scholarly journals A representation of the phosphorus cycle for ORCHIDEE (revision 4520)

2017 ◽  
Vol 10 (10) ◽  
pp. 3745-3770 ◽  
Author(s):  
Daniel S. Goll ◽  
Nicolas Vuichard ◽  
Fabienne Maignan ◽  
Albert Jornet-Puig ◽  
Jordi Sardans ◽  
...  
Keyword(s):  
Primary Productivity ◽  
Land Surface ◽  
Net Primary Productivity ◽  
Nutrient Content ◽  
Soil Development ◽  
Nutrient Concentrations ◽  
Surface Model ◽  
Phosphorus Cycle ◽  
Area Index ◽  
Leaf Level

Abstract. Land surface models rarely incorporate the terrestrial phosphorus cycle and its interactions with the carbon cycle, despite the extensive scientific debate about the importance of nitrogen and phosphorus supply for future land carbon uptake. We describe a representation of the terrestrial phosphorus cycle for the ORCHIDEE land surface model, and evaluate it with data from nutrient manipulation experiments along a soil formation chronosequence in Hawaii. ORCHIDEE accounts for the influence of the nutritional state of vegetation on tissue nutrient concentrations, photosynthesis, plant growth, biomass allocation, biochemical (phosphatase-mediated) mineralization, and biological nitrogen fixation. Changes in the nutrient content (quality) of litter affect the carbon use efficiency of decomposition and in return the nutrient availability to vegetation. The model explicitly accounts for root zone depletion of phosphorus as a function of root phosphorus uptake and phosphorus transport from the soil to the root surface. The model captures the observed differences in the foliage stoichiometry of vegetation between an early (300-year) and a late (4.1 Myr) stage of soil development. The contrasting sensitivities of net primary productivity to the addition of either nitrogen, phosphorus, or both among sites are in general reproduced by the model. As observed, the model simulates a preferential stimulation of leaf level productivity when nitrogen stress is alleviated, while leaf level productivity and leaf area index are stimulated equally when phosphorus stress is alleviated. The nutrient use efficiencies in the model are lower than observed primarily due to biases in the nutrient content and turnover of woody biomass. We conclude that ORCHIDEE is able to reproduce the shift from nitrogen to phosphorus limited net primary productivity along the soil development chronosequence, as well as the contrasting responses of net primary productivity to nutrient addition.

scholarly journals A representation of the phosphorus cycle for ORCHIDEE (revision 3985)

2017 ◽  
Author(s):  
Daniel S. Goll ◽  
Nicolas Vuichard ◽  
Fabienne Maignan ◽  
Albert Jornet-Puig ◽  
Jordi Sardans ◽  
...  
Keyword(s):  
Primary Productivity ◽  
Land Surface ◽  
Net Primary Productivity ◽  
Nutrient Content ◽  
Soil Development ◽  
Nutrient Concentrations ◽  
Surface Model ◽  
Phosphorus Cycle ◽  
Area Index ◽  
Leaf Level

Abstract. Land surface models rarely incorporate the terrestrial phosphorus cycle and its interactions with the carbon cycle, despite the extensive scientific debate about the importance of nitrogen and phosphorus supply for future land carbon uptake. We describe a representation of the terrestrial phosphorus cycle for the land surface model ORCHIDEE, and evaluate it with data from nutrient manipulation experiments along a soil formation chronosequence in Hawaii. ORCHIDEE accounts for influence of nutritional state of vegetation on tissue nutrient concentrations, photosynthesis, plant growth, biomass allocation, biochemical (phosphatase-mediated) mineralization and biological nitrogen fixation. Changes in nutrient content (quality) of litter affect the carbon use efficiency of decomposition and in return the nutrient availability to vegetation. The model explicitly accounts for root zone depletion of phosphorus as a function of root phosphorus uptake and phosphorus transport from soil to the root surface. The model captures the observed differences in the foliage stoichiometry of vegetation between an early (300yr) and a late stage (4.1 Myr) of soil development. The contrasting sensitivities of net primary productivity to the addition of either nitrogen, phosphorus or both among sites are in general reproduced by the model. As observed, the model simulates a preferential stimulation of leaf level productivity when nitrogen stress is alleviated, while leaf level productivity and leaf area index are stimulated equally when phosphorus stress is alleviated. The nutrient use efficiencies in the model are lower as observed primarily due to biases in the nutrient content and turnover of woody biomass. We conclude that ORCHIDEE is able to reproduce the shift from nitrogen to phosphorus limited net primary productivity along the soil development chronosequence, as well as the contrasting responses of net primary productivity to nutrient addition.

