Comparing the efficiency of monofilament and regular nets for capturing bats

Regular nylon or polyester mist nets used for capturing bats have several drawbacks, particularly that they are inefficient at sampling insectivorous species. One possible alternative is to use monofilament nets, whose netting is made of single strands of yarn instead of several as regular nets, making them less detectable. To date, only one study has quantified the differences in capture rates between monofilament and regular mist nets for the study of bats, yet surprisingly, its findings suggest that the latter are more efficient than the former. Here, we provide further evidence of the differences in sampling efficiency between these two nets. We captured 90 individuals and 14 species in regular nets and 125 individuals and 20 species in monofilament nets. The use of monofilament nets increased overall capture rates, particularly for insectivorous species. Species accumulation curves indicate that samples based on regular nets are significantly underestimating species diversity, most notably as these nets fail at sampling rare species. We show that incorporating monofilament nets into bat studies offers an opportunity to expand records of different guilds and rare bat species and to improve our understanding of poorly known bat assemblages while using a popular, relatively cheap and portable sampling method.

Comparing the efficiency of monofilament and traditional nets for capturing bats

Traditional mist nets used for capturing bats have several drawbacks, particularly that they are inefficient at sampling many insectivorous species. One possible alternative is to use monofilament nets, whose netting is made of single strands of yarn instead of several as regular nets, making them less detectable. To date, no study has quantified the capture efficiency of monofilament nets compared to regular mist nets for the study of bats. Here we compare capture efficiency of monofilament and regular mist nets, focusing on bat abundance and species diversity at a lowland tropical forest in southwestern Costa Rica. During our sampling period, we captured 90 individuals and 14 species in regular nets and 125 individuals and 20 species in monofilament nets. The use of monofilament nets increased overall capture rates, but most notably for insectivorous species. Species accumulation curves indicate that samples based on regular nets are significantly underestimating species diversity, most notably as these nets fail at sampling rare species. We show that incorporating monofilament nets into bat studies offers an opportunity to expand records of different guilds and rare bat species and to improve our understanding of poorly-known bat assemblages while using a popular, relatively cheap and portable sampling method.

Species diversity and abundance patterns of epiphytic orchids in Aralam Wildlife Sanctuary in Kerala, India

Species diversity and abundance patterns of epiphytic orchids were studied in Aralam Wildlife Sanctuary, in the Western Ghats of northern Kerala. Habitats sampled were wet evergreen (EVEG), montane wet evergreen (MEVG), moist deciduous (MDEC), and semi evergreen (SEVG), on a gradient of altitude from 60 to 1,589 m. Selective tree scanning on linear line transects was deployed (n= 40) across spatial units. A total of 39 orchid species were recorded. Rarefied species richness was maximum in the EVEG (20) habitat. Best suited rank abundance models were analysed for epiphytic orchids in each habitat and checked for significant differences. Bootstrap and Jackknife-1 estimators and species accumulation curves suggested higher species richness than observed, therefore more effort in sampling was needed in order to record all epiphytic orchids of the area. The difference in species richness between habitat types was not statistically significant (ANOVA). 38% of recorded epiphytic orchid species were endemic.

Life in the Canopy: Using Camera-Traps to Inventory Arboreal Rainforest Mammals in Borneo

Arboreal mammals form a diverse group providing ecologically important functions such as predation, pollination and seed dispersal. However, their cryptic and elusive nature, and the heights at which they live, makes studying these species challenging. Consequently, our knowledge of rainforest mammals is heavily biased towards terrestrial species, limiting our understanding of overall community structure and the possible impacts of human-induced disturbance. We undertook the first in-depth appraisal of an arboreal mammal community in Southeast Asia, using camera-traps set in unlogged and logged tropical rainforest in Sabah, Borneo. Using paired canopy and terrestrial camera-traps at 50 locations (25 in unlogged forest, 25 in logged), we assessed the effectiveness of camera-trapping at characterising the arboreal versus terrestrial community, and tested the influence of strata and forest type on community structure and composition. The paired design detected 55 mammal species across 15,817 camera-trap nights (CTNs), and additional canopy sampling in a subset of trees added a further two arboreal species to the inventory. In total, thirty species were detected exclusively by terrestrial camera-traps, eighteen exclusively by canopy camera-traps, and nine by units set at both heights, demonstrating significant differences between arboreal and terrestrial communities. This pattern was strongest in unlogged forest, reflecting greater structural diversity of this habitat, but held in logged forest as well. Species accumulation curves revealed that canopy camera-trapping significantly boosted species inventories compared to terrestrial-only sampling, and was particularly effective at detecting gliding mammals, rodents and primates. Canopy inventories took longer to reach an asymptote, suggesting that a greater sampling effort is required when deploying canopy camera-traps compared to those set on the ground. We demonstrate that arboreal mammals in Borneo’s rainforest form a diverse and distinct community, and can be sampled effectively using canopy camera-traps. However, the additional costs incurred by sampling in the canopy can be substantial. We provide recommendations to maximise sampling effectiveness, while bringing down costs, to help encourage further study into one of the last frontiers of tropical forest research.

