scholarly journals Evolutionary ecology of microorganisms: from the tamed to the wild

2015 ◽  
Author(s):  
Jay T Lennon ◽  
Vincent J Denef
Keyword(s):  
Evolutionary Biology ◽  
Evolutionary Dynamics ◽  
Evolutionary Ecology ◽  
Community Context ◽  
Ecological Processes ◽  
Rates Of Evolution ◽  
Ecological Principles ◽  
Managed Ecosystems ◽  
Microbial Systems ◽  
Empirical Approaches

An overarching goal of biology is to understand how evolutionary and ecological processes generate and maintain biodiversity. While evolutionary biologists interested in biodiversity tend to focus on the mechanisms controlling rates of evolution and how this influences the phylogenetic relationship among species, ecologists attempt to explain the distribution and abundance of taxa based upon interactions among species and their environment. Recently, a more concerted effort has been made to integrate some of the theoretical and empirical approaches from the fields of ecology and evolutionary biology. This integration has been motivated in part by the growing evidence that evolution can happen on “rapid” or contemporary time scales, suggesting that eco-evolutionary feedbacks can alter system dynamics in ways that cannot be predicted based on ecological principles alone. As such, it may be inappropriate to ignore evolutionary processes when attempting to understand ecological phenomena in natural and managed ecosystems. In this chapter, we highlight why it is particularly important to consider eco-evolutionary feedbacks for microbial populations. We emphasize some of the major processes that are thought to influence the strength of eco-evolutionary dynamics, provide an overview of methods used to quantify the relative importance of ecology and evolution, and showcase the importance of considering evolution in a community context and how this may influence the dynamics and stability of microbial systems under novel environmental conditions.

scholarly journals Evolutionary ecology of microorganisms: from the tamed to the wild

2015 ◽  
Author(s):  
Jay T Lennon ◽  
Vincent J Denef
Keyword(s):  
Evolutionary Biology ◽  
Evolutionary Dynamics ◽  
Evolutionary Ecology ◽  
Community Context ◽  
Ecological Processes ◽  
Rates Of Evolution ◽  
Ecological Principles ◽  
Managed Ecosystems ◽  
Microbial Systems ◽  
Empirical Approaches

An overarching goal of biology is to understand how evolutionary and ecological processes generate and maintain biodiversity. While evolutionary biologists interested in biodiversity tend to focus on the mechanisms controlling rates of evolution and how this influences the phylogenetic relationship among species, ecologists attempt to explain the distribution and abundance of taxa based upon interactions among species and their environment. Recently, a more concerted effort has been made to integrate some of the theoretical and empirical approaches from the fields of ecology and evolutionary biology. This integration has been motivated in part by the growing evidence that evolution can happen on “rapid” or contemporary time scales, suggesting that eco-evolutionary feedbacks can alter system dynamics in ways that cannot be predicted based on ecological principles alone. As such, it may be inappropriate to ignore evolutionary processes when attempting to understand ecological phenomena in natural and managed ecosystems. In this chapter, we highlight why it is particularly important to consider eco-evolutionary feedbacks for microbial populations. We emphasize some of the major processes that are thought to influence the strength of eco-evolutionary dynamics, provide an overview of methods used to quantify the relative importance of ecology and evolution, and showcase the importance of considering evolution in a community context and how this may influence the dynamics and stability of microbial systems under novel environmental conditions.

scholarly journals Evolutionary ecology of microorganisms: from the tamed to the wild

2015 ◽  
Author(s):  
Jay T Lennon ◽  
Vincent J Denef
Keyword(s):  
Evolutionary Biology ◽  
Evolutionary Dynamics ◽  
Evolutionary Ecology ◽  
Community Context ◽  
Ecological Processes ◽  
Rates Of Evolution ◽  
Ecological Principles ◽  
Managed Ecosystems ◽  
Microbial Systems ◽  
Empirical Approaches

An overarching goal of biology is to understand how evolutionary and ecological processes generate and maintain biodiversity. While evolutionary biologists interested in biodiversity tend to focus on the mechanisms controlling rates of evolution and how this influences the phylogenetic relationship among species, ecologists attempt to explain the distribution and abundance of taxa based upon interactions among species and their environment. Recently, a more concerted effort has been made to integrate some of the theoretical and empirical approaches from the fields of ecology and evolutionary biology. This integration has been motivated in part by the growing evidence that evolution can happen on “rapid” or contemporary time scales, suggesting that eco-evolutionary feedbacks can alter system dynamics in ways that cannot be predicted based on ecological principles alone. As such, it may be inappropriate to ignore evolutionary processes when attempting to understand ecological phenomena in natural and managed ecosystems. In this chapter, we highlight why it is particularly important to consider eco-evolutionary feedbacks for microbial populations. We emphasize some of the major processes that are thought to influence the strength of eco-evolutionary dynamics, provide an overview of methods used to quantify the relative importance of ecology and evolution, and showcase the importance of considering evolution in a community context and how this may influence the dynamics and stability of microbial systems under novel environmental conditions.

