microarray design
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2020 ◽  
Vol 5 (1) ◽  
Author(s):  
Jana Jezkova ◽  
Jade Heath ◽  
Angharad Williams ◽  
Deborah Barrell ◽  
Jessica Norton ◽  
...  

2019 ◽  
Vol 10 ◽  
pp. 2505-2515
Author(s):  
Seyed Mohammad Mahdi Dadfar ◽  
Sylwia Sekula-Neuner ◽  
Vanessa Trouillet ◽  
Hui-Yu Liu ◽  
Ravi Kumar ◽  
...  

The level of cancer biomarkers in cells, tissues or body fluids can be used for the prediction of the presence of cancer or can even indicate the stage of the disease. Alpha-fetoprotein (AFP) is the most commonly used biomarker for early screening and diagnosis of hepatocellular carcinoma (HCC). Here, a combination of three techniques (click chemistry, the biotin–streptavidin–biotin sandwich strategy and the use of antigen–antibody interactions) were combined to implement a sensitive fluorescent immunosensor for AFP detection. Three types of functionalized glasses (dibenzocyclooctyne- (DBCO-), thiol- and epoxy-terminated surfaces) were biotinylated by employing the respective adequate click chemistry counterparts (biotin–thiol or biotin–azide for the first class, biotin–maleimide or biotin–DBCO for the second class and biotin–amine or biotin–thiol for the third class). The anti-AFP antibody was immobilized on the surfaces via a biotin–streptavidin–biotin sandwich technique. To evaluate the sensing performance of the differently prepared surfaces, fluorescently labeled AFP was spotted onto them via microchannel cantilever spotting (µCS). Based on the fluorescence measurements, the optimal microarray design was found and its sensitivity was determined.


Gene ◽  
2013 ◽  
Vol 519 (1) ◽  
pp. 82-90 ◽  
Author(s):  
Hiromi Matsumae ◽  
Mayuko Hamada ◽  
Manabu Fujie ◽  
Yoshihito Niimura ◽  
Hiroshi Tanaka ◽  
...  

2012 ◽  
Author(s):  
Anne Bergstrom Lucas ◽  
Vinayak Kulkarni ◽  
Emily LeProust ◽  
Maithreyan Srinivasan ◽  
Stephanie Fulmer-Smentek

Author(s):  
Kathleen F. Kerr

We discuss the definition and application of design criteria for evaluating the efficiency of 2-color microarray designs. First, we point out that design optimality criteria are defined differently for the regression and block design settings. This has caused some confusion in the literature and warrants clarification. Linear models for microarray data analysis have equivalent formulations as ANOVA or regression models. However, this equivalence does not extend to design criteria. We discuss optimality criterion, and argue against applying regression-style D-optimality to the microarray design problem. We further disfavor E- and D-optimality (as defined in block design) because they are not attuned to scientific questions of interest.


2012 ◽  
Vol 3 (1) ◽  
pp. 42 ◽  
Author(s):  
Giorgio Cattoretti ◽  
Pasquale De Blasio ◽  
Stefano Faggi ◽  
Maurizio Falavigna ◽  
Paolo Forlani ◽  
...  

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