The mixture of cover crop residues induced a synergistic effect on microbial communities and an additive effect on soil organic matter priming

Author(s):  
Xin Shu ◽  
Yiran Zou ◽  
Liz Shaw ◽  
Lindsay Todman ◽  
Mark Tibbett ◽  
...  

<p>Applying cover crop residues to increase soil organic matter (SOM) is a widely used strategy to sustainably intensify agricultural systems.  However, fresh residue inputs create “hot spots” of microbial activity during decomposition which could also “prime” the decomposition of native SOM, resulting in accelerated SOM depletion and greenhouse gas emissions. Microbes exert control over SOM decomposition and stabilisation as a consequence of their carbon use efficiency (CUE), the balance between microbial catabolism and anabolism. The CUE during residue decomposition and the extent to which native SOM decomposition is primed by residue addition may depend on residue biochemical quality.  Given that cover crops may be grown in monoculture, or in species mixes with the aim of providing multiple benefits to agricultural ecosystem services, it is important to understand whether applying cover crop residues as a mixture results in a different CUE and soil carbon stock, than would be expected by observations made on the application of individual residues. We used <sup>13</sup>C labelled cover crop residues (buckwheat, clover, radish, and sunflower) to track the fate of cover crop residue-derived carbon and SOM derived carbon in treatments comprising a quaternary mixture of the residues and the average effect of the four individual residues (non-mixture) one day after residue incorporation in a laboratory microcosm experiment. The soil microbial community composition was measured by phospholipid-derived fatty acids (PLFA) fingerprint. Our results indicate that, despite all treatments receiving the same amount of plant-added carbon (1 mg C g<sup>-1</sup> soil), the total microbial biomass (<sup>12</sup>C + <sup>13</sup>C) in the treatment receiving the residue mixture was significantly greater, by 3.69 µg C g<sup>-1</sup>, than the average microbial biomass observed in the four treatments receiving individual components of the mixture. The microbial biomass in the quaternary mixture, compared to the average of the individual residue treatments, that can be attributed directly to the plant matter applied, was also significantly greater by 3.61 µg C g<sup>-1</sup>. However, there was no evidence that the mixture resulted in any more priming of native SOM than average priming observed in the individual residue treatments. The soil microbial community structure measured by analysis of similarities (ANOSM) was significantly different in the soil receiving the residue mixture, compared to the average structure of the four communities in soils receiving individual residues. Differences in the biomass of fungi and Gram-positive bacteria were responsible for the observed synergistic effect of cover crop residue mixtures on total microbial biomass and plant-derived microbial biomass; especially biomarkers 16:0, 18:1ω9, 18:2ω6 and 18:3ω3. Our study demonstrates that applying a mixture of cover crop residues initially increases soil microbial biomass to a greater extent than would be expected from applying individual components of the mixture and that this increase may occur either due to faster decomposition of the cover crop residues or greater CUE, but not due to greater priming of native SOM decomposition. Therefore, applying cover crop residue mixtures could be an effective method to increase soil microbial biomass, and ultimately soil carbon stocks in arable soils.</p>

2021 ◽  
Author(s):  
Xin Shu ◽  
Yiran Zou ◽  
Liz J Shaw ◽  
Lindsay Todman ◽  
Mark Tibbett ◽  
...  

