scholarly journals Survey of Tick-borne-disease from Ornithodoros spp. in Uninhabited Islands of Korea.

2019 ◽  
Vol 11 (1) ◽  
Author(s):  
Sun-Woo Han ◽  
Yong-Sun Jo ◽  
Jeong Byoung Chae ◽  
Yoon Kyoung Cho ◽  
Nam-Shik Shin ◽  
...  
Keyword(s):  
16S Rrna ◽  
16S Rrna Gene ◽  
Anaplasma Phagocytophilum ◽  
Economic Losses ◽  
Rrna Gene ◽  
Gene Fragment ◽  
Sequence Identification ◽  
Tick Borne Disease ◽  
Anaplasma Bovis ◽  
Breeding Place

ObjectiveThe aim of this study is to survey data of ticks distribution of Korean islands and to investigate pathogens in Argasid ticks.IntroductionTicks and tick-borne diseases have been thought global important issues, because it's affect to animal and human health and are the cause of significant economic losses. The genus Ornithodoros spp., which is included in Family Argasidae, is usually associated with wild animals including seabirds and it was difficult to investigate because seabirds’ nests are found in inaccessible uninhabited islands. However, Ornithodoros spp. has been known for the vector of many diseases including African swine fever.MethodsIn this study, nest with soil and litter of seabirds were collected, to investigate Ornithodoros species from 9 uninhabited islands, Nan-do, Chilsan-do, Chilbal-do, Sogukhol-do, Googul-do, Gaerin-do, Sasu-do, Hong-do (Hallyeohaesang) and Dok-do located western and southern part of the Korea from July, 2017 to September in 2018. The islands are known for breeding places of migratory and resident birds. Maximum ten nests with soil and litter of seabirds were collected from one uninhabited island for the conservation of the islands environment. Ticks were collected from nest with soil and litter of seabirds using Tullgren funnel and were assayed for tick identification by PCR using 16S rRNA gene and tick-borne pathogens including Rickettia spp., Borrelia spp., Bartonella spp., Ehrlichia chaffensis, Ehrlichia canis, Anaplasma phagocytophilum and Anaplasma bovis by nested PCR.ResultsTotal 65 Ornithodoros species ticks from 338 seabird's (black-tailed gull, Larus crassirotris; streaked shearwater, Calonectris leucomelas and Swinhoe's storm petrel, Oceanodroma monorhis) nesting soil with litter in 9 uninhabited islands. In the sequence identification of 16S rRNA gene fragment of Ornithodoros species, O. capensis and O. sawaii were 37 and 28, respectively. In the analyses of tick-borne pathogens, Borrelia spp. (n=5) was detected in O. sawaii from Gaerin-do and Googul-do. The total detection rate of Borrelia sp. from Ornithodoros spp. was 7.69% (5/65).ConclusionsIn this research, we discovered that O. sawaii are habitat in west and southern part of uninhabited islands to breeding place of black-tailed gulls and streaked shearwater and O. capensis are habitat in uninhabited islands related to breeding place of streaked shearwater. This is first report of the Borrelia spp. from Ornithodoros sawaii in Korea. 

Streptomyces rhizophilus Causes Potato Common Scab Disease

Plant Disease ◽  
2021 ◽  
Author(s):  
Qi Wei ◽  
Jie Li ◽  
Shuai Yang ◽  
Wenzhong Wang ◽  
Fanxiang Min ◽  
...  
Keyword(s):  
16S Rrna ◽  
16S Rrna Gene ◽  
Common Scab ◽  
Bacterial Species ◽  
Economic Losses ◽  
Pcr Analysis ◽  
Rrna Gene ◽  
Heilongjiang Province ◽  
Epidemic Disease ◽  
Genus Streptomyces

Common scab (CS) caused by Streptomyces spp. is a significant soilborne potato disease that results in tremendous economic losses globally. Identification of CS-associated species of the genus Streptomyces can enhance understanding of the genetic variation of these bacterial species and is necessary for the control of this epidemic disease. The present study isolated Streptomyces strain 6-2-1(1) from scabby potatoes in Keshan County, Heilongjiang Province, China. PCR analysis confirmed that the strain harbored the characteristic Streptomyces pathogenicity island (PAI) genes (txtA, txtAB, nec1, and tomA). Pathogenicity assays proved that the strain caused typical scab lesions on potato tuber surfaces and necrosis on radish seedlings and potato slices. Subsequently, the strain was systemically characterized at morphological, physiological, biochemical and phylogenetic levels. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain 6-2-1(1) shared 99.86% sequence similarity with Streptomyces rhizophilus JR-41T, isolated initially from bamboo in rhizospheric soil in Korea. PCR amplification followed by Sanger sequencing of the 16S rRNA gene of 164 scabby potato samples collected in Heilongjiang Province from 2019 to 2020 demonstrated that approximately 2% of the tested samples were infected with S. rhizophilus. Taken together, these results demonstrate that S. rhizophilus is capable of causing potato CS disease and may pose a potential challenge to potato production in Heilongjiang Province of China.