scholarly journals Genetic architecture constrains exploitation of siderophore cooperation inBurkholderia cenocepacia

2019 ◽  
Author(s):  
Santosh Sathe ◽  
Anugraha Mathew ◽  
Kirsty Agnoli ◽  
Leo Eberl ◽  
Rolf Kümmerli
Keyword(s):  
Evolutionary Biology ◽  
Genetic Architecture ◽  
Evolutionary Dynamics ◽  
Receptor Gene ◽  
Burkholderia Cenocepacia ◽  
Model Organisms ◽  
The Media ◽  
Microbial Systems ◽  
Competition Assays ◽  
Microbial Study

Explaining how cooperation can persist in the presence of cheaters, exploiting the cooperative acts, is a challenge for evolutionary biology. While microbial systems have proved extremely useful to test evolutionary theory and identify mechanisms maintaining cooperation, our knowledge is often limited to insights gained from a few model organisms. Here, we introduce siderophore secretion by the bacteriumBurkholderia cenocepaciaas a novel study system. Using a combination of phenotypic and competition assays we found that ornibactin, the main siderophore used for iron scavenging in this species, is secreted into the media, can be shared as public good between cells, but cannot be exploited by ornibactin-defective mutants. Molecular analysis revealed that cheating is compromised because the ornibactin receptor gene and genes involved in ornibactin synthesis are co-expressed from the same operon, such that disruptive mutations in the upstream synthesis genes compromise receptor availability. To prove that it is the genetic architecture of the siderophore locus that prevents cheating, we broke the linked traits by expressing the ornibactin receptor from a plasmid, a measure that turned the ornibactin mutant into a functional cheater. A literature survey acrossBurkholderiaspecies suggests that the genetic linkage independently broke over evolutionary time scales in several lineages, indicating that cheating and countermeasures might be under selection. Altogether, our results highlight that expanding our repertoire of microbial study systems leads to new discoveries and reinforce the view that social interactions shape evolutionary dynamics in microbial communities.

scholarly journals Evolutionary Ecology of Natural Comammox Nitrospira Populations

mSystems ◽  
2022 ◽  
Author(s):  
Alejandro Palomo ◽  
Arnaud Dechesne ◽  
Otto X. Cordero ◽  
Barth F. Smets
Keyword(s):  
Evolutionary Dynamics ◽  
Evolutionary Ecology ◽  
Single Species ◽  
Evolutionary Processes ◽  
Ecological Processes ◽  
Interacting Species ◽  
Microbial Species ◽  
Experimental Systems ◽  
Over Time

Microbial species interact with each other and their environment (ecological processes) and undergo changes in their genomic repertoire over time (evolutionary processes). How these two classes of processes interact is largely unknown, especially for complex communities, as most studies of microbial evolutionary dynamics consider single species in isolation or a few interacting species in simplified experimental systems.

scholarly journals Landscapes of fear: from trophic cascades to applied management and population ecology

2017 ◽  
Author(s):  
Sonny S Bleicher
Keyword(s):  
Population Biology ◽  
Evolutionary Dynamics ◽  
Focal Point ◽  
Work Group ◽  
Stress Hormones ◽  
Physical Space ◽  
Community Context ◽  
Continuous Measure ◽  
Evolutionary Context ◽  
Study Population

Predator-Prey dynamics, and their trophic impacts, have functioned as a focal point in both community and population biology for five decades. The work-group focusing on these dynamics has however largely changed the focus of their work from trophic effects to the study of non-consumptive effects of predation-- the “ecology of fear”. An increasing number of studies chose to spatially chart wildlife populations’ risk assessment and of those the majority use optimal patch-use (giving-up densities) as a continuous measure of fear. These charts, “landscapes-of-fear” (LOFs) originated in conservation literature and the reintroduction of wolves to Yellowstone. Today, they are used to study population habitat selection and venture into the evolutionary context with studies examining the mechanisms by which species coexist in the same physical space. This review predicts increase in, and encourages the use of, LOFs: as a conservation tool to assess species land-use; as a bridge between ecology and neurology with stress hormones as indicators fear; and as a tool to compare species’ evolutionary dynamics within a community context.

scholarly journals Evolution of correlated complexity in the radically different courtship signals of birds-of-paradise