Applying crop residues is a widely used strategy to increase soil organic matter (SOM) in arable soils because of its recorded effects on increasing microbial biomass and consequently necromass. However, fresh residue inputs could also prime the decomposition of native SOM, resulting in accelerated SOM depletion and greenhouse gas (GHG) emission. Increasing the botanical diversity of the crops grown in arable systems has been promoted to increase the delivery of multiple ecological functions, including increasing soil microbial biomass and SOM. Whether mixtures of fresh residues from different crops grown in polyculture contribute to soil carbon (C) pools to a greater extent than would be expected from applying individual residues (i.e., the mixture produces a non-additive synergistic effect) has not been systematically tested and is currently unknown. In this study, we used 13C isotope labelled cover crop residues (i.e., buckwheat, clover, radish, and sunflower) to track the fate of plant residue-derived C and C derived from the priming of SOM in treatments comprising a quaternary mixture of the residues and the average effect of the four individual residues one day after residue incorporation in a laboratory microcosm experiment. Our results indicate that, despite all treatments receiving the same amount of plant residue-derived C (1 mg C g-1 soil), the total microbial biomass in the treatment receiving the residue mixture was significantly greater, by 26% (3.69 μg C g-1), than the average microbial biomass observed in treatments receiving the four individual components of the mixture one day after applying crop residues. The greater microbial biomass C in the quaternary mixture, compared to average of the individual residue treatments, that can be attributed directly to the plant residue applied was also significantly greater, by 132% (3.61 μg C g-1). However, there was no evidence that the mixture resulted in any more priming of native SOM than average priming observed in the individual residue treatments. The soil microbial community structure, assessed using phospholipid fatty acid (PLFA) analysis, was significantly (P < 0.001) different in the soil receiving the residue mixture, compared to the average structures of the communities in soil receiving four individual residues. Differences in the biomass of fungi, general bacteria, and Gram-positive bacteria were responsible for the observed synergistic effect of crop residue mixtures on total microbial biomass and residue-derived microbial biomass, especially biomarkers 16:0, 18:2ω6 and 18:3ω3. Our study demonstrates that applying a mixture of crop residues increases soil microbial biomass to a greater extent than would be expected from applying individual residues and that this occurs either due to faster decomposition of the crop residues or greater carbon use efficiency (CUE), rather than priming the decomposition of native SOM. Therefore, growing crop polycultures (e.g., cover crop mixtures) and incorporating mixtures of the resulting crop residues into the soil could be an effective method to increase microbial biomass and ultimately C stocks in arable soils.


2021 ◽  
Author(s):  
Xin Shu ◽  
Yiran Zou ◽  
Liz J. Shaw ◽  
Lindsay Todman ◽  
Mark Tibbett ◽  
...  

AbstractCover crops have been widely used in agroecosystems to improve soil fertility and environmental sustainability. The decomposition of cover crop residues can have further effects on belowground communities and their activity, which is important for a series of soil functions (e.g., nutrient cycling and organic matter decomposition). We tested the effect of plant residues from a range of cover crop species on soil microbial activity and community assemblage. We predicted that cover crop residues would alter the soil microbial community and that a greater diversity of residues would enhance microbial decomposition. In an incubation study, we assessed the effect of crop residue diversity on microbial activity (soil respiration) and its consequent effects on microbial community composition (PLFA). We used either a biodiverse mixture of four cover crop residues (buckwheat, clover, sunflower and radish) or an equal mass of the residues of each of the individual species. The diverse mixture of cover crop residues had a significantly (P < 0.05) greater soil respiration rate, by 57.61 µg C g−1 h−1, than the average of the four individual residues, but did not have a significantly different soil microbial biomass or microbial community structure. This finding could be attributed to a greater diversity of organic resources increasing the number biochemical niches, and hence activating dormant microbial communities to increase microbial activity without affecting microbial biomass or community composition. Greater respiration from similar microbial biomasses suggests that microbial activity might be more efficient after a more diverse substrate input. This study confirms the positive impact of cover crop residues on soil microbial biomass and activity and highlights that mixtures of cover crop residues may deliver enhanced soil functions beyond the sum of individual cover crop residues.


2020 ◽  
Author(s):  
Xin Shu ◽  
Yiran Zou ◽  
Liz Shaw ◽  
Lindsay Todman ◽  
Mark Tibbett ◽  
...  

