scholarly journals BioInstaller: a comprehensive R package to integrate bioinformatics resources

2018 ◽  
Author(s):  
Jianfeng Li ◽  
Bowen Cui ◽  
Yuting Dai ◽  
Ling Bai ◽  
Jinyan Huang
Keyword(s):  
Source Code ◽  
R Package ◽  
Community Based ◽  
Representational State Transfer ◽  
State Transfer ◽  
Application Programming ◽  
Representational State ◽  
Programming Interfaces ◽  
Shiny Application ◽  
R Functions

The number of bioinformatics resources, such as tools/scripts and databases are growing exponentially. This poses a great challenge for users to access, manage, and integrate the corresponding bioinformatics resources. To facilitate the request, we proposed a comprehensive R package, BioInstaller, which includes the R functions, Shiny application, and the HTTP representational state transfer (REST) application programming interfaces (APIs). We also established a community-based configuration pool to collect, access and share bioinformatics resources. The source code of BioInstaller is freely available at our lab website http://bioinfo.rjh.com.cn/labs/jhuang/tools/bioinstaller or popular package host GitHub at: https://github.com/JhuangLab/BioInstaller. Also, a docker image can be downloaded from DockerHub (https://hub.docker.com/r/bioinstaller).

scholarly journals BioInstaller: a comprehensive R package to integrate bioinformatics resources

2018 ◽  
Author(s):  
Jianfeng Li ◽  
Bowen Cui ◽  
Yuting Dai ◽  
Ling Bai ◽  
Jinyan Huang
Keyword(s):  
Source Code ◽  
R Package ◽  
Community Based ◽  
Representational State Transfer ◽  
State Transfer ◽  
Application Programming ◽  
Representational State ◽  
Programming Interfaces ◽  
Shiny Application ◽  
R Functions

The number of bioinformatics resources, such as tools/scripts and databases are growing exponentially. This poses a great challenge for users to access, manage, and integrate the corresponding bioinformatics resources. To facilitate the request, we proposed a comprehensive R package, BioInstaller, which includes the R functions, Shiny application, and the HTTP representational state transfer (REST) application programming interfaces (APIs). We also established a community-based configuration pool to collect, access and share bioinformatics resources. The source code of BioInstaller is freely available at our lab website http://bioinfo.rjh.com.cn/labs/jhuang/tools/bioinstaller or popular package host GitHub at: https://github.com/JhuangLab/BioInstaller. Also, a docker image can be downloaded from DockerHub (https://hub.docker.com/r/bioinstaller).

scholarly journals BioInstaller: a comprehensive R package to construct interactive and reproducible biological data analysis applications based on the R platform

PeerJ ◽  
2018 ◽  
Vol 6 ◽  
pp. e5853 ◽  
Author(s):  
Jianfeng Li ◽  
Bowen Cui ◽  
Yuting Dai ◽  
Ling Bai ◽  
Jinyan Huang
Keyword(s):  
Data Analysis ◽  
R Package ◽  
Biological Data ◽  
Representational State Transfer ◽  
State Transfer ◽  
Biological Data Analysis ◽  
Application Programming ◽  
Programming Interfaces ◽  
Shiny Application ◽  
R Functions

The increase in bioinformatics resources such as tools/scripts and databases poses a great challenge for users seeking to construct interactive and reproducible biological data analysis applications. Here, we propose an open-source, comprehensive, flexible R package named BioInstaller that consists of the R functions, Shiny application, the HTTP representational state transfer application programming interfaces, and a docker image. BioInstaller can be used to collect, manage and share various types of bioinformatics resources and perform interactive and reproducible data analyses based on the extendible Shiny application with Tom’s Obvious, Minimal Language and SQLite format databases. The source code of BioInstaller is freely available at our lab website, http://bioinfo.rjh.com.cn/labs/jhuang/tools/bioinstaller, the popular package host GitHub, https://github.com/JhuangLab/BioInstaller, and the Comprehensive R Archive Network, https://CRAN.R-project.org/package=BioInstaller. In addition, a docker image can be downloaded from DockerHub (https://hub.docker.com/r/bioinstaller/bioinstaller).

Pemantauan dan Pengendalian Parameter Akuaponik Menggunakan Representational State Transfer Application Programming Interface

2020 ◽  
Vol 9 (4) ◽  
pp. 394-402
Author(s):  
Helmy ◽  
Athadhia Febyana ◽  
Agung Al Rasyid ◽  
Arif Nursyahid ◽  
Thomas Agung Setyawan ◽  
...  
Keyword(s):  
Application Programming Interface ◽  
Total Dissolved Solids ◽  
Data Loss ◽  
Representational State Transfer ◽  
State Transfer ◽  
Application Programming ◽  
Representational State ◽  
Rest Api ◽  
E Mail ◽  
Programming Interface