scholarly journals A process-based <i>Sphagnum</i> plant-functional-type model for implementation in the TRIFFID Dynamic Global Vegetation Model

2019 ◽  
Author(s):  
Richard Coppell ◽  
Emanuel Gloor ◽  
Joseph Holden
Keyword(s):  
Water Table ◽  
Primary Productivity ◽  
Photosynthetically Active Radiation ◽  
Land Surface ◽  
Net Primary Productivity ◽  
Type Model ◽  
Surface Model ◽  
Dynamic Global Vegetation Model ◽  
Active Radiation ◽  
Global Vegetation

Abstract. Peatlands are important carbon stores and Sphagnum moss represents a critical peatland genus contributing to carbon exchange and storage. However, gas fluxes in Sphagnum-dominated systems are poorly represented in Dynamic Global Vegetation Models (DGVMs) which simulate, via incorporation of Plant Functional Types (PFTs), biogeochemical and energy fluxes between vegetation, the land surface and the atmosphere. Mechanisms characterised by PFTs within DGVMs include photosynthesis, respiration and competition and, in more recent DGVMs, sub-daily gas-exchange processes regulated by leaf 10 stomata. However, Sphagnum, like all mosses, are non-vascular plants and do not exhibit stomatal regulation. In order to achieve a level of process detail consistent with existing vascular vegetation PFTs within DGVMs, this paper describes a new process-based non-vascular-PFT model that is implemented within the TRIFFID DGVM used by the JULES land surface model. The new PFT model was tested against extant published field and laboratory studies of peat assemblage-net primary productivity, assemblage-gross primary productivity, assemblage respiration, water-table position, incoming 15 photosynthetically active radiation, temperature, and canopy dark respiration. The PFT model’s parameters were roughly tuned and the PFT model easily produced curves of the correct shape for peat assemblage-net primary productivity against water-table position, incoming photosynthetically active radiation and temperature, suggesting that it replicates the internal productivity mechanism of Sphagnum for the first time. Minor modifications should also allow it to be used across a range of other bryophytes enabling this non-vascular PFT model to have enhanced functionality.

scholarly journals Description and Validation of the Simple, Efficient, Dynamic, Global, Ecological Simulator (SEDGES v.1.0)

2017 ◽  
Author(s):  
Pablo Paiewonsky ◽  
Oliver Elison Timm
Keyword(s):  
Primary Productivity ◽  
Land Surface ◽  
Large Scale ◽  
Net Primary Productivity ◽  
Climate Model ◽  
Hydrological Cycle ◽  
Bare Soil ◽  
Relative Advantage ◽  
Coupling Scheme ◽  
Area Index

Abstract. In this paper, we present a simple vegetation model whose primary intended use is auxiliary to the land-atmosphere coupling scheme of a climate model, particularly one of intermediate complexity. The model formulations and their derivations are presented here, in detail. The model includes some realistic and useful features for its level of complexity, including a photosynthetic dependency on light, full coupling of photosynthesis and transpiration through an interactive canopy resistance, and a soil organic carbon dependence for bare soil albedo. We evaluate the model's performance by running it using a simple land surface scheme that is driven by reanalysis data. The evaluation against observational data includes net primary productivity, leaf area index, surface albedo, and diagnosed variables relevant for the closure of the hydrological cycle. In this set up, we find that the model gives an adequate to good simulation of basic large-scale ecological and hydrological variables. Of the variables analyzed in this paper, gross primary productivity is particularly well simulated. The results also reveal the current limitations of the model. The most significant deficiency is the excessive simulation of evapotranspiration in mid- to high northern latitudes during their winter to spring transition. The model has relative advantage in situations that require some combination of computational efficiency, model transparency and tractability, and the simulation of the large scale vegetation and land surface characteristics under non-present day conditions.

scholarly journals Description and validation of the Simple, Efficient, Dynamic, Global, Ecological Simulator (SEDGES v.1.0)

2018 ◽  
Vol 11 (3) ◽  
pp. 861-901
Author(s):  
Pablo Paiewonsky ◽  
Oliver Elison Timm
Keyword(s):  
Primary Productivity ◽  
Land Surface ◽  
Large Scale ◽  
Net Primary Productivity ◽  
Climate Model ◽  
Hydrological Cycle ◽  
Relative Advantage ◽  
Coupling Scheme ◽  
Dynamic Global Vegetation Model ◽  
Area Index

