scholarly journals A Single Nucleotide Polymorphism in LOC534614 as an Unknown Gene Associated with Body Weight and Cold Carcass Weight in Hanwoo (Korean Cattle)

2010 ◽  
Vol 23 (12) ◽  
pp. 1543-1551 ◽  
Author(s):  
Y.-S. Lee ◽  
D. Y. Oh ◽  
J.-J. Kim ◽  
J.-H. Lee ◽  
H.-S. Park ◽  
...  
2005 ◽  
Vol 83 (4) ◽  
pp. 927-932 ◽  
Author(s):  
P. J. Kononoff ◽  
H. M. Deobald ◽  
E. L. Stewart ◽  
A. D. Laycock ◽  
F. L. S. Marquess

2016 ◽  
Vol 28 (2) ◽  
pp. 132
Author(s):  
M. S. Ortega ◽  
S. Wohlgemuth ◽  
D. J. Null ◽  
J. B. Cole ◽  
P. J. Hansen

A single nucleotide polymorphism for COQ9 has been associated with genetic merit for fertility in 2 separate populations of Holstein cattle, with the A allele associated with higher fertility. COQ9 is necessary for the synthesis of coenzyme Q10, a component of the electron transport system of the mitochondria. We evaluated the effect of COQ9 genotype on the electron transport system, body weight changes after calving, and phenotypic measurements of fertility and production in Holstein cows. The single nucleotide polymorphism in COQ9 was genotyped using a Sequenom MassARRAY® (Sequenom Inc., San Diego, CA, USA). In the first study, cows ≥200 days in milk were selected for analysis of mitochondrial oxygen consumption [COQ9 genotype: AA (n = 12), AG (n = 12), and GG (n = 12)]. Peripheral blood mononuclear cells were isolated and respiration assessed using the Oroboros O2k high-resolution respirometer to evaluate routine respiration, R; leak respiration, L; and electron transport system capacity, E. There were additive effects of genotype on respiratory function (P < 0.05): R was 3.4 ± 0.3, 4.7 ± 0.3, and 4.9 ± 0.3 pmol of O2/s per 106 cells, L was 1.9 ± 0.3, 2.7 ± 0.3, and 3.0 ± 0.3 pmol of O2/s per 106 cells, and the uncoupling control ratio (E/R) was 3.4 ± 0.2, 2.5 ± 0.2, and 2.1 ± 0.2 for AA, AG, and GG, respectively. In a second study, body weight was recorded for AA (n = 106), AG (n = 223), and GG (n = 86) cows during the first 20 weeks postpartum for 2 consecutive lactations. In both lactations, body weight postpartum was affected by genotype × time postpartum (P < 0.001), with cows of the AA genotype experiencing less weight loss than AG (second lactation only) and GG cows. Days open, services per conception, and 305-day milk yield (MY) for the first 2 lactations were evaluated in a population of 2273 Holstein cows grouped based on predicted transmitting ability for daughter pregnancy rate: ≤–1 (n = 1220) and ≥1.5 (n = 1053). Continuous data were analysed using the MIXED procedure of SAS, and categorical data were analysed using the GLIMMIX procedure. The model included farm, genotype, and the numerator relationship matrix to account for (co)variances among animals. Additive and dominance effects were estimated. Genotype affected each trait (P < 0.05). Values for AA, AG, and GG for the first lactation were as follows: days open, 123.6 ± 3.5, 134.3 ± 2.8, and 139.4 ± 3.5 days; services per conception, 2.4 ± 0.1, 2.5 ± 0.1, and 2.7 ± 0.1; and MY, 11 278 ± 65, 11 416 ± 51, and 11 478 ± 65 kg. For the second lactation COQ9 affected (P < 0.05) days open (133.2 ± 4.7, 142.9 ± 3.1, and 147.9 ± 3.9 days) and services per conception (2.5 ± 0.1, 2.6 ± 0.8, and 2.7 ± 0.1), but there was no effect (P = 0.63) on MY (11 486 ± 66, 11 502 ± 52, and 11 526 ± 57 kg). Results indicate that the same genotype associated with genetic merit for fertility (AA) is associated with more efficient respiratory function and less body-weight loss postpartum. Moreover, the favourable genotype was associated with higher phenotypic measurements of fertility and lower MY. Results indicate the single nucleotide polymorphism in COQ9 could be a potential marker for fertility and that allelic variants may affect fertility by altering respiratory efficiency. Study was supported by USDA AFRI 2013–68004–20365.


