scholarly journals Author response: Deconstruction of the beaten Path-Sidestep interaction network provides insights into neuromuscular system development

2017 ◽  
Author(s):  
Hanqing Li ◽  
Ash Watson ◽  
Agnieszka Olechwier ◽  
Michael Anaya ◽  
Siamak K Sorooshyari ◽  
...  
2021 ◽  
Author(s):  
Kevin Sugier ◽  
Romuald Laso-Jadart ◽  
Benoit Vacherie ◽  
Jos Kafer ◽  
Laurie Bertrand ◽  
...  

Background: Copepods are among the most numerous animals, and play an essential role in the marine trophic web and biogeochemical cycles. The genus Oithona is described as having the highest density of copepods, and as being the most cosmopolite copepods. The Oithona male paradox describes the activity states of males, which are obliged to alternate between immobile and mobile phases for ambush feeding and mate searching, respectively, while the female is typically less mobile and often feeding. To characterize the molecular basis of this sexual dimorphism, we combined immunofluorescence, genomics, transcriptomics, and protein-protein interaction approaches. Results: Immunofluorescence of β3- and α-tubulin revealed two male-specific nervous ganglia in the lateral first segment of the Oithona nana male's prosome. In parallel, transcriptomic analysis showed male-specific enrichment for nervous system development-related transcripts. Twenty-seven Lin12-Notch Repeat domain-containing protein coding genes (LDPGs) of the 75 LDPGs identified in the genome were specifically expressed only in males. Furthermore, most of the LDPGs (27%) coded for proteins having predicted proteolytic activity, and non-LDPG proteolysis-associated transcripts showed a male-specific enrichment. Using yeast double-hybrid assays, we constructed a protein-protein interaction network involving two LDPs with proteases, extracellular matrix proteins, and neurogenesis-related proteins. Conclusions: For the first time, our study describes the lateral nervous ganglia of O. nana males, unique to copepods. We also demonstrated a role of LDPGs and their associated proteolysis in male-specific physiology, and we hypothesize a role of the LDPGs in the development of the lateral ganglia through directed lysis of the extracellular matrix for the growth of neurites and genesis of synapses.


Biology ◽  
2021 ◽  
Vol 10 (7) ◽  
pp. 657
Author(s):  
Kevin Sugier ◽  
Romuald Laso-Jadart ◽  
Benoît Vacherie ◽  
Jos Käfer ◽  
Laurie Bertrand ◽  
...  

Copepods are among the most numerous animals, and they play an essential role in the marine trophic web and biogeochemical cycles. The genus Oithona is described as having the highest density of copepods. The Oithona male paradox describes the activity states of males, which are obliged to alternate between immobile and mobile phases for ambush feeding and mate searching, respectively, while the female is less mobile and feeds less. To characterize the molecular basis of this sexual dimorphism, we combined immunofluorescence, genomics, transcriptomics, and protein–protein interaction approaches and revealed the presence of a male-specific nervous ganglion. Transcriptomic analysis showed male-specific enrichment for nervous system development-related transcripts. Twenty-seven Lin12-Notch Repeat domain-containing protein coding genes (LDPGs) of the 75 LDPGs identified in the genome were specifically expressed in males. Furthermore, some LDPGs coded for proteins with predicted proteolytic activity, and proteases-associated transcripts showed a male-specific enrichment. Using yeast double–hybrid assays, we constructed a protein–protein interaction network involving two LDPs with proteases, extracellular matrix proteins, and neurogenesis-related proteins. We also hypothesized possible roles of the LDPGs in the development of the lateral ganglia through helping in extracellular matrix lysis, neurites growth guidance, and synapses genesis.


2018 ◽  
Vol 7 (2.13) ◽  
pp. 24 ◽  
Author(s):  
Nataliia N. Davydova ◽  
Evgeniy M. Dorozhkin ◽  
Vladimir A. Fedorov

Relevance. Modern society has global transformations; as a result, the level characteristics of its system development are changing, new opportunities and new situations to implement a self-organizing system to solve problems of self-government appear. Thus, there is the need to organize the multiplicity of interactions in the new environment, including education. The success of the development mechanisms, organizing innovative activities in the educational systems of different levels is largely determined by the active development of interaction network forms and interaction effective management. The article is devoted to development of theoretical ideas about the processes of network interaction in education to justify and describe the principles of modern scientific-educational network on the basis of system-synergetic approach. A leading approach to study this problem can be considered as system-synergetic which allows studying network interaction within the scientific and educational network as a holistic entity consisting of interrelated elements, structured and complex. The results of the study showed that described principles of effective networking and the conditions of scientific and educational networks development allow you to combine and re-combine the accumulated actors of this knowledge and practical experience interaction, turning them into the means of its innovative activities. The article can be useful to heads of educational institutions of different levels, as well as researchers of innovative processes development problems in education. 


2019 ◽  
Author(s):  
Robin J Vigouroux ◽  
Quénol Cesar ◽  
Alain Chédotal ◽  
Kim Tuyen Nguyen-Ba-Charvet

eLife ◽  
2018 ◽  
Vol 7 ◽  
Author(s):  
Francois M Lambert ◽  
Laura Cardoit ◽  
Elric Courty ◽  
Marion Bougerol ◽  
Muriel Thoby-Brisson ◽  
...  