Abstract. In this paper, we present a simple dynamic global vegetation model whose primary intended use is auxiliary to the land–atmosphere coupling scheme of a climate model, particularly one of intermediate complexity. The model simulates and provides important ecological-only variables but also some hydrological and surface energy variables that are typically either simulated by land surface schemes or else used as boundary data input for these schemes. The model formulations and their derivations are presented here, in detail. The model includes some realistic and useful features for its level of complexity, including a photosynthetic dependency on light, full coupling of photosynthesis and transpiration through an interactive canopy resistance, and a soil organic carbon dependence for bare-soil albedo. We evaluate the model's performance by running it as part of a simple land surface scheme that is driven by reanalysis data. The evaluation against observational data includes net primary productivity, leaf area index, surface albedo, and diagnosed variables relevant for the closure of the hydrological cycle. In this setup, we find that the model gives an adequate to good simulation of basic large-scale ecological and hydrological variables. Of the variables analyzed in this paper, gross primary productivity is particularly well simulated. The results also reveal the current limitations of the model. The most significant deficiency is the excessive simulation of evapotranspiration in mid- to high northern latitudes during their winter to spring transition. The model has a relative advantage in situations that require some combination of computational efficiency, model transparency and tractability, and the simulation of the large-scale vegetation and land surface characteristics under non-present-day conditions.

scholarly journals JULES-CN: a coupled terrestrial Carbon-Nitrogen Scheme (JULES vn5.1)

2020 ◽  
Author(s):  
Andrew J. Wiltshire ◽  
Eleanor J. Burke ◽  
Sarah E. Chadburn ◽  
Chris D. Jones ◽  
Peter M. Cox ◽  
...  
Keyword(s):  
Carbon Cycle ◽  
Nitrogen Cycle ◽  
Primary Productivity ◽  
Land Surface ◽  
Net Primary Productivity ◽  
Biogeochemical Model ◽  
Surface Model ◽  
Earth System ◽  
Terrestrial Carbon ◽  
The Impact

Abstract. Understanding future changes in the terrestrial carbon cycle is important for reliable projections of climate change and impacts on ecosystems. It is known that nitrogen could limit plants' response to increased atmospheric carbon dioxide and is therefore important to include in Earth System Models. Here we present the implementation of the terrestrial nitrogen cycle in the JULES land surface model (JULES-CN). Two versions are discussed – the one implemented within the UK Earth System Model (UKESM1) which has a bulk soil biogeochemical model and a development version which resolves the soil biogeochemistry with depth. The nitrogen cycle is based on the existing carbon cycle in the model. It represents all the key terrestrial nitrogen processes in an efficient way. Biological fixation and nitrogen deposition are external inputs, and loss occurs via leaching and a bulk gas loss parameterisation. Nutrient limitation reduces carbon-use efficiency (CUE – ratio of net to gross primary productivity) and can slow soil decomposition. We show that ecosystem level limitation of net primary productivity by nitrogen is consistent with observational estimates and that simulated carbon and nitrogen pools and fluxes are comparable to the limited available observations. The impact of N limitation is most pronounced in northern mid-latitudes. The introduction of a nitrogen cycle improves the representation of interannual variability of global net ecosystem exchange which was much too pronounced in the carbon cycle only versions of JULES (JULES-C). It also reduces the CUE and alters its response over the twentieth century and limits the CO2-fertilisation effect, such that the simulated current day land carbon sink is reduced by about 0.5 Pg C yr−1. The inclusion of a prognostic land nitrogen scheme marks a step forward in functionality and realism for the JULES and UKESM models.

scholarly journals Sequential assimilation of satellite-derived vegetation and soil moisture products using SURFEX_v8.0: LDAS-Monde assessment over the Euro-Mediterranean area

2017 ◽  
Author(s):  
Clément Albergel ◽  
Simon Munier ◽  
Delphine Jennifer Leroux ◽  
Hélène Dewaele ◽  
David Fairbairn ◽  
...  
Keyword(s):  
Soil Moisture ◽  
Land Surface ◽  
Gross Primary Production ◽  
Mediterranean Area ◽  
Surface Model ◽  
Strong Impact ◽  
Control Variables ◽  
Area Index ◽  
Model Control ◽  
Global Land