&lt;p&gt;Cover crops are a contemporary tool to sustainably manage agricultural soils by boosting fertility, suppressing weeds and disease, and benefiting cash crop yields, thus securing future food supply. Due to the different chemical composition of crop residues from different plant families, we hypothesised that a mixture of cover crop residues may have a greater potential to improve soil health than the sum of the parts. Our experiment focused on the impact of four cover crops (clover, sunflower, radish and buckwheat) and their quaternary mixture on soil respiration and the soil microbial community in an 84-day microcosm experiment. On average adding cover crop residues significantly (P &lt; 0.001) increased soil respiration from 29 to 343 &amp;#181;g C g&lt;sup&gt;-1&lt;/sup&gt; h&lt;sup&gt;-1&lt;/sup&gt; and microbial biomass from 18 to 60 &amp;#181;g C g&lt;sup&gt;-1&lt;/sup&gt;, compared to the unamended control during 84 days&amp;#8217; incubation. Cover crop addition resulted in a significant (P &lt; 0.001) alteration of the soil microbial community structure compared to that of the control. The quaternary mixture of cover crop residues significantly (P = 0.011) increased soil respiration rate by 23.79 &amp;#181;g C g&lt;sup&gt;-1&lt;/sup&gt; h&lt;sup&gt;-1&lt;/sup&gt; during the period 30 to 84 days after residue incorporation, compared to the average of the four individual residues. However, no significant difference in the size of the microbial biomass was found between the mixture and the average of the four individuals, indicating the mixture may invest resources which transit dormant microbial species into a metabolically active state and thus boost microbial respiration. Analysis of similarity of microbial community composition (ANOSIM) demonstrated the mixture significantly (P = 0.001) shifted microbial community structure away from buckwheat (R = 0.847), clover (R = 0.688), radish (R = 0.285) and sunflower (R = 0.785), respectively. This implies cover crop residues provide a niche specialization and differentiation on a selection of microbial communities that favour certain plant compounds. While applying cover crop residues has positive impacts on soil function, we found that applying a mixture of cover crop residues may provide greater potential to select for microorganisms or activate dormant microbial species which result in higher soil function. The outcome of this study will help seed suppliers to design, and farmers to select, novel cover crop mixtures which enhance soil function synergistically, leading to a greater potential to sustainably improve soil health.&lt;/p&gt;


2004 ◽  
Vol 84 (4) ◽  
pp. 411-419 ◽  
Author(s):  
N. Z. Lupwayi ◽  
G. W. Clayton ◽  
J. T. O’Donovan ◽  
K. N. Harker ◽  
T. K. Turkington ◽  
...  

Field experiments were conducted to correlate decomposition of red clover (Trifolium pratense) green manure (GM), field pea (Pisum sativum), canola (Brassica rapa) and wheat (Triticum aestivum) residues, and soil organic C (SOC), under zero tillage and conventional tillage, with soil microbial biomass C (MBC), bacterial functional diversity and microbial activity (CO2 evolution). A greenhouse experiment was also conducted to relate crop residue quality to soil microbial characteristics. Zero tillage increas ed MBC only in the 0- to 5-cm soil layer. Soil MBC decreased more with soil depth than either microbial diversity or total SOC. Legume GM residues induced greater initial CO2 evolution than the other residues. This means that results that do not include the initial flush of microbial activity, e.g., by sampling only in the season(s) following residue placement, probably underestimate gas evolution from legume crop residues. Residue N, P and K contents were positively correlated with microbial functional diversity and activity, which were positively correlated with crop residue decomposition. Therefore, microbial functional diversity and activity were good indicators of microbial decomposition processes. Residue C/N and C/P ratios (i.e., high C content) were positively correlated with MBC, which was positively correlated with SOC. Therefore, soil MBC was a good indicator of soil quality (soil organic matter content). Key words: Biological soil quality, crop residues, crop rotation, microbial activity, microbial biomass, microbial diversity


2011 ◽  
Vol 35 (6) ◽  
pp. 1873-1883 ◽  
Author(s):  
Elcio Liborio Balota ◽  
Pedro Antonio Martins Auler

To mitigate soil erosion and enhance soil fertility in orange plantations, the permanent protection of the inter-rows by cover species has been suggested. The objective of this study was to evaluate alterations in the microbial biomass, due to different soil tillage systems and intercropped cover species between rows of orange trees. The soil of the experimental area previously used as pasture (Brachiaria humidicola) was an Ultisol (Typic Paleudult) originating from Caiuá sandstone in the northwestern part of the State of Paraná, Brazil. Two soil tillage systems were evaluated: conventional tillage (CT) in the entire area and strip tillage (ST) (strip width 2 m), in combination with different ground cover management systems. The citrus cultivar 'Pera' orange (Citrus sinensis) grafted onto 'Rangpur' lime rootstock was used. Soil samples were collected after five years of treatment from a depth of 0-15 cm, under the tree canopy and in the inter-row, in the following treatments: (1) CT and an annual cover crop with the leguminous species Calopogonium mucunoides; (2) CT and a perennial cover crop with the leguminous peanut Arachis pintoi; (3) CT and an evergreen cover crop with Bahiagrass Paspalum notatum; (4) CT and a cover crop with spontaneous Brachiaria humidicola grass vegetation; and (5) ST and maintenance of the remaining grass (pasture) of Brachiaria humidicola. Soil tillage and the different cover species influenced the microbial biomass, both under the tree canopy and in the inter-row. The cultivation of brachiaria increased C and N in the microbial biomass, while bahiagrass increased P in the microbial biomass. The soil microbial biomass was enriched in N and P by the presence of ground cover species and according to the soil P content. The grass species increased C, N and P in the soil microbial biomass from the inter-row more than leguminous species.