2012 ◽  
Vol 34 (10) ◽  
pp. 1320-1327 ◽  
Author(s):  
Xi CHEN ◽  
Hui ZHANG ◽  
Yu-Xiang WANG ◽  
Shou-Zhi WANG ◽  
Bo-Han CHENG ◽  
...  

2017 ◽  
Vol 57 (8) ◽  
pp. 1631 ◽  
Author(s):  
Shinichiro Ogawa ◽  
Hirokazu Matsuda ◽  
Yukio Taniguchi ◽  
Toshio Watanabe ◽  
Yuki Kitamura ◽  
...  

Genomic prediction (GP) of breeding values using single nucleotide polymorphism (SNP) markers can be conducted even when pedigree information is unavailable, providing phenotypes are known and marker data are provided. While use of high-density SNP markers is desirable for accurate GP, lower-density SNPs can perform well in some situations. In the present study, GP was performed for carcass weight and marbling score in Japanese Black cattle using SNP markers of varying densities. The 1791 fattened steers with phenotypic data and 189 having predicted breeding values provided by the official genetic evaluation using pedigree data were treated as the training and validation populations respectively. Genotype data on 565837 autosomal SNPs were available and SNPs were selected to provide different equally spaced SNP subsets of lower densities. Genomic estimated breeding values (GEBVs) were obtained using genomic best linear unbiased prediction incorporating one of two types of genomic relationship matrices (G matrices). The GP accuracy assessed as the correlation between the GEBVs and the corrected records divided by the square root of estimated heritability was around 0.85 for carcass weight and 0.60 for marbling score when using 565837 SNPs. The type of G matrix used gave no substantial difference in the results at a given SNP density for traits examined. Around 80% of the GP accuracy was retained when the SNP density was decreased to 1/1000 of that of all available SNPs. These results indicate that even when a SNP panel of a lower density is used, GP may be beneficial to the pre-selection for the carcass traits in Japanese Black young breeding animals.


BMC Genetics ◽  
2008 ◽  
Vol 9 (1) ◽  
pp. 33 ◽  
Author(s):  
Hyun Cheong ◽  
Du-Hak Yoon ◽  
Byung Park ◽  
Lyoung Kim ◽  
Joon Bae ◽  
...  

2019 ◽  
Vol 27 (4) ◽  
pp. 249
Author(s):  
L. Q. Yang ◽  
K. Zhang ◽  
Q. Y. Wu ◽  
J. Li ◽  
S. J. Lai ◽  
...  

<p>Two unknown single nucleotide polymorphism (SNP) sites in exons 1 (c.194C&gt;T) and 2 (c.445T&gt;A) of meat-type rabbit <em>MSTN</em> gene were identified in the study. Our objective was to analyse the population genetics structure of the two novel SNP sites in 230 individuals from six breeds and their associations with carcass traits of rabbits. We found that live body weight (BW), cold carcass weight (CCW), reference carcass weight (RCW), CCW percentage (P<sub>CCW</sub>) and RCW percentage (P<sub>RCW</sub>) of the rabbits with the genotype CC at the c.194C&gt;T of exon 1 or AA at the c.445T&gt;A of exon 2 were significantly higher than those with other genotypes. Diplotype significantly affected BW, RCW, CCW, P<sub>RCW</sub> (<em>P</em>&lt;0.01) and P<sub>CCW</sub> and P<sub>CM</sub> (<em>P</em>&lt;0.05). CC/AA was the advantageous diplotype for BW, RCW, CCW and P<sub>CM</sub>, and TT/AA was the advantageous diplotype for P<sub>CCW</sub> and P<sub>RCW</sub>. In contrast, TT/TT was the negative diplotype for BW, CCW, RCW, P<sub>CCW</sub> and P<sub>RCW</sub>, and TT/AA was the negative diplotype for P<sub>CM</sub>. The results suggest that the two new mutations of <em>MSTN</em> gene significantly affected BW, CCW, RCW, P<sub>CCW</sub> and P<sub>RCW</sub> of rabbits, and <em>MSTN</em> may be an important candidate gene of carcass traits in meat-type rabbits.</p>


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