characteristics. It confirms the polyphyletic status of the Ancorabolidae and its subfamily Ancorabolinae Sars and the paraphyletic status of the subfamily Laophontodinae Lang. Moreover, it clarifies the phylogenetic relationships of the so far assigned members of the family. An exhaustive phylogenetic analysis was undertaken using 150 morphological characters, resulting in the establishment of a now well-justified monophylum Ancorabolidae. In that context, the Ancorabolus-lineage sensu Conroy-Dalton and Huys is elevated to sub-family rank. Furthermore, the membership of Ancorabolina George in a rearranged monophylum Laophontodinae is confirmed. Conversely, the Ceratonotus-group sensu Conroy-Dalton is transferred from the hitherto Ancorabolinae to the Cletodidae. Within these, the Ceratonotus-group and its hypothesised sister-group Cletodes Brady are combined to form a monophyletic subfamily Cletodinae T. Scott, subfam. nov. Consequently, it was necessary to restructure the Ancorabolidae, Ancorabolinae and Laophontodinae and extend the Cletodidae to include the displacement and exclusion of certain taxa. Moreover, comparison of the Ancorabolidae, Cletodidae, Laophontoidea and other Podogennonta shows that the Ancorabolidae and Cletodidae form sister-groups in a monophylum Cletodoidea Bowman and Abele, which similarly has a sister-group-relationship with the Laophontoidea T. Scott. According to the present study, both taxa constitute a derived monophylum within the Podogennonta Lang.

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