2018 ◽  
Author(s):  
Russell A. Ligon ◽  
Christopher D. Diaz ◽  
Janelle L. Morano ◽  
Jolyon Troscianko ◽  
Martin Stevens ◽  
...  
Keyword(s):  
Sexual Selection ◽  
Natural Selection ◽  
Evolutionary Biology ◽  
Evolutionary Dynamics ◽  
Functional Integration ◽  
Empirical Support ◽  
Evolutionary Patterns ◽  
Evolutionary Innovation ◽  
Birds Of Paradise ◽  
Analytical Approaches

Ornaments used in courtship often vary wildly among species, reflecting the evolutionary interplay between mate preference functions and the constraints imposed by natural selection. Consequently, understanding the evolutionary dynamics responsible for ornament diversification has been a longstanding challenge in evolutionary biology. However, comparing radically different ornaments across species, as well as different classes of ornaments within species, is a profound challenge to understanding diversification of sexual signals. Using novel methods and a unique natural history dataset, we explore evolutionary patterns of ornament evolution in a group - the birds-of-paradise - exhibiting dramatic phenotypic diversification widely assumed to be driven by sexual selection. Rather than the tradeoff between ornament types originally envisioned by Darwin and Wallace, we found positive correlations among cross-modal (visual/acoustic) signals indicating functional integration of ornamental traits into a composite unit - the courtship phenotype. Furthermore, given the broad theoretical and empirical support for the idea that systemic robustness - functional overlap and interdependency - promotes evolutionary innovation, we posit that birds-of-paradise have radiated extensively through ornamental phenotype space as a consequence of the robustness in the courtship phenotype that we document at a phylogenetic scale. We suggest that the degree of robustness in courtship phenotypes among taxa can provide new insights into the relative influence of sexual and natural selection on phenotypic radiations.Author SummaryAnimals frequently vary widely in ornamentation, even among closely related species. Understanding the patterns that underlie this variation is a significant challenge, requiring comparisons among drastically different traits - like comparing apples to oranges. Here, we use novel analytical approaches to quantify variation in ornamental diversity and richness across the wildly divergent birds-of-paradise, a textbook example of how sexual selection can profoundly shape organismal phenotypes. We find that color and acoustic complexity, along with behavior and acoustic complexity, are positively correlated across evolutionary time-scales. Positive covariation among ornament classes suggests that selection is acting on correlated suites of traits - a composite courtship phenotype - and that this integration may be partially responsible for the extreme variation we see in birds-of-paradise.

scholarly journals Basic Conceptual Structure of Evolutionary Ecology

2021 ◽  
Vol 7 (1) ◽  
Author(s):  
Rogério Parentoni Martins
Keyword(s):  
Evolutionary Biology ◽  
Evolutionary Ecology ◽  
Genotypic Variation ◽  
Structured Populations ◽  
Phenotypic Variance ◽  
Selective Agents ◽  
Survival And Reproduction ◽  
Environmental Variations ◽  
Successive Generations ◽  
Evolutionary Consequences

Concepts are linguistic structures with specific syntax and semantics used as sources of communicating ideas. Concepts can be simple (e.g., tree), complex (e.g., adaptation) and be part of a network of interactions that characterize an area of scientific research. The conceptual interrelationships and some evolutionary consequences upon which these interrelations are based will be addressed here. The evolutionary ecology is an area of research from the population evolutionary biology that deals mainly with the effect of positive natural selection on panmictic and structured populations. Environmental factors, conditions and variable resources in time and space, constitute the selective agents that act on the phenotypic and genotypic variation of populations in a single generation, could result in evolutionary adaptations, which are simply those traits that are most likely to confer survival and reproduction (evolutionary fitness) of the phenotypes that carry them in successive generations. The bases of adaptation are mainly genetic and transmitted vertically (classical Mendelian mechanisms) or horizontally (in the case of microorganisms). The phenotypic variance of the population is a conjoint consequence of the additive genotypic variance (heritability), nonadditive variance (dominance and epistasis), pleiotropy and the interaction between genotype and environment. The ability of the same genotype to respond to spatial environmental variations can result in phenotypic plasticity that manifests itself through reaction norms. The total phenotypic variation and its genetic and environmental components influence the ability of a population to evolve (evolvability).

scholarly journals Phenotype bias determines how RNA structures occupy the morphospace of all possible shapes

2020 ◽  
Author(s):  
Kamaludin Dingle ◽  
Fatme Ghaddar ◽  
Petr Šulc ◽  
Ard A. Louis
Keyword(s):  
Natural Selection ◽  
Rna Secondary Structure ◽  
Evolutionary Biology ◽  
Evolutionary Dynamics ◽  
Coarse Grained ◽  
Rna Structures ◽  
Non Coding Rna ◽  
Ultimate Cause ◽  
Uniform Random Sampling ◽  
Bias Versus