scholarly journals Microbiota composition and evenness predict survival rate of oysters confronted to Pacific Oyster Mortality Syndrome

2018 ◽  
Author(s):  
Camille Clerissi ◽  
Julien de Lorgeril ◽  
Bruno Petton ◽  
Aude Lucasson ◽  
Jean-Michel Escoubas ◽  
...  
Keyword(s):  
Survival Rate ◽  
16S Rrna ◽  
16S Rrna Gene ◽  
Pacific Oyster ◽  
Economic Losses ◽  
Rrna Gene ◽  
Microbiota Composition ◽  
Disease Dynamics ◽  
Oyster Mortality ◽  
Resistant Family

AbstractPacific Oyster Mortality Syndrome (POMS) affects Crassostrea gigas oysters worldwide and caused important economic losses. Disease dynamics was recently deciphered and revealed a multiple and progressive infection caused by the Ostreid herpesvirus OsHV-1 µVar, triggering an immunosuppression followed by microbiota destabilization and bacteraemia by opportunistic bacterial pathogens. However, it remains unknown if microbiota might participate to oyster protection to POMS, and if microbiota characteristics might be predictive of oyster mortalities. To tackle this issue, we transferred full-sib progenies of resistant and susceptible oyster families from hatchery to the field during a period in favour of POMS. After five days of transplantation, oysters from each family were either sampled for individual microbiota analyses using 16S rRNA gene-metabarcoding or transferred into facilities to record their survival using controlled condition. As expected, all oysters from susceptible families died, and all oysters from the resistant family survived. Quantification of OsHV-1 and bacteria showed that five days of transplantation was long enough to contaminate oysters by POMS, but not for entering the pathogenesis process. Thus, it was possible to compare microbiota characteristics between resistant and susceptible oyster families at the early steps of infection. Strikingly, we found that microbiota evenness and abundances of Cyanobacteria (Subsection III, family I), Mycoplasmataceae, Rhodobacteraceae, and Rhodospirillaceae were significantly different between resistant and susceptible oyster families. We concluded that these microbiota characteristics might predict oyster mortalities.

scholarly journals COMPARISON OF DIAGNOSTIC EFFECTIVENESS OF METHODS OF DETECTION OF COXIELLA BURNETII IN BLOOD OF PATIENTS WITH Q FEVER BASED ON AMPLIFICATION OF 16S rRNA GENE FRAGMENTS (STANDARD PCR) AND groEL GENE (REALTIME PCR)

2016 ◽  
pp. 70-74
Author(s):  
Yu. A. Panferova ◽  
O. A. Freilikhman ◽  
N. K. Tokarevich ◽  
S. F. Karpenko ◽  
Kh. M. Galimzyanov
Keyword(s):  
16S Rrna ◽  
16S Rrna Gene ◽  
Coxiella Burnetii ◽  
Q Fever ◽  
Clinical Material ◽  
Rrna Gene ◽  
Gene Fragment ◽  
Rt Pcr ◽  
Pcr Marker ◽  
Infectious Process

Aim. Comparison of diagnostic capabilities of 2 variants of PCR for detection of Coxiella burnetii persistence in dynamics of infectious process in patients with Q fever. Materials and methods. 110 samples of clinical material, obtained from patients with Q fever in an endemic region for this infection (Astrakhan region), were studied. The samples were studied in a standard PCR (marker - 16S rRNA gene fragment) and in real-time PCR (RT-PCR) (marker - groEL gene fragment). Results. Both markers were established to be perspective for detection of C. burnetii DNA in clinical material, and RT-PCR detects positive result including late stages of the disease (illness day 21 - 31). Conclusion. This study is the first Russian publication on comparison on different PCR variants for detection of C. burnetii in blood of Q fever patients in dynamics of the infectious process.

scholarly journals Phylogenetic position of Odorrana macrotympana (Yang, 2008) (Anura, Ranidae) and extension of its geographical distribution

Herpetozoa ◽  
2022 ◽  
Vol 35 ◽  
pp. 9-19
Author(s):  
Shuo Liu ◽  
Dingqi Rao ◽  
Dongru Zhang ◽  
Ye Htet Lwin ◽  
Mingzhong Mo ◽  
...  
Keyword(s):  
16S Rrna ◽  
Molecular Phylogeny ◽  
16S Rrna Gene ◽  
Geographical Distribution ◽  
New Records ◽  
First Record ◽  
Phylogenetic Position ◽  
Rrna Gene ◽  
Gene Fragment ◽  
Wildlife Sanctuary

Based on a 16S rRNA gene fragment, a molecular phylogeny for the genus Odorrana Fei, Ye & Huang, 1990 was reconstructed, the validity of the poorly-known ranid species O. macrotympana (Yang, 2008) was confirmed and its phylogenetic position was evaluated. In addition, we report the first country record of O. macrotympana from Myanmar, based on our new records from Htamanthi Wildlife Sanctuary, Sagaing Division and present a supplementary description of this species. This report also constitutes the first record of O. macrotympana from outside of China.

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