scholarly journals Monte Carlo based calibration and uncertainty analysis of a coupled plant growth and hydrological model

2013 ◽  
Vol 10 (12) ◽  
pp. 19509-19540 ◽  
Author(s):  
T. Houska ◽  
S. Multsch ◽  
P. Kraft ◽  
H.-G. Frede ◽  
L. Breuer

Abstract. Computer simulations are widely used to support decision making and planning in the agriculture sector. On the one hand, many plant growth models use simplified hydrological processes and structures, e.g. by the use of a small number of soil layers or by the application of simple water flow approaches. On the other hand, in many hydrological models plant growth processes are poorly represented. Hence, fully coupled models with a high degree of process representation would allow a more detailed analysis of the dynamic behaviour of the soil–plant interface. We used the Python programming language to couple two of such high process oriented independent models and to calibrate both models simultaneously. The Catchment Modelling Framework (CMF) simulated soil hydrology based on the Richards equation and the van-Genuchten–Mualem retention curve. CMF was coupled with the Plant growth Modelling Framework (PMF), which predicts plant growth on the basis of radiation use efficiency, degree days, water shortage and dynamic root biomass allocation. The Monte Carlo based Generalised Likelihood Uncertainty Estimation (GLUE) method was applied to parameterize the coupled model and to investigate the related uncertainty of model predictions to it. Overall, 19 model parameters (4 for CMF and 15 for PMF) were analysed through 2 × 106 model runs randomly drawn from an equally distributed parameter space. Three objective functions were used to evaluate the model performance, i.e. coefficient of determination (R2), bias and model efficiency according to Nash Sutcliffe (NSE). The model was applied to three sites with different management in Muencheberg (Germany) for the simulation of winter wheat (Triticum aestivum L.) in a cross-validation experiment. Field observations for model evaluation included soil water content and the dry matters of roots, storages, stems and leaves. Best parameter sets resulted in NSE of 0.57 for the simulation of soil moisture across all three sites. The shape parameter of the retention curve n was highly constrained whilst other parameters of the retention curve showed a large equifinality. The root and storage dry matter observations were predicted with a NSE of 0.94, a low bias of −58.2 kg ha−1 and a high R2 of 0.98. Dry matters of stem and leaves were predicted with less, but still high accuracy (NSE = 0.79, bias = 221.7 kg ha−1, R2 = 0.87). We attribute this slightly poorer model performance to missing leaf senescence which is currently not implemented in PMF. The most constrained parameters for the plant growth model were the radiation-use-efficiency and the base temperature. Cross validation helped to identify deficits in the model structure, pointing out the need of including agricultural management options in the coupled model.

2014 ◽  
Vol 11 (7) ◽  
pp. 2069-2082 ◽  
Author(s):  
T. Houska ◽  
S. Multsch ◽  
P. Kraft ◽  
H.-G. Frede ◽  
L. Breuer

Abstract. Computer simulations are widely used to support decision making and planning in the agriculture sector. On the one hand, many plant growth models use simplified hydrological processes and structures – for example, by the use of a small number of soil layers or by the application of simple water flow approaches. On the other hand, in many hydrological models plant growth processes are poorly represented. Hence, fully coupled models with a high degree of process representation would allow for a more detailed analysis of the dynamic behaviour of the soil–plant interface. We coupled two of such high-process-oriented independent models and calibrated both models simultaneously. The catchment modelling framework (CMF) simulated soil hydrology based on the Richards equation and the van Genuchten–Mualem model of the soil hydraulic properties. CMF was coupled with the plant growth modelling framework (PMF), which predicts plant growth on the basis of radiation use efficiency, degree days, water shortage and dynamic root biomass allocation. The Monte Carlo-based generalized likelihood uncertainty estimation (GLUE) method was applied to parameterize the coupled model and to investigate the related uncertainty of model predictions. Overall, 19 model parameters (4 for CMF and 15 for PMF) were analysed through 2 × 106 model runs randomly drawn from a uniform distribution. The model was applied to three sites with different management in Müncheberg (Germany) for the simulation of winter wheat (Triticum aestivum L.) in a cross-validation experiment. Field observations for model evaluation included soil water content and the dry matter of roots, storages, stems and leaves. The shape parameter of the retention curve n was highly constrained, whereas other parameters of the retention curve showed a large equifinality. We attribute this slightly poorer model performance to missing leaf senescence, which is currently not implemented in PMF. The most constrained parameters for the plant growth model were the radiation-use efficiency and the base temperature. Cross validation helped to identify deficits in the model structure, pointing out the need for including agricultural management options in the coupled model.


2012 ◽  
Vol 150 (5) ◽  
pp. 595-602 ◽  
Author(s):  
E. D. GONIAS ◽  
D. M. OOSTERHUIS ◽  
A. C. BIBI

SUMMARYPlant growth regulators are widely used in cotton production to improve crop management. Previous research has demonstrated changes in crop growth, dry matter (DM) partitioning and lint yield of cotton after the application of plant growth regulators. However, no reports are available demonstrating the effect of plant growth regulators on light interception and radiation use efficiency (RUE). Field studies were conducted in Fayetteville, Arkansas, USA in 2006 and 2007. RUE was estimated for the period between the pinhead square stage (PHS) of growth and 3 weeks after first flower (FF+3) from plots receiving three applications of the nitrophenolate and mepiquat chloride with Bacillus cereus plant growth regulators (Chaperone™) at 7·19 g a.i./ha and Pix Plus® at 41·94 g a.i./ha compared with an untreated control. No differences between the Chaperone treatment and the untreated control were found in the present study. However, Pix Plus significantly reduced plant height (both 2006 and 2007) and leaf area (2007 only), and altered the canopy structure of the crop as recorded by increased values of canopy extinction coefficient. Although DM accumulation was found not to be affected by plant growth regulator treatments, RUE was significantly increased after Pix Plus application, by 33·2%. RUE was increased because less light was intercepted by the Pix Plus treatment for the same biomass production, and this is probably a result of changes in photosynthetic capacity of the leaves and changes in light distribution throughout the canopy.


