scholarly journals Development and evaluation of a new compact mechanism for aromatic oxidation in atmospheric models

2021 ◽  
Vol 21 (24) ◽  
pp. 18351-18374
Author(s):  
Kelvin H. Bates ◽  
Daniel J. Jacob ◽  
Ke Li ◽  
Peter D. Ivatt ◽  
Mat J. Evans ◽  
...  
Keyword(s):  
Atmospheric Chemistry ◽  
Transport Model ◽  
Current Knowledge ◽  
Chemical Transport Model ◽  
Chemical Mechanisms ◽  
Regional Effects ◽  
Benzene Toluene ◽  
Hydrogen Oxide ◽  
Environmental Chamber Data ◽  
Compact Mechanism

Abstract. Aromatic hydrocarbons, including benzene, toluene, and xylenes, play an important role in atmospheric chemistry, but the associated chemical mechanisms are complex and uncertain. Sparing representation of this chemistry in models is needed for computational tractability. Here, we develop a new compact mechanism for aromatic chemistry (GC13) that captures current knowledge from laboratory and computational studies with only 17 unique species and 44 reactions. We compare GC13 to six other currently used mechanisms of varying complexity in box model simulations of environmental chamber data and diurnal boundary layer chemistry, and show that GC13 provides results consistent with or better than more complex mechanisms for oxygenated products (alcohols, carbonyls, dicarbonyls), ozone, and hydrogen oxide (HOx≡OH+HO2) radicals. Specifically, GC13 features increased radical recycling and increased ozone destruction from phenoxy–phenylperoxy radical cycling relative to other mechanisms. We implement GC13 into the GEOS-Chem global chemical transport model and find higher glyoxal yields and net ozone loss from aromatic chemistry compared with other mechanisms. Aromatic oxidation in the model contributes 23 %, 5 %, and 8 % of global glyoxal, methylglyoxal, and formic acid production, respectively, and has mixed effects on formaldehyde. It drives small decreases in global tropospheric OH (−2.2 %), NOx (≡NO+NO2; −3.7 %), and ozone (−0.8 %), but a large increase in NO3 (+22 %) from phenoxy–phenylperoxy radical cycling. Regional effects in polluted environments can be substantially larger, especially from the photolysis of carbonyls produced by aromatic oxidation, which drives large wintertime increases in OH and ozone concentrations.

scholarly journals Development and evaluation of a new compact mechanism for aromatic oxidation in atmospheric models

2021 ◽  
Author(s):  
Kelvin Bates ◽  
Daniel Jacob ◽  
Ke Li ◽  
Peter Ivatt ◽  
Mat Evans ◽  
...  
Keyword(s):  
Atmospheric Chemistry ◽  
Transport Model ◽  
Current Knowledge ◽  
Chemical Transport Model ◽  
Chemical Mechanisms ◽  
Regional Effects ◽  
Benzene Toluene ◽  
Hydrogen Oxide ◽  
Environmental Chamber Data ◽  
Compact Mechanism

Abstract. Aromatic hydrocarbons (mainly benzene, toluene, and xylenes) play an important role in atmospheric chemistry but the associated chemical mechanisms are complex and uncertain. Spare representation of this chemistry in models is needed for computational tractability. Here we develop a new compact mechanism for aromatic chemistry (GC13) that captures current knowledge from laboratory and computational studies with only 17 unique species and 44 reactions. We compare GC13 to six other currently used mechanisms of varying complexity in box model simulations of environmental chamber data and diurnal boundary layer chemistry, and show that GC13 provides results consistent with or better than more complex mechanisms for oxygenated products (alcohols, carbonyls, dicarbonyls), ozone, and hydrogen oxide (HOx ≡ OH + HO2) radicals. GC13 features in particular increased radical recycling and increased ozone destruction from phenoxy-phenylperoxy radical cycling relative to other mechanisms. We implement GC13 into the GEOS-Chem global chemical transport model and find higher glyoxal yields and net ozone loss from aromatic chemistry compared to other mechanisms. Aromatic oxidation in the model contributes 23 %, 5 %, and 8 % of global glyoxal, methylglyoxal, and formic acid production respectively, and has mixed effects on formaldehyde. It drives small decreases in global tropospheric OH (−2.2 %), NOx (≡ NO + NO2; −3.7 %) and ozone (−0.8 %), but a large increase in NO3 (+22 %) from phenoxy-phenylperoxy radical cycling. Regional effects in polluted environments can be substantially larger, especially from photolysis of carbonyls produced by aromatic oxidation, which drives large wintertime increases in OH and ozone concentrations.