Species-rich bark and ambrosia beetle fauna (Coleoptera, Curculionidae, Scolytinae) of the Ecuadorian Amazonian Forest Canopy

Canopy fogging was used to sample the diversity of bark and ambrosia beetles (Coleoptera, Curculionidae, Scolytinae) at two western Amazonian rainforest sites in Ecuador. Sampling was conducted by Dr Terry Erwin and assistants from 1994–2006 and yielded 1158 samples containing 2500 scolytine specimens representing more than 400 morphospecies. Here, we analyze a subset of these data representing two ecological groups: true bark beetles (52 morphospecies) and ambrosia beetles (69 morphospecies). A high percentage of these taxa occurred as singletons and doubletons and their species accumulation curves did not reach an asymptote. Diversity estimates placed the total scolytine species richness for this taxon subset present at the two sites between 260 and 323 species. The α-diversity was remarkably high at each site, while the apparently high β-diversity was an artifact of undersampling, as shown by a Monte Carlo resampling analysis. This study demonstrates the utility of canopy fogging for the discovery of new scolytine taxa and for approximate diversity assessment, but a substantially greater sampling effort would be needed for conclusive alpha as well as beta diversity estimates.

A Mega-Nourishment (Sand Motor) Affects Landscape Diversity of Subtidal Benthic Fauna

The Sand Motor is a very large (20 million m3) nourishment constructed along the coast in The Netherlands. The huge volume of sand is redistributed along the coast by natural forces stemming from tidal currents and waves. For environmental evaluation of this large construction, the benthic subtidal fauna has been sampled prior to the construction of the Sand Motor, and at 1, 2, 4, and 6 years after construction. Although some significant differences between years were detected, overall the total density, total biomass and average number of species per sample were surprisingly constant over this time period. However, large differences were found in the species accumulation curves over samples, and in the rank-biomass and rank-abundance plots. These were related to two important trends in the communities. First, the invasive mollusk Ensis leei, the biomass dominant in the years before construction of the Sand Motor, dwindled in importance in later years. Recruitment of the species failed, but it is unclear whether, and how, this is related to the construction of the Sand Motor. Second, the correlation structure between depth, grain size, bottom shear stress due to waves and currents, which is very tight along a linear coast, was disrupted by the Sand Motor. The community composition was shown to depend strongly on these physical factors. The nature of the dependencies did not change, but the range of different combinations of factors after construction of the Sand Motor was widely larger than before. Although samples had similar number of species per sample before and after construction, the average difference between samples after construction was much larger than before. The Sand Motor is a very large construction, leading to loss of a substantial area (order 100 ha) of submarine area, which recovers at a long time scale. Total disturbance of benthos by burial, expressed as area∗(time before full recovery) was shown to be similar for the Sand Motor and for other coastal nourishment schemes when expressed per unit volume of sediment applied. However, in contrast to beach and shoreface nourishments, the Sand Motor led to a habitat diversification in the coastal zone.

Saprophytic flies in impacted areas of the Belo Monte Dam, Pará, Brazil (Diptera: Mesembrinellidae, Neriidae, Ropalomeridae, and Sarcophagidae): community composition, abundance, and species richness

The present study aims to document the community composition, abundance, and species richness of saprophytic fly species (Mesembrinellidae, Neriidae, Ropalomeridae, and Sarcophagidae) of the Volta Grande region of the Xingu River, a poorly sampled area impacted by the Belo Monte hydroelectric dam. Five collecting trips were carried out between 2014 and 2016, when traps baited with fermenting bananas were used. A total of 154 specimens, three genera, and six species were collected of Mesembrinellidae; 196 specimens, three genera, and seven species of Neriidae; 272 specimens, three genera, and six species of Ropalomeridae; and 624 specimens, 22 species and 10 genera of Sarcophagidae. Species accumulation curves for all families except Sarcophagidae demonstrated a strong tendency towards stabilization, showing that sampling efforts were sufficient to record most of the targeted species. Laneela perisi (Mariluis, 1987) (Mesembrinellidae) is a new record for the state of Pará. Among Ropalomeridae, Apophorhynchus amazonensisPrado, 1966, is a new record for Pará. Among Sarcophagidae, Helicobia aurescens (Townsend, 1927) is newly recorded from the Brazilian Amazon, and Ravinia effrenata (Walker, 1861) and Titanogrypa larvicida (Lopes, 1935) are new records for Pará.

Advanced survey effort required to obtain bat assemblage data in temperate woodlands (Chiroptera)

There is a lack of precise guidelines concerning the survey effort required for advanced bat surveys in temperate European woodlands, resulting in a lack of standardisation in survey methods. In this study we assess catch data from 56 bat trapping surveys at 11 UK woodland sites in order to provide recommendations for mist net survey effort required to gain meaningful bat assemblage data in temperate woodlands. Species accumulation curves were produced and were used to develop two novel values for survey effort: the minimum survey threshold (MST), whereby surveyors are more likely than not to encounter less dominant species; and the known species threshold (KST), the point where a given percentage (in our case, 75%) of the known species assemblage for a site is likely to be reached and beyond which there are diminishing returns for survey effort. For our data, the mean of MST was 17.4 net hours, and for KST, the mean was 29.