The relative prominence of developmental bias versus natural selection is a long standing controversy in evolutionary biology. Here we demonstrate quantitatively that developmental bias is the primary explanation for the occupation of the morphospace of RNA secondary structure (SS) shapes. By using the RNAshapes method to define coarse-grained SS classes, we can directly measure the frequencies that non-coding RNA SS shapes appear in nature. Our main findings are, firstly, that only the most frequent structures appear in nature: The vast majority of possible structures in the morphospace have not yet been explored. Secondly, and perhaps more surprisingly, these frequencies are accurately predicted by the likelihood that structures appear upon uniform random sampling of sequences. The ultimate cause of these patterns is not natural selection, but rather strong phenotype bias in the RNA genotype-phenotype (GP) map, a type of developmental bias that tightly constrains evolutionary dynamics to only act within a reduced subset of structures which are easy to “find”.

Cutthroat Trout: Evolutionary Biology and Taxonomy

2018 ◽  
Keyword(s):  
Evolutionary Biology ◽  
Species Concept ◽  
Management Strategies ◽  
Cutthroat Trout ◽  
Ecological Processes ◽  
Oncorhynchus Clarkii ◽  
Voucher Specimens ◽  
Captive Propagation ◽  
Analytical Tools

<em>Abstract</em>.—The broad distribution and regional variation of Cutthroat Trout <em>Oncorhynchus clarkii </em>across western North America has led to considerable interest in the different forms from both scientific and recreational perspectives. This volume represents an attempt to describe this observed diversity with the most current information available and suggests a revised taxonomy for Cutthroat Trout. However, what is proposed in this volume will be subject to change or refinement as new techniques and analytical tools become available. In particular, remaining uncertainty would benefit from a comparison of all described lineages with a common set of morphological and genetic markers. A range-wide collection of voucher specimens will help to document variation in these characteristics, and we encourage field biologists to prioritize these collections. Future revisions will benefit from agreement on a species concept and explicitly state the assumptions of the chosen species concept. We encourage collaboration between managers and taxonomists to accurately delineate units of conservation that can be used by decision makers tasked with ensuring the long-term persistence of Cutthroat Trout lineages. The proposed taxonomic revisions herein validate many of the ongoing management strategies to conserve Cutthroat Trout, but we advise additional consideration of life-history diversity as an attainable management target. For long-term persistence of all Cutthroat Trout, maintaining and expanding the availability of high quality, well-connected stream and lake habitats will be a necessary first step to achieving desired conservation outcomes. Moreover, restoring and protecting ecological processes are key to conserving the diversity found within and among lineages of Cutthroat Trout. In systems where native Cutthroat Trout have been extirpated or suppressed, captive propagation and translocation are two potentially available tools to re-establish or reinvigorate populations. Last, we encourage fisheries managers and taxonomists to embrace the challenges that come with conserving locally unique forms of wide-ranging species like Cutthroat Trout.

Daphnia as a Model for Eco-evolutionary Dynamics

2018 ◽  
pp. 403-424
Author(s):  
Matthew R. Walsh ◽  
Michelle Packer ◽  
Shannon Beston ◽  
Collin Funkhouser ◽  
Michael Gillis ◽  
...  
Keyword(s):  
Life History ◽  
Evolutionary Dynamics ◽  
Model Organism ◽  
Life History Evolution ◽  
Ecological Processes ◽  
Evolutionary Forces ◽  
Evolutionary Changes ◽  
History Evolution ◽  
Ecological Importance ◽  
The Many

Much research has shown that variation in ecological processes can drive rapid evolutionary changes over periods of years to decades. Such contemporary adaptation sets the stage for evolution to have reciprocal impacts on the properties of populations, communities, and ecosystems, with ongoing interactions between ecological and evolutionary forces. The importance and generality of these eco-evolutionary dynamics are largely unknown. In this chapter, we promote the use of water fleas (Daphnia sp.) as a model organism in the exploration of eco-evolutionary interactions in nature. The many characteristics of Daphnia that make them suitable for laboratory study in conjunction with their well-known ecological importance in lakes, position Daphnia to contribute new and important insights into eco-evolutionary dynamics. We first review the influence of key environmental stressors in Daphnia evolution. We then highlight recent work documenting the pathway from life history evolution to ecology using Daphnia as a model. This review demonstrates that much is known about the influence of ecology on Daphnia life history evolution, while research exploring the genomic basis of adaptation as well as the influence of Daphnia life history traits on ecological processes is beginning to accumulate.

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