scholarly journals The Chemistry CATT-BRAMS model (CCATT-BRAMS 4.5): a regional atmospheric model system for integrated air quality and weather forecasting and research

2013 ◽  
Vol 6 (5) ◽  
pp. 1389-1405 ◽  
Author(s):  
K. M. Longo ◽  
S. R. Freitas ◽  
M. Pirre ◽  
V. Marécal ◽  
L. F. Rodrigues ◽  
...  
Keyword(s):  
Atmospheric Chemistry ◽  
Amazon Basin ◽  
Weather Forecasting ◽  
Transport Model ◽  
Atmospheric Modeling ◽  
Model Description ◽  
Tracer Transport ◽  
Chemical Transport Model ◽  
Chemical Mechanisms ◽  
On Line

Abstract. Coupled Chemistry Aerosol-Tracer Transport model to the Brazilian developments on the Regional Atmospheric Modeling System (CCATT-BRAMS, version 4.5) is an on-line regional chemical transport model designed for local and regional studies of atmospheric chemistry from the surface to the lower stratosphere suitable both for operational and research purposes. It includes gaseous/aqueous chemistry, photochemistry, scavenging and dry deposition. The CCATT-BRAMS model takes advantage of BRAMS-specific development for the tropics/subtropics as well as the recent availability of preprocessing tools for chemical mechanisms and fast codes for photolysis rates. BRAMS includes state-of-the-art physical parameterizations and dynamic formulations to simulate atmospheric circulations down to the meter. This on-line coupling of meteorology and chemistry allows the system to be used for simultaneous weather and chemical composition forecasts as well as potential feedback between the two. The entire system is made of three preprocessing software tools for user-defined chemical mechanisms, aerosol and trace gas emissions fields and the interpolation of initial and boundary conditions for meteorology and chemistry. In this paper, the model description is provided along with the evaluations performed by using observational data obtained from ground-based stations, instruments aboard aircrafts and retrieval from space remote sensing. The evaluation accounts for model applications at different scales from megacities and the Amazon Basin up to the intercontinental region of the Southern Hemisphere.

scholarly journals Sunset–sunrise difference in solar occultation ozone measurements (SAGE II, HALOE, and ACE–FTS) and its relationship to tidal vertical winds

2015 ◽  
Vol 15 (2) ◽  
pp. 829-843 ◽  
Author(s):  
T. Sakazaki ◽  
M. Shiotani ◽  
M. Suzuki ◽  
D. Kinnison ◽  
J. M. Zawodny ◽  
...  
Keyword(s):  
Atmospheric Chemistry ◽  
Seasonal Variations ◽  
Climate Model ◽  
Transport Model ◽  
Stratospheric Aerosol ◽  
Data Sets ◽  
Chemical Transport Model ◽  
Latitude Range ◽  
Solar Occultation ◽  
Vertical Winds

Abstract. This paper contains a comprehensive investigation of the sunset–sunrise difference (SSD, i.e., the sunset-minus-sunrise value) of the ozone mixing ratio in the latitude range of 10° S–10° N. SSD values were determined from solar occultation measurements based on data obtained from the Stratospheric Aerosol and Gas Experiment (SAGE) II, the Halogen Occultation Experiment (HALOE), and the Atmospheric Chemistry Experiment–Fourier transform spectrometer (ACE–FTS). The SSD was negative at altitudes of 20–30 km (−0.1 ppmv at 25 km) and positive at 30–50 km (+0.2 ppmv at 40–45 km) for HALOE and ACE–FTS data. SAGE II data also showed a qualitatively similar result, although the SSD in the upper stratosphere was 2 times larger than those derived from the other data sets. On the basis of an analysis of data from the Superconducting Submillimeter-Wave Limb-Emission Sounder (SMILES) and a nudged chemical transport model (the specified dynamics version of the Whole Atmosphere Community Climate Model: SD–WACCM), we conclude that the SSD can be explained by diurnal variations in the ozone concentration, particularly those caused by vertical transport by the atmospheric tidal winds. All data sets showed significant seasonal variations in the SSD; the SSD in the upper stratosphere is greatest from December through February, while that in the lower stratosphere reaches a maximum twice: during the periods March–April and September–October. Based on an analysis of SD–WACCM results, we found that these seasonal variations follow those associated with the tidal vertical winds.

scholarly journals Ethane, ethyne and carbon monoxide concentrations in the upper troposphere and lower stratosphere from ACE and GEOS-Chem: a comparison study

