Prediction of bacterial species richness in the South China Sea slope sediments

2013 ◽  
Vol 33 (1) ◽  
pp. 286-293
Author(s):  
李涛 LI Tao ◽  
王鹏 WANG Peng
2020 ◽  
Vol 10 (10) ◽  
pp. 1654-1660
Author(s):  
Qiuxiao Yin ◽  
Xuefei Xi ◽  
Lei Wang ◽  
Xiaohua Fu

In this study, the cbb genes which encode the key enzymes in the Calvin cycle were used as functional markers to investigate the distribution pattern of CO2 fixing potential of autotrophic bacteria at different depths of the South China Sea (SCS). The results revealed that cbb gene abundance was similar between the surface and the deep layer of SCS, over two fold higher than the middle layer. The types of cbb genes showed dramatically different distributions with depths. Metagenomic amplicon sequencing revealed that Synechococcus was the main genus containing cbb genes in the surface layer, along with Rubrivivax and Limnohabitans in the middle, and unclassified Epsilonproteobacteria in the deep. Furthermore, the surface layer had the highest CO2 fixing potential due to that Synechococcus had a high CO2 fixation capacity and relatively high autotrophic growth rate. The difference in the distribution of bacterial species and therefore cbb types with depths was potentially affected by the variation in light intensity and concentration of dissolved oxygen, inorganic carbon and reducing substances.


2021 ◽  
Author(s):  
Qiumei Quan ◽  
Yong Liu ◽  
Teng Wang ◽  
Chunhou Li

Abstract Based on the key ecological processes of parrotfish in coral reefs, we compiled species presence-absence data across 51 sites in the South China Sea to identify the distribution and composition of parrotfish and explore the relationship between species distribution and environmental factors, and 50 species (the Pacific: 57 species) of parrotfish were record. Nansha islands had the highest abundance with 41 parrotfish species. Nestedness analysis indicated parrotfish community had statistically significant nested patterns in the South China Sea and Nansha islands was the topmost site of nested matrix rank. Scleractinian coral species richness and Log(reef area) both had a significant effect on sites nested matrix rank (P < 0.05), which supports habitat nestedness hypothesis in the South China Sea. Scrapers were the most important functional group composition while the browser had a greater contribution on species nested matrix rank. Linear regression model showed parrotfish species richness increased with increasing longitude, scleractinian coral species richness and reef area. Variations in the parrotfish species richness in longitude was related to distance from the biodiversity hotspot in the Indo-Australian Archipelago. Parrotfish was mainly distributed in the range of 26-29℃, which was almost the same as the optimum temperature for coral growth. Nansha islands should be as biodiversity conservation priority areas, which could provide important reference significance for conservation efforts of parrotfish in degraded coral reefs habitats, especially in the context of increasing natural variability and anthropogenic disturbance.


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