Abstract. In this study, a global Land Data Assimilation system (LDAS-Monde) is tested over Europe and the Mediterranean basin to increase monitoring accuracy for land surface variables. LDAS-Monde is able to ingest information from satellite-derived surface Soil Moisture (SM) and Leaf Area Index (LAI) observations to constrain the Interactions between Soil, Biosphere, and Atmosphere (ISBA) land surface model (LSM) coupled with the CNRM (Centre National de Recherches Météorologiques) version of the Total Runoff Integrating Pathways (ISBA-CTRIP) continental hydrological system. It makes use of the CO2-responsive version of ISBA which models leaf-scale physiological processes and plant growth. Transfer of water and heat in the soil rely on a multilayer diffusion scheme. Surface SM and LAI observations are assimilated using a simplified extended Kalman filter (SEKF), which uses finite differences from perturbed simulations to generate flow-dependence between the observations and the model control variables. The latter include LAI and seven layers of soil (from 1 cm to 100 cm depth). A sensitivity test of the Jacobians over 2000–2012 exhibits effects related to both depth and season. It also suggests that observations of both LAI and surface SM have an impact on the different control variables. From the assimilation of surface SM, the LDAS is more effective in modifying soil-moisture from the top layers of soil as model sensitivity to surface SM decreases with depth and has almost no impact from 60 cm downwards. From the assimilation of LAI, a strong impact on LAI itself is found. The LAI assimilation impact is more pronounced in SM layers that contain the highest fraction of roots (from 10 cm to 60 cm). The assimilation is more efficient in summer and autumn than in winter and spring. Assimilation impact shows that the LDAS works well constraining the model to the observations and that stronger corrections are applied to LAI than to SM. The assimilation impact's evaluation is successfully carried out using (i) agricultural statistics over France, (ii) river discharge observations, (iii) satellite-derived estimates of land evapotranspiration from the Global Land Evaporation Amsterdam Model (GLEAM) project and (iv) spatially gridded observations based estimates of up-scaled gross primary production and evapotranspiration from the FLUXNET network. Comparisons with those four datasets highlight neutral to highly positive improvement.

scholarly journals Evaluation of MEGAN-CLM parameter sensitivity to predictions of isoprene emissions from an Amazonian rainforest

2014 ◽  
Vol 14 (17) ◽  
pp. 23995-24041 ◽  
Author(s):  
J. A. Holm ◽  
K. Jardine ◽  
A. B. Guenther ◽  
J. Q. Chambers ◽  
E. Tribuzy
Keyword(s):  
Land Surface ◽  
Field Measurements ◽  
Leaf Temperature ◽  
Surface Model ◽  
Amazon Forest ◽  
Biophysical Parameters ◽  
Area Index ◽  
Central Amazon ◽  
Community Land Model ◽  
Environmental Controls

Abstract. Tropical trees are known to be large emitters of biogenic volatile organic compounds (BVOC), accounting for up to 75% of the global isoprene budget. Once in the atmosphere, these compounds influence multiple processes associated with air quality and climate. However, uncertainty in biogenic emissions is two-fold, (1) the environmental controls over isoprene emissions from tropical forests remain highly uncertain; and (2) our ability to accurately represent these environmental controls within models is lacking. This study evaluated the biophysical parameters that drive the global Model of Emissions of Gases and Aerosols from Nature (MEGAN) embedded in a biogeochemistry land surface model, the Community Land Model (CLM), with a focus on isoprene emissions from an Amazonian forest. Upon evaluating the sensitivity of 19 parameters in CLM that currently influence isoprene emissions by using a Monte Carlo analysis, up to 61% of the uncertainty in mean isoprene emissions was caused by the uncertainty in the parameters related to leaf temperature. The eight parameters associated with photosynthetic active radiation (PAR) contributed in total to only 15% of the uncertainty in mean isoprene emissions. Leaf temperature was strongly correlated with isoprene emission activity (R2 = 0.89). However, when compared to field measurements in the Central Amazon, CLM failed to capture the upper 10–14 °C of leaf temperatures throughout the year (i.e., failed to represent ~32 to 46 °C), and the spread observed in field measurements was not representative in CLM. This is an important parameter to accurately simulate due to the non-linear response of emissions to temperature. MEGAN-CLM 4.0 overestimated isoprene emissions by 60% for a Central Amazon forest (5.7 mg m−2 h−1 vs. 3.6 mg m−2 h−1), but due to reductions in leaf area index (LAI) by 28% in MEGAN-CLM 4.5 isoprene emissions were within 7% of observed data (3.8 mg m−2 h−1). When a slight adjustment to leaf temperature was made to match observations, isoprene emissions increased 24%, up to 4.8 mg m−2 h−1. Air temperatures are very likely to increase in tropical regions as a result of human induced climate change. Reducing the uncertainty of leaf temperature in BVOC algorithms, as well as improving the accuracy of replicating leaf temperature output in land surface models is warranted in order to improve estimations of tropical BVOC emissions.