In vertebrates, functional motoneurons are defined as differentiated neurons that are connected to a central premotor network and activate peripheral muscle using acetylcholine. Generally, motoneurons and muscles develop simultaneously during embryogenesis. However, during Xenopus metamorphosis, developing limb motoneurons must reach their target muscles through the already established larval cholinergic axial neuromuscular system. Here, we demonstrate that at metamorphosis onset, spinal neurons retrogradely labeled from the emerging hindlimbs initially express neither choline acetyltransferase nor vesicular acetylcholine transporter. Nevertheless, they are positive for the motoneuronal transcription factor Islet1/2 and exhibit intrinsic and axial locomotor-driven electrophysiological activity. Moreover, the early appendicular motoneurons activate developing limb muscles via nicotinic antagonist-resistant, glutamate antagonist-sensitive, neuromuscular synapses. Coincidently, the hindlimb muscles transiently express glutamate, but not nicotinic receptors. Subsequently, both pre- and postsynaptic neuromuscular partners switch definitively to typical cholinergic transmitter signaling. Thus, our results demonstrate a novel context-dependent re-specification of neurotransmitter phenotype during neuromuscular system development.


2017 ◽  
Author(s):  
F. M. Lambert ◽  
L. Cardoit ◽  
E. Courty ◽  
M. Bougerol ◽  
M. Thoby-Brisson ◽  
...  

ABSTRACTIn vertebrates, functional motoneurons are defined as differentiated neurons that are connected to a central premotor network and activate peripheral muscle using acetylcholine. Generally, motoneurons and muscles develop simultaneously during embryogenesis. However, during Xenopus metamorphosis, developing limb motoneurons must reach their target muscles through the already established larval cholinergic axial neuromuscular system. Here, we demonstrate that at metamorphosis onset, spinal neurons retrogradely labeled from the emerging hindlimbs initially express neither choline acetyltransferase nor vesicular acetylcholine transporter. Nevertheless, they are positive for the motoneuronal transcription factor Islet1/2 and exhibit intrinsic and axial locomotor-driven electrophysiological activity. Moreover, the early appendicular motoneurons activate developing limb muscles via nicotinic antagonist-resistant, glutamate antagonist-sensitive, neuromuscular synapses. Coincidently, the hindlimb muscles transiently express glutamate, but not nicotinic receptors. Subsequently, both pre- and postsynaptic neuromuscular partners switch definitively to typical cholinergic transmitter signaling. Thus, our results demonstrate a novel context-dependent re-specification of neurotransmitter phenotype during neuromuscular system development.


2019 ◽  
Author(s):  
Yaowei Li ◽  
Li Li

Abstract Background: Endometrial cancer is a common gynecological cancer whose incidence is increasing annually worldwide. However, the biomarkers that provide the prognosis and progression of endometrial cancer are still lacking. Methods: The differentially expressed mRNAs and miRNAs were screened out using mRNA and miRNA expression data of endometrial cancer from Gene Expression Omnibus, and then validated in the Cancer Genome Atlas. The Gene Ontology and Kyoto Encyclopedia of Genes and Genomes pathway enrichment analyses were conducted using the Database for Annotation,Visualization and Integrated Discovery. A protein–protein interaction network was constructed by STRING and visualized using Cytoscape. OncoLnc was used for studying the prognostic effects of the hub genes. In addition, miRecords were used to predict target genes of differentially expressed miRNAs, and then a miRNA-mRNA regulatory network was constructed. Results: Two eligible human endometrial cancer datasets ( GSE17025 and GSE25405) met the requirement. A total of 520 differentially expressed mRNAs and 30 differentially expressed miRNAs were identified. These differentially expressed mRNAs were mainly enriched in cell cycle, skeletal system development, vasculature development, oocyte maturation, and oocyte meiosis signaling pathways. 160 pairs of differentially expressed miRNAs and mRNAs, including 22 differentially expressed miRNAs and 71 overlapping differentially expressed mRNAs, were validated in endometrial cancer samples using starBase v2.0 project. And the prognosis analysis found that Cyclin E1 (CCNE1, one of the 82 hub genes, which was correlated with hsa-miR-195) was correlated with significantly worse overall survival in endometrial cancer patients. Conclusions: These hub genes and differentially expressed miRNAs might be used as molecular targets for the treatment of endometrial cancer and prognostic biomarkers for endometrial cancer.


2020 ◽  
Author(s):  
Yaowei Li ◽  
Li Li

Abstract Background: Endometrial cancer is a common gynecological cancer with annually increasing incidence worldwide. However, the biomarkers that provide prognosis and progression for this disease remain elusive. Methods: We analysed endometrial cancers mRNA and miRNA expression data from Gene Expression Omnibus, and searched for differentially expressed candidates, and subsequently validated them with the data from the Cancer Genome Atlas. The Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses were performed using the Database for Annotation, Visualization and Integrated Discovery (DAVID). A protein-protein interaction network was constructed by STRING and visualized using Cytoscape. The prognostic values of the identified hub genes were measured with OncoLnc. In addition, miRecords was used to predict target genes of differentially expressed miRNAs, and finally a miRNA-mRNA regulatory network was constructed.Results: Two eligible human endometrial cancer datasets (GSE17025 and GSE25405) were selected for the study. A total of 520 differentially expressed mRNAs and 30 differentially expressed miRNAs were identified. These mRNAs were mainly enriched in cell cycle, skeletal system development, vasculature development, oocyte maturation, and oocyte meiosis signalling pathways. A total of 160 pairs of differentially expressed miRNAs and mRNAs, including 22 differentially expressed miRNAs and 71 overlapping differentially expressed mRNAs, were validated in endometrial cancer samples using starBase v2.0 project. The prognosis analysis revealed that Cyclin E1 (CCNE1, one of the 82 hub genes, which correlated with hsa-miR-195 and hsa-miR-424) was significantly linked to a worse overall survival in endometrial cancer patients. Conclusions: The hub genes and differentially expressed miRNAs identified in this study might be used as prognostic biomarkers for endometrial cancer and molecular targets for its treatment.


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