2011 ◽  
Vol 11 (4) ◽  
pp. 13099-13139 ◽  
Author(s):  
G. González Abad ◽  
N. D. C. Allen ◽  
P. F. Bernath ◽  
C. D. Boone ◽  
S. D. McLeod ◽  
...  
Keyword(s):  
Carbon Monoxide ◽  
Atmospheric Chemistry ◽  
Transport Model ◽  
Chemical Mechanism ◽  
Chemical Transport Model ◽  
Spectrometer Data ◽  
Chemistry Experiment ◽  
Global Mean ◽  
Tropospheric Concentrations ◽  
Good Agreement

Abstract. Near global upper tropospheric concentrations of carbon monoxide (CO), ethane (C2H6) and ethyne (C2H2) from ACE (Atmospheric Chemistry Experiment) Fourier transform spectrometer on board the Canadian satellite SCISAT-1 are presented and compared with the output from the Chemical Transport Model (CTM) GEOS-Chem. The retrievals of ethane and ethyne from ACE have been improved for this paper by using new sets of microwindows compared with those for previous versions of ACE data. With the improved ethyne retrieval we have been able to produce a near global upper tropospheric distribution of C2H2 from space. Carbon monoxide, ethane and ethyne concentrations retrieved using ACE spectra show the expected seasonality linked to variations in the anthropogenic emissions and destruction rates as well as seasonal biomass burning activity. The GEOS-Chem model was run using the dicarbonyl chemistry suite, an extended chemical mechanism in which ethyne is treated explicitly. Seasonal cycles observed from satellite data are well reproduced by the model output, however the simulated CO concentrations are found to be systematically biased low over the Northern Hemisphere. An average negative global mean bias of 12% and 7% of the model relative to the satellite observations has been found for CO and C2H6 respectively and a positive global mean bias of 1% has been found for C2H2. ACE data are compared for validation purposes with MkIV spectrometer data and Global Tropospheric Experiment (GTE) TRACE-A campaign data showing good agreement with all of them.

scholarly journals Sunset–sunrise difference in solar occultation ozone measurements (SAGE II, HALOE, and ACE–FTS) and its relationship to tidal vertical winds

2014 ◽  
Vol 14 (11) ◽  
pp. 16043-16083
Author(s):  
T. Sakazaki ◽  
M. Shiotani ◽  
M. Suzuki ◽  
D. Kinnison ◽  
J. M. Zawodny ◽  
...  
Keyword(s):  
Atmospheric Chemistry ◽  
Seasonal Variations ◽  
Climate Model ◽  
Transport Model ◽  
Stratospheric Aerosol ◽  
Chemical Transport Model ◽  
Latitude Range ◽  
Solar Occultation ◽  
Vertical Winds ◽  
Chemistry Experiment

Abstract. This paper contains a comprehensive investigation of the sunset–sunrise difference (SSD; i.e., the sunset-minus-sunrise value) of the ozone mixing ratio in the latitude range of 10° S–10° N. SSD values were determined from solar occultation measurements based on data obtained from the Stratospheric Aerosol and Gas Experiment (SAGE) II, the Halogen Occultation Experiment (HALOE), and the Atmospheric Chemistry Experiment Fourier Transform Spectrometer (ACE-FTS). The SSD was negative at altitudes of 20–30 km (–0.1 ppmv at 25 km) and positive at 30–50 km (+0.2 ppmv at 40–45 km) for HALOE and ACE–FTS data. SAGE II data also showed a qualitatively similar result, although the SSD in the upper stratosphere was two times larger than those derived from the other datasets. On the basis of an analysis of data from the Superconducting Submillimeter Limb Emission Sounder (SMILES), and a nudged chemical-transport model (the Specified Dynamics version of the Whole Atmosphere Community Climate Model: SD–WACCM), we conclude that the SSD can be explained by diurnal variations in the ozone concentration, particularly those caused by vertical transport by the atmospheric tidal winds. All datasets showed significant seasonal variations in the SSD; the SSD in the upper stratosphere is greatest from December through February, while that in the lower stratosphere reaches a maximum twice: during the periods March–April and September–October. Based on an analysis of SD–WACCM results, we found that these seasonal variations follow those associated with the tidal vertical winds.

scholarly journals Implementation of Yale Interactive terrestrial Biosphere model v1.0 into GEOS-Chem v12.0.0: a tool for biosphere–chemistry interactions

