scholarly journals Oxygen isotope exchange between water and carbon dioxide in soils is controlled by pH, nitrate and microbial biomass through links to carbonic anhydrase activity

SOIL ◽  
2021 ◽  
Vol 7 (1) ◽  
pp. 145-159
Author(s):  
Sam P. Jones ◽  
Aurore Kaisermann ◽  
Jérôme Ogée ◽  
Steven Wohl ◽  
Alexander W. Cheesman ◽  
...  

Abstract. The oxygen isotope composition of atmospheric carbon dioxide (CO2) is intimately linked to large-scale variations in the cycling of CO2 and water across the Earth's surface. Understanding the role the biosphere plays in modifying the oxygen isotope composition of atmospheric CO2 is particularly important as this isotopic tracer has the potential to constrain estimates of important processes such as gross primary production at large scales. However, constraining the atmospheric mass budget for the oxygen isotope composition of CO2 also requires that we understand better the contribution of soil communities and how they influence the rate of oxygen isotope exchange between soil water and CO2 (kiso) across a wide range of soil types and climatic zones. As the carbonic anhydrases (CAs) group of enzymes enhances the rate of CO2 hydration within the water-filled pore spaces of soils, it is important to develop understanding of how environmental drivers can impact kiso through changes in their activity. Here we estimate kiso and measure associated soil properties in laboratory incubation experiments using 44 soils sampled from sites across western Eurasia and north-eastern Australia. Observed values for kiso always exceeded theoretically derived uncatalysed rates, indicating a significant influence of CAs on the variability of kiso across the soils studied. We identify soil pH as the principal source of variation, with greater kiso under alkaline conditions suggesting that shifts in microbial community composition or intra–extra-cellular dissolved inorganic carbon gradients induce the expression of more or higher activity forms of CAs. We also show for the first time in soils that the presence of nitrate under naturally acidic conditions reduces kiso, potentially reflecting a direct or indirect inhibition of CAs. This effect appears to be supported by a supplementary ammonium nitrate fertilisation experiment conducted on a subset of the soils. Greater microbial biomass also increased kiso under a given set of chemical conditions, highlighting a putative link between CA expression and the abundance of soil microbes. These data provide the most extensive analysis of spatial variations in soil kiso to date and indicate the key soil trait datasets required to predict variations in kiso at large spatial scales, a necessary next step to constrain the important role of soil communities in the atmospheric mass budget of the oxygen isotope composition of CO2.

2020 ◽  
Author(s):  
Sam P. Jones ◽  
Aurore Kaisermann ◽  
Jerome Ogee ◽  
Steven Wohl ◽  
Alexander W. Cheesman ◽  
...  

Abstract. The oxygen isotope composition (δ18O) of atmospheric carbon dioxide (CO2) can be used to estimate gross primary production at the ecosystem-scale and above. Understanding how and why the rate of oxygen isotope exchange between soil water and CO2 (kiso) varies can help to reduce uncertainty in the retrieval of such estimates. The expression and activity of carbonic anhydrases in soils are important drivers of variations in kiso. Here we estimate kiso and measure associated soil properties in laboratory incubation experiments using 44 soils sampled from sites across western Eurasia and northeastern Australia. Observed kiso exceeded theoretical uncatalysed rates indicating the significant influence of carbonic anhydrases on the variability observed among the soils studied. We identify soil pH as the principal source of variation, with greater kiso under alkaline conditions suggesting that shifts in microbial community composition or intra-extra cellular dissolved inorganic carbon gradients induce the expression of more or higher activity forms of carbonic anhydrases. We also show for the first time in soils that the presence of nitrate under acidic conditions reduces kiso, potentially reflecting the direct or indirect inhibition of carbonic anhydrases. This effect was confirmed by a supplementary ammonium nitrate fertilisation experiment conducted on a subset of the soils. Future changes in atmospheric nitrogen deposition or land-use may thus influence carbonic anhydrase activity. Greater microbial biomass also increased kiso under a given set of chemical conditions likely highlighting the ubiquity of carbonic anhydrase expression by soil microbial communities. These data provide the most extensive analysis of spatial variations in soil kiso to date and indicate key controls required to predict variations in kiso at the scales needed to improve efforts to constrain gross primary productivity using the δ18O of atmospheric CO2.