Akuaponik merupakan penggabungan antara akuakultur dengan hidroponik. Salah satu sistem hidroponik yaitu sistem drip (tetes). Parameter yang perlu diperhatikan dalam budidaya akuaponik antara lain keasaman larutan nutrisi yaitu pH, suhu air, dan larutan nutrisi yang ditunjukkan oleh kepekatan zat padat terlarut dalam air (Total Dissolved Solids, TDS). Nutrisi tanaman diperoleh dari kotoran ikan yang mengandung nitrogen. Oleh karena itu, diperlukan pemantauan pH, TDS, dan suhu secara realtime dan pengendalian kelembapan tanah pada tanaman akuaponik agar tanaman tidak kekurangan nutrisi. Proses pengendalian menggunakan Representational State Transfer Application Programming Interface (REST API) dalam menerima nilai batas ambang yang ditentukan petani akuaponik melalui situs web dan mengirimkan nilai kelembapan tanah dan parameter kolam ikan berupa pH, suhu dan TDS ke server. Pengujian data loss dan delay pada sistem pemantauan dan pengendalian ini diperlukan untuk mengetahui keandalan alat dalam pengiriman dan penerimaan data. Selain itu, diperlukan notifikasi berupa e-mail kepada petani apabila nilai kelembapan tanah kurang dari batas ambang. Hasil pengujian menunjukkan sistem dapat mengirimkan notifikasi berupa e-mail kepada petani apabila nilai kelembapan tanah kurang dari batas ambang, rerata delay pemantauan node-gateway sebesar 6,01 detik, sedangkan rerata delay pemantauan gateway–server sebesar 10,02 detik, dan rerata delay pengendalian server–gateway sebesar 92,55 detik.

Case Studies Using Adobe™ Flex

2014 ◽  
pp. 210-226
Keyword(s):  
Web Services ◽  
Case Studies ◽  
Third Party ◽  
Internet Applications ◽  
Rich Internet Applications ◽  
Representational State Transfer ◽  
State Transfer ◽  
Application Programming ◽  
Restful Web Services ◽  
Programming Interfaces

REpresentational State Transfer (REST) is an architectural style that has recently emerged as a new approach to develop and deliver Web services. In fact, a great number of companies, such as eBay™, Twitter™, and Amazon.com™, have adopted REST to deliver Web services and Web feeds. This chapter offers a review of the support for consuming RESTful Web services in Adobe™ Flex™; then, it presents two case studies about the development of third-party RESTful Web services-based Rich Internet Applications (RIAs) using Adobe Flex™ along with HyperText Markup Languages (HTML) and JavaScript. The case studies presented in this chapter are intended to explain the common prerequisites for using RESTful Web services Application Programming Interfaces (APIs) as well as the particular implementation details, including the challenges and alternatives facing the capabilities and limitations of the target technologies. In addition, they exemplify the use of some User Interface (UI) patterns.

scholarly journals Rancang Bangun Web Service Aptimas Dengan Arsitektur Representational State Transfer (REST) API

Competitive ◽  
2021 ◽  
Vol 16 (2) ◽  
pp. 87-94
Author(s):  
Supono Syafiq ◽  
Sari Armiati
Keyword(s):  
Web Service ◽  
Application Programming Interface ◽  
Representational State Transfer ◽  
State Transfer ◽  
Application Programming ◽  
Representational State ◽  
Rest Api ◽  
Programming Interface

Saat ini data merupakan bagian yang penting di era transformasi teknologi informasi, proses komunikasi pun tidak dibatasi oleh perbedaan jenis perangkat yang digunakan membuat informasi dapat diakses degan mudah. Saat ini Lembaga Penelitian dan Pengabdian kepada Masyarakat (LPPM) Politeknik Pos Indonesia sudah memiliki pangkalan data dalam proses pengelolaan data penelitian, pengabdian, publikasi dan HaKI berbasis web. Saat ini akses data APTIMAS masih terpusat dan tidak bisa diakses dengan menggunakan aplikasi selain aplikasi APTIMAS, sehingga dibutuhkan sebuah media middle ware atau web service yang memberikan solusi bagaiman aplikasi lain dapat mengkases data APTIMAS seperti untuk pengembangan aplikasi Mobile, dashboard di aplikasi lain, kebutuhan data lainnya. Oleh karena itu dibangunlah sebuah Web Service dengan arsitektur Representational State Transfer (REST) Application Programming Interface (API) yang berfungsi jembatan dalam memberikan layanan untuk komunikasi data. Dengan dibangunnya aplikasi middleware web service ini, diharapkan APTIMAS sebagai penyedia data penelitian, pengabdian, publikasi dan HaKI di lingkungan internal perguruan tinggi Politeknik Pos Inodoneisa dapat digunakan sebagai rujukan pengambilan data untuk pengembangan aplikasi lain dan kebutuhan data di lingkungan kampus Politeknik Pos Indonesia, tanpa harus mengakses langsung ke database APTIMAS

scholarly journals Http Relay Binding (webHttpRelayBinding) and Crud Contract

2019 ◽  
pp. 51-54
Author(s):  
Dr. Manish L Jivtode
Keyword(s):  
World Wide Web ◽  
Web Services ◽  
Web Service ◽  
World Wide ◽  
Distributed Applications ◽  
Configuration File ◽  
Representational State Transfer ◽  
State Transfer ◽  
Representational State ◽  
Http Protocol

The Broker Architecture became popular involving client and server. Representational State Transfer(REST) architecture is the architecture of World Wide Web. REST uses HTTP protocol based on Servlet and ASMX technology is replaced by WCF web service technology. SOAP and REST are two kinds of WCF web services. REST is lightweight compared to SOAP and hence emerged as the popular technology for building distributed applications in the cloud. In this paper, conducted by exposing a HTTP endpoint address, HTTP relay binding (webHttpRelayBinding) and CRUD contract through interface. The interface is decorated using WebGet and WebInvoke attributes. WCF configuration file created using XML tags for use with REST web service.

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