2018 ◽  
Vol 90 (4) ◽  
pp. 3265-3283 ◽  
Author(s):  
FELIPE SCHWERZ ◽  
SANDRO L.P. MEDEIROS ◽  
ELVIS F. ELLI ◽  
ELDER ELOY ◽  
JAQUELINE SGARBOSSA ◽  
...  

Helia ◽  
2001 ◽  
Vol 24 (35) ◽  
pp. 101-110 ◽  
Author(s):  
S. Sridhara ◽  
T.G. Prasad

SUMMARYA field experiment was conducted at Gandhi Krishi Vignana Kendra, University of Agricultural Sciences, Bangalore to study the effect of irrigation regimens on the biomass accumulation, canopy development, light interception and radiation use efficiency of sunflower. The treatments includes irrigating the plants at 0.4, 0.6, 0.8 and 1.0 cumulative pan evaporation. The results indicated that the aboveground biomass, canopy development, radiation interception and radiation use efficiency were influenced favorably by the irrigation regimens. Irrespective of the irrigation regimen, the radiation use efficiency of sunflower increased from 15 DAS to 75 DAS and then tended to decline. The decrease in RUE after anthesis is coupled with decrease in leaf nitrogen content. In general the RUE of sunflower ranged from 0.49 g MJ-1 to 1.84 g MJ-1 at different growth stages. The light transmission within the canopy increased exponentially with plant height and the canopy extension coefficient is found to be 0.8.


Agriculture ◽  
2021 ◽  
Vol 11 (4) ◽  
pp. 351
Author(s):  
Adolfo Rosati ◽  
Damiano Marchionni ◽  
Dario Mantovani ◽  
Luigi Ponti ◽  
Franco Famiani

We quantified the photosynthetically active radiation (PAR) interception in a high-density (HD) and a super high-density (SHD) or hedgerow olive system, by measuring the PAR transmitted under the canopy along transects at increasing distance from the tree rows. Transmitted PAR was measured every minute, then cumulated over the day and the season. The frequencies of the different PAR levels occurring during the day were calculated. SHD intercepted significantly but slightly less overall PAR than HD (0.57 ± 0.002 vs. 0.62 ± 0.03 of the PAR incident above the canopy) but had a much greater spatial variability of transmitted PAR (0.21 under the tree row, up to 0.59 in the alley center), compared to HD (range: 0.34–0.43). This corresponded to greater variability in the frequencies of daily PAR values, with the more shaded positions receiving greater frequencies of low PAR values. The much lower PAR level under the tree row in SHD, compared to any position in HD, implies greater self-shading in lower-canopy layers, despite similar overall interception. Therefore, knowing overall PAR interception does not allow an understanding of differences in PAR distribution on the ground and within the canopy and their possible effects on canopy radiation use efficiency (RUE) and performance, between different architectural systems.


2016 ◽  
Vol 53 (2) ◽  
pp. 210-225 ◽  
Author(s):  
GUILHERME M. TORRES ◽  
ADRIAN KOLLER ◽  
RANDY TAYLOR ◽  
WILLIAM R. RAUN

SUMMARYSeed-oriented planting provides a manner to influence canopy structure. The purpose of this research was to improve maize light interception using seed-oriented planting to manipulate leaf azimuth across the row thereby minimizing leaf overlap. To achieve leaf azimuths oriented preferentially across the row, seeds were planted: (i) upright with caryopsis pointed down, parallel to the row (upright); and (ii) laying flat, embryo up, perpendicular to the row (flat). These treatments were compared to conventionally planted seeds with resulting random leaf azimuth distribution. Seed orientation effects were contrasted with three levels of plant population and two levels of hybrid specific canopy structures. Increased plant population resulted in greater light interception but yield tended to decrease as plant population increased. The planophile hybrid produced consistently greater yields than the erectophile hybrid. The difference between planophile and erectophile hybrids ranged from 283 to 903 kg ha−1. Overall, mean grain yield for upright and flat seed placement increased by 351 and 463 kg ha−1 compared to random seed placement. Greater cumulative intercepted photosynthetically active radiation (CIPAR) was found for oriented seeds rather than random-oriented seeds. At physiological maturity upright, flat and random-oriented seeds intercepted 555, 525 and 521 MJ m−2 of PAR, respectively. Maize yield responded positively to improved light interception and better radiation use efficiency. Under irrigated conditions, precision planting of maize increased yield by 9 to 14% compared to random-oriented seeds.


1989 ◽  
Vol 20 (1) ◽  
pp. 51-64 ◽  
Author(s):  
J.R. Kiniry ◽  
C.A. Jones ◽  
J.C. O'toole ◽  
R. Blanchet ◽  
M. Cabelguenne ◽  
...  

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