2020 ◽  
Vol 13 (3) ◽  
pp. 1137-1153 ◽  
Author(s):  
Yadong Lei ◽  
Xu Yue ◽  
Hong Liao ◽  
Cheng Gong ◽  
Lin Zhang
Keyword(s):  
Stomatal Conductance ◽  
Atmospheric Chemistry ◽  
Dry Deposition ◽  
Transport Model ◽  
Surface Ozone ◽  
Eastern China ◽  
Deposition Velocity ◽  
Chemical Transport Model ◽  
Terrestrial Biosphere ◽  
Area Index

Abstract. The terrestrial biosphere and atmospheric chemistry interact through multiple feedbacks, but the models of vegetation and chemistry are developed separately. In this study, the Yale Interactive terrestrial Biosphere (YIBs) model, a dynamic vegetation model with biogeochemical processes, is implemented into the Chemical Transport Model GEOS-Chem (GC) version 12.0.0. Within this GC-YIBs framework, leaf area index (LAI) and canopy stomatal conductance dynamically predicted by YIBs are used for dry deposition calculation in GEOS-Chem. In turn, the simulated surface ozone (O3) by GEOS-Chem affect plant photosynthesis and biophysics in YIBs. The updated stomatal conductance and LAI improve the simulated O3 dry deposition velocity and its temporal variability for major tree species. For daytime dry deposition velocities, the model-to-observation correlation increases from 0.69 to 0.76, while the normalized mean error (NME) decreases from 30.5 % to 26.9 % using the GC-YIBs model. For the diurnal cycle, the NMEs decrease by 9.1 % for Amazon forests, 6.8 % for coniferous forests, and 7.9 % for deciduous forests using the GC-YIBs model. Furthermore, we quantify the damaging effects of O3 on vegetation and find a global reduction of annual gross primary productivity by 1.5 %–3.6 %, with regional extremes of 10.9 %–14.1 % in the eastern USA and eastern China. The online GC-YIBs model provides a useful tool for discerning the complex feedbacks between atmospheric chemistry and the terrestrial biosphere under global change.

scholarly journals Development of a grid-independent GEOS-Chem chemical transport model (v9-02) as an atmospheric chemistry module for Earth system models

2015 ◽  
Vol 8 (3) ◽  
pp. 595-602 ◽  
Author(s):  
M. S. Long ◽  
R. Yantosca ◽  
J. E. Nielsen ◽  
C. A. Keller ◽  
A. da Silva ◽  
...  
Keyword(s):  
Atmospheric Chemistry ◽  
Transport Model ◽  
Chemical Transport ◽  
Earth System ◽  
Chemical Transport Model ◽  
Modeling Framework ◽  
System Models ◽  
Chemistry Research ◽  
Earth System Models ◽  
Chemistry Module

Abstract. The GEOS-Chem global chemical transport model (CTM), used by a large atmospheric chemistry research community, has been re-engineered to also serve as an atmospheric chemistry module for Earth system models (ESMs). This was done using an Earth System Modeling Framework (ESMF) interface that operates independently of the GEOS-Chem scientific code, permitting the exact same GEOS-Chem code to be used as an ESM module or as a stand-alone CTM. In this manner, the continual stream of updates contributed by the CTM user community is automatically passed on to the ESM module, which remains state of science and referenced to the latest version of the standard GEOS-Chem CTM. A major step in this re-engineering was to make GEOS-Chem grid independent, i.e., capable of using any geophysical grid specified at run time. GEOS-Chem data sockets were also created for communication between modules and with external ESM code. The grid-independent, ESMF-compatible GEOS-Chem is now the standard version of the GEOS-Chem CTM. It has been implemented as an atmospheric chemistry module into the NASA GEOS-5 ESM. The coupled GEOS-5–GEOS-Chem system was tested for scalability and performance with a tropospheric oxidant-aerosol simulation (120 coupled species, 66 transported tracers) using 48–240 cores and message-passing interface (MPI) distributed-memory parallelization. Numerical experiments demonstrate that the GEOS-Chem chemistry module scales efficiently for the number of cores tested, with no degradation as the number of cores increases. Although inclusion of atmospheric chemistry in ESMs is computationally expensive, the excellent scalability of the chemistry module means that the relative cost goes down with increasing number of cores in a massively parallel environment.