2018 ◽  
Vol 115 (26) ◽  
pp. 6602-6607 ◽  
Author(s):  
Uri Ryb ◽  
John M. Eiler

The18O/16O of calcite fossils increased by ∼8‰ between the Cambrian and present. It has long been controversial whether this change reflects evolution in the δ18O of seawater, or a decrease in ocean temperatures, or greater extents of diagenesis of older strata. Here, we present measurements of the oxygen and ‟clumped” isotope compositions of Phanerozoic dolomites and compare these data with published oxygen isotope studies of carbonate rocks. We show that the δ18O values of dolomites and calcite fossils of similar age overlap one another, suggesting they are controlled by similar processes. Clumped isotope measurements of Cambrian to Pleistocene dolomites imply crystallization temperatures of 15–158 °C and parent waters having δ18OVSMOWvalues from −2 to +12‰. These data are consistent with dolomitization through sediment/rock reaction with seawater and diagenetically modified seawater, over timescales of 100 My, and suggest that, like dolomite, temporal variations of the calcite fossil δ18O record are largely driven by diagenetic alteration. We find no evidence that Phanerozoic seawater was significantly lower in δ18O than preglacial Cenozoic seawater. Thus, the fluxes of oxygen–isotope exchange associated with weathering and hydrothermal alteration reactions have remained stable throughout the Phanerozoic, despite major tectonic, climatic and biologic perturbations. This stability implies that a long-term feedback exists between the global rates of seafloor spreading and weathering. We note that massive dolomites have crystallized in pre-Cenozoic units at temperatures >40 °C. Since Cenozoic platforms generally have not reached such conditions, their thermal immaturity could explain their paucity of dolomites.


2017 ◽  
Vol 137 ◽  
pp. 6-10 ◽  
Author(s):  
Antonín Knížek ◽  
Markéta Zukalová ◽  
Ladislav Kavan ◽  
Arnošt Zukal ◽  
Petr Kubelík ◽  
...  

Geosciences ◽  
2021 ◽  
Vol 11 (7) ◽  
pp. 264
Author(s):  
Anna Yurchenko ◽  
Andrey Voropaev ◽  
Elena Kozlova ◽  
Nikita Morozov ◽  
Mikhail Spasennykh

This paper addresses potential application of data on stable carbon and oxygen isotope composition of carbonates for study of organic rich source rocks on the example of the Late Jurassic–Early Cretaceous Bazhenov Formation (West Siberian petroleum basin, Russia). Geochemical studies were conducted for sections located in central (most productive) and peripheral (northern and southern) regions of the Bazhenov Formation distribution area, containing deposits formed under different conditions. We identified key factors impacting stable isotope composition of carbonate minerals and established relation of their isotope composition to the formation conditions. Using a thermodynamic model of carbon and oxygen isotope exchange in the carbonate–water–carbon dioxide system, it is shown that variations in the isotope composition of secondary carbonates are affected by isotopic composition of primary carbonates in sediments and by the isotope exchange reactions with water and carbon dioxide, generated during the source rocks transformation. Our results demonstrate that stable isotope data for carbonates in the Bazhenov Formation together with standard geochemical methods can be efficiently applied to determine sedimentation conditions and secondary alteration processes of oil source rocks.


2004 ◽  
Vol 136 (2) ◽  
pp. 3350-3363 ◽  
Author(s):  
Lucas A. Cernusak ◽  
Graham D. Farquhar ◽  
S. Chin Wong ◽  
Hilary Stuart-Williams

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