scholarly journals Integration of nitrogen dynamics into the Noah-MP land model v1.1 for climate and environmental predictions

2015 ◽  
Vol 8 (5) ◽  
pp. 4113-4153 ◽  
Author(s):  
X. Cai ◽  
Z.-L. Yang ◽  
J. B. Fisher ◽  
X. Zhang ◽  
M. Barlage ◽  
...  
Keyword(s):  
Land Surface ◽  
Climate Models ◽  
Net Primary Productivity ◽  
Assessment Tool ◽  
Land Surface Model ◽  
Coupled Model ◽  
Nitrogen Dynamics ◽  
Surface Model ◽  
Meteorological Model ◽  
Environmental Models

Abstract. Climate and terrestrial biosphere models consider nitrogen an important factor in limiting plant carbon uptake, while operational environmental models view nitrogen as the leading pollutant causing eutrophication in water bodies. The community Noah land surface model with multi-parameterization options (Noah-MP) is unique in that it is the next generation land surface model for the Weather Research and Forecasting meteorological model and for the operational weather/climate models in the National Centers for Environmental Prediction. In this study, we add capability to Noah-MP to simulate nitrogen dynamics by coupling the Fixation and Uptake of Nitrogen (FUN) plant model and the Soil and Water Assessment Tool (SWAT) soil nitrogen dynamics. This incorporates FUN's state-of-the-art concept of carbon cost theory and SWAT's strength in representing the impacts of agricultural management on the nitrogen cycle. Parameterizations for direct root and mycorrhizal-associated nitrogen uptake, leaf retranslocation, and symbiotic biological nitrogen fixation are employed from FUN, while parameterizations for nitrogen mineralization, nitrification, immobilization, volatilization, atmospheric deposition, and leaching are based on SWAT. The coupled model is then evaluated at the Kellogg Biological Station – a Long-term Ecological Research site within the U.S. Corn Belt. Results show that the model performs well in capturing the major nitrogen state/flux variables (e.g., soil nitrate and nitrate leaching). Furthermore, the addition of nitrogen dynamics improves the modeling of the carbon and water cycles (e.g., net primary productivity and evapotranspiration). The model improvement is expected to advance the capability of Noah-MP to simultaneously predict weather and water quality in fully coupled Earth system models.

scholarly journals An Improved Canopy Integration Scheme for a Land Surface Model with Prognostic Canopy Structure

2007 ◽  
Vol 20 (15) ◽  
pp. 3902-3923 ◽  
Author(s):  
Peter E. Thornton ◽  
Niklaus E. Zimmermann
Keyword(s):  
Leaf Area ◽  
Specific Leaf Area ◽  
Land Surface ◽  
Temperate Climate ◽  
Integration Scheme ◽  
Surface Model ◽  
Area Index ◽  
Climate System Model ◽  
Community Land Model ◽  
Canopy Model

Abstract A new logical framework relating the structural and functional characteristics of a vegetation canopy is presented, based on the hypothesis that the ratio of leaf area to leaf mass (specific leaf area) varies linearly with overlying leaf area index within the canopy. Measurements of vertical gradients in specific leaf area and leaf carbon:nitrogen ratio for five species (two deciduous and three evergreen) in a temperate climate support this hypothesis. This new logic is combined with a two-leaf (sunlit and shaded) canopy model to arrive at a new canopy integration scheme for use in the land surface component of a climate system model. An inconsistency in the released model radiation code is identified and corrected. Also introduced here is a prognostic canopy model with coupled carbon and nitrogen cycle dynamics. The new scheme is implemented within the Community Land Model and tested in both diagnostic and prognostic canopy modes. The new scheme increases global gross primary production by 66% (from 65 to 108 Pg carbon yr−1) for diagnostic model simulations driven with reanalysis surface weather, with similar results (117 PgC yr−1) for the new prognostic model. Comparison of model predictions to global syntheses of observations shows generally good agreement for net primary productivity (NPP) across a range of vegetation types, with likely underestimation of NPP in tundra and larch communities. Vegetation carbon stocks are higher than observed in forest systems, but the ranking of stocks by vegetation type is accurately captured.

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