A recent slowdown in the decline of CFC-11 concentrations in the upper troposphere

2020 ◽  
Author(s):  
Patrick Sheese ◽  
Kaley Walker ◽  
Chris Boone ◽  
Laura Saunders ◽  
Sandip Dhomse ◽  
...  
Keyword(s):  
Atmospheric Chemistry ◽  
Transport Model ◽  
Recent Change ◽  
Fourier Transform Spectrometer ◽  
Chemical Transport Model ◽  
Surface Level ◽  
Upper Troposphere ◽  
The Past ◽  
Ozone Depleting Substances ◽  
Chemistry Experiment

<p>Since 2004, the Atmospheric Chemistry Experiment – Fourier Transform Spectrometer (ACE-FTS) instrument has been measuring concentrations of chlorofluorocarbons (CFCs) in the stratosphere and upper troposphere and is currently the only satellite instrument that measures vertically resolved profiles of CFC‑11. Since CFCs are major ozone depleting substances, monitoring their atmospheric abundances is critical for understanding ozone layer recovery. Recent studies based solely on surface-level measurements have shown strong evidence for new CFC‑11 production, leading to an increase in CFC‑11 emissions over the past decade. In this study, the TOMCAT/SLIMCAT 3-D chemical transport model is used in order to bridge the altitude/geolocation gap between ACE-FTS measurements in the UTLS and surface level measurements. Trends in two different time periods over the ACE-FTS mission, 2004-2012 and 2013-2018, are examined to determine if the recent change in surface level CFC-11 trends is influencing UTLS concentrations. The ACE-FTS measurements show that, below ~10 km, the rate of decrease of global CFC-11 concentrations was slower during 2013-2018 (-1.2 pptv/year) than during 2004-2012 (‑2.0 pptv/year). Similar trends are observed in the model data for the same spatial/temporal regions.</p>

Impacts of stratospheric dynamical variability on total inorganic fluorine from observations and models constrained by state-of-the-art reanalyses

2020 ◽  
Author(s):  
Maxime Prignon ◽  
Peter F. Bernath ◽  
Simon Chabrillat ◽  
Martyn P. Chipperfield ◽  
Sandip S. Dhomse ◽  
...  
Keyword(s):  
Time Series ◽  
Fourier Transform ◽  
Atmospheric Chemistry ◽  
Climate Model ◽  
Transport Model ◽  
State Of The Art ◽  
Chemical Transport Model ◽  
Common Time ◽  
Good Proxy ◽  
Circulation Changes

<p>Man-made halogenated compounds emitted from the Earth’s surface ultimately reach the stratosphere where they undergo photolysis, leading to three main fluorine reservoirs: hydrogen fluoride (HF), carbonyl fluoride (COF<sub>2</sub>) and carbonyl chloride fluoride (COClF). This process is directly influenced by the strength of the mean meridional circulation of the stratosphere, the Brewer-Dobson Circulation (BDC). The BDC is projected to speed-up with the greenhouse gases induced global warming. However, studies have highlighted a multiyear variability in the strength of the BDC resulting in hemispheric asymmetries in observed and modelled trends of age of air and long-lived tracers.</p><p>Total inorganic fluorine (F<sub>y</sub>, the fluorine weighted sum of HF, COF<sub>2</sub> and COClF) is used here as a tracer of the stratospheric circulation changes. We perform an analysis and interpretation of Fourier transform infrared (FTIR) multidecadal time-series of HF and COF<sub>2</sub> from the Jungfraujoch (Switzerland, 46.55°N) and Lauder (New-Zealand, 45.03°S) stations and from the space-borne Atmospheric Chemistry Experiment - Fourier Transform Spectrometer (ACE-FTS). Indeed, the summation of HF and COF<sub>2</sub> is a very good proxy of F<sub>y </sub>as we determine, from ACE-FTS and the chemical-transport model (CTM) TOMCAT, that COClF is only accounting for less than 5% of the total F<sub>y </sub>budget.</p><p>The kinematic CTM BASCOE (Belgian assimilation system for chemical observations) is used here to assess the representation of the investigated circulation changes in four state-of-the-art meteorological reanalyses, i.e., ERA-Interim, JRA-55, MERRA and MERRA-2. We also investigate if WACCM4 (Whole Atmosphere Community Climate Model version 4) is able to reproduce these changes through a free-running simulation.</p><p>The ground-based and satellite FTIR time-series of COF<sub>2</sub> show contrasting results over their common time period (2004-2019), with a positive total column trend above the Jungfraujoch, and a non-significant (ground-based) or decreasing trend (ACE-FTS) above Lauder. We find large discrepancies between the BASCOE-CTM simulations, with MERRA-2 inducing overly large simulated F<sub>y</sub> total columns which could confirm the weaker tropical upwelling highlighted in previous age of air studies.</p>

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