2015 ◽  
Vol 154 (6) ◽  
pp. 1051-1061 ◽  
Author(s):  
B. ZHANG ◽  
Q. GAO ◽  
S. XU ◽  
L. MA ◽  
C. TIAN

SUMMARYA field study was carried out to examine the response of microbial communities of a clay loam soil to long-term (30 years) effects of residue return and fertilization. The experimental design was a split-plot arrangement of treatments, consisting of three residue treatments (crop residues returned at rates of 0, 2500 and 5000 kg/ha) in combination with eight fertilization treatments (control, no fertilizer; N, mineral nitrogen (N) fertilizer; P, mineral phosphorus (P) fertilizer; K, mineral potassium (K) fertilizer; NP, mineral NP fertilizer; NK, mineral NK fertilizer; PK, mineral PK fertilizer; and NPK, mineral NPK fertilizer). Soil microbial communities were characterized by phospholipid fatty acid analysis. Results indicated that the more crop residues were returned, the lower ratio of fungi to bacteria was observed. However, soil microbial biomass was only found to be significantly higher in plots with residues returned at a rate of 5000 kg/ha but not 2500 kg/ha. This suggested there was a threshold for microbial biomass to increase under residue return for the clay loam soil studied. The fertilization effect on soil microbial biomass gradually decreased with increases in the amount of crop residues returned. A significant composition change was observed under N fertilization. Structural equation modelling indicated that soil microbial communities were influenced directly by residue return and indirectly by residue-induced change in ratio of carbon to N and fertilization-induced change in soil pH.


HortScience ◽  
2004 ◽  
Vol 39 (4) ◽  
pp. 871A-871
Author(s):  
Mohan Selvaraj* ◽  
Mathieu Ngouajio

The inclusion of cover crops into cropping systems may influence soil microbial activity which is crucial to sustained crop production. A study was conducted to measure short term effects of summer and winter cover crops on soil microbial biomass carbon (MBC) in a cucumber-tomato rotation system. The experiment was established in Summer 2002 as a factorial of summer cover crops (planted either as fallow or after harvest of cucumbers) and winter cover crops (planted in September). The design was a split-block with four replications. The main plot factor was summer cover crop and consisted of five treatments; sorghum sudangrass fallow (SGF), cowpea fallow (CPF), sorghum sudangrass after cucumber (SGC), cowpea after cucumber (CPC) and bareground fallow (BGF). The sub-plot factor was winter cover crop and consisted of three treatments including cereal rye (CR), hairy vetch (HV) and bareground (BG). In spring of 2003, soil samples were collected in each treatment at 30 days before (30 DBI), 2 days after (2 DAI) and 30 days after (30 DAI) cover crop incorporation. MBC was measured using the chloroform fumigation-incubation method. Both summer and winter cover crops affected soil microbial activity. MBC in the summer cover crop treatments at 30 DBI was 47.7, 51.4, 49.2, 43.7 and 42.5 μg·g-1 soil for SGF, CPF, SGC, CPC and BGF, respectively. At 30 DAI, 113.1, 88.9, 138.5, 105.6, and 109.3 μg·g-1 soil was obtained in SGF, CPF, SGC, CPC, and BGF plots, respectively. Soil MBC was similar at 2 DAI in the summer cover crop treatments. Among winter treatments MBC was similar at 30 DBI and 30 DAI, but significant at 2 DAI with values of 62.8, 53.3, 59.3 μg·g-1 soil for CR, BG, and HV, respectively.


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