scholarly journals $\mathfrak{q}$-Crystal Structure on Primed Tableaux and on Signed Unimodal Factorizations of Reduced Words of Type $B$

2019 ◽  
Vol 55 (2) ◽  
pp. 369-399 ◽  
Author(s):  
Toya Hiroshima
2016 ◽  
Vol 473 (9) ◽  
pp. 1225-1236 ◽  
Author(s):  
Alexandra D. Kharlamova ◽  
Sofya V. Lushchekina ◽  
Konstantin A. Petrov ◽  
Ekaterina D. Kots ◽  
Florian Nachon ◽  
...  

Inhibition of human AChE (acetylcholinesterase) and BChE (butyrylcholinesterase) by an alkylammonium derivative of 6-methyluracil, C-547, a potential drug for the treatment of MG (myasthenia gravis) was studied. Kinetic analysis of AChE inhibition showed that C-547 is a slow-binding inhibitor of type B, i.e. after formation of the initial enzyme·inhibitor complex (Ki=140 pM), an induced-fit step allows establishment of the final complex (Ki*=22 pM). The estimated koff is low, 0.05 min−1. On the other hand, reversible inhibition of human BChE is a fast-binding process of mixed-type (Ki=1.77 μM; Ki′=3.17 μM). The crystal structure of mouse AChE complexed with C-547 was solved at 3.13 Å resolution. The complex is stabilized by cation–π, stacking and hydrogen-bonding interactions. Molecular dynamics simulations of the binding/dissociation processes of C-547 and C-35 (a non-charged analogue) to mouse and human AChEs were performed. Molecular modelling on mouse and human AChE showed that the slow step results from an enzyme conformational change that allows C-547 to cross the bottleneck in the active-site gorge, followed by formation of tight complex, as observed in the crystal structure. In contrast, the related non-charged compound C-35 is not a slow-binding inhibitor. It does not cross the bottleneck because it is not sensitive to the electrostatic driving force to reach the bottom of the gorge. Thus C-547 is one of the most potent and selective reversible inhibitors of AChE with a long residence time, τ=20 min, longer than for other reversible inhibitors used in the treatment of MG. This makes C-547 a promising drug for the treatment of this disease.


2015 ◽  
Vol 57 (4) ◽  
pp. 233-238
Author(s):  
Sho AMATSU ◽  
Yo SUGAWARA ◽  
Yukako FUJINAGA ◽  
Kengo KITADOKORO

10.37236/4384 ◽  
2014 ◽  
Vol 21 (4) ◽  
Author(s):  
Sara Billey ◽  
Zachary Hamaker ◽  
Austin Roberts ◽  
Benjamin Young

We define an analog of David Little’s algorithm for reduced words in type B, and investigate its main properties. In particular, we show that our algorithm preserves the recording tableau of Kraśkiewicz insertion, and that it provides a bijective realization of the Type B transition equations in Schubert calculus. Many other aspects of type A theory carry over to this new setting. Our primary tool is a shifted version of the dual equivalence graphs defined by Assaf and further developed by Roberts. We provide an axiomatic characterization of shifted dual equivalence graphs, and use them to prove a structure theorem for the graph of Type B Coxeter-Knuth relations. 


2015 ◽  
Vol DMTCS Proceedings, 27th... (Proceedings) ◽  
Author(s):  
Zachary Hamaker ◽  
Nathan Williams

International audience Using the powerful machinery available for reduced words of type $B$, we demonstrate a bijection between centrally symmetric $k$-triangulations of a $2(n + k)$-gon and plane partitions of height at most $k$ in a square of size $n$. This bijection can be viewed as the type $B$ analogue of a bijection for $k$-triangulations due to L. Serrano and C. Stump. En utilisant la machinerie puissante pour mots réduits de type $B$, nous démontrons une bijection entre les $k$-triangulations centralement symétriques d’un $2(n + k)$-gon et les partitions de plans de hauteur inférieure ou égale à $k$ dans un carré de taille $n$. Cette bijection peut être considérée comme l’analogue de type $B$ d’une bijection de $k$-triangulations due à L. Serrano et C. Stump.


Author(s):  
V. GENZ ◽  
G. KOSHEVOY ◽  
B. SCHUMANN

AbstractWe give a formula for the crystal structure on the integer points of the string polytopes and the *-crystal structure on the integer points of the string cones of type A for arbitrary reduced words. As a byproduct, we obtain defining inequalities for Nakashima–Zelevinsky string polytopes. Furthermore, we give an explicit description of the Kashiwara *-involution on string data for a special choice of reduced word.


1999 ◽  
Vol 96 (7) ◽  
pp. 3600-3605 ◽  
Author(s):  
K.-P. Hopfner ◽  
A. Eichinger ◽  
R. A. Engh ◽  
F. Laue ◽  
W. Ankenbauer ◽  
...  

2010 ◽  
Vol 84 (23) ◽  
pp. 12265-12273 ◽  
Author(s):  
Ye Xiang ◽  
Ulrich Baxa ◽  
Ying Zhang ◽  
Alasdair C. Steven ◽  
Gentry L. Lewis ◽  
...  

ABSTRACT The chloroviruses (family Phycodnaviridae), unlike most viruses, encode some, if not most, of the enzymes involved in the glycosylation of their structural proteins. Annotation of the gene product B736L from chlorovirus NY-2A suggests that it is a glycosyltransferase. The structure of the recombinantly expressed B736L protein was determined by X-ray crystallography to 2.3-Å resolution, and the protein was shown to have two nucleotide-binding folds like other glycosyltransferase type B enzymes. This is the second structure of a chlorovirus-encoded glycosyltransferase and the first structure of a chlorovirus type B enzyme to be determined. B736L is a retaining enzyme and belongs to glycosyltransferase family 4. The donor substrate was identified as GDP-mannose by isothermal titration calorimetry and was shown to bind into the cleft between the two domains in the protein. The active form of the enzyme is probably a dimer in which the active centers are separated by about 40 Å.


2014 ◽  
Vol 446 (2) ◽  
pp. 568-573 ◽  
Author(s):  
Kwangkook Lee ◽  
Kwok-Ho Lam ◽  
Anna Magdalena Kruel ◽  
Kay Perry ◽  
Andreas Rummel ◽  
...  

Author(s):  
Douglas L. Dorset ◽  
Anthony J. Hancock

Lipids containing long polymethylene chains were among the first compounds subjected to electron diffraction structure analysis. It was only recently realized, however, that various distortions of thin lipid microcrystal plates, e.g. bends, polar group and methyl end plane disorders, etc. (1-3), restrict coherent scattering to the methylene subcell alone, particularly if undistorted molecular layers have well-defined end planes. Thus, ab initio crystal structure determination on a given single uncharacterized natural lipid using electron diffraction data can only hope to identify the subcell packing and the chain axis orientation with respect to the crystal surface. In lipids based on glycerol, for example, conformations of long chains and polar groups about the C-C bonds of this moiety still would remain unknown.One possible means of surmounting this difficulty is to investigate structural analogs of the material of interest in conjunction with the natural compound itself. Suitable analogs to the glycerol lipids are compounds based on the three configurational isomers of cyclopentane-1,2,3-triol shown in Fig. 1, in which three rotameric forms of the natural glycerol derivatives are fixed by the ring structure (4-7).


Sign in / Sign up

Export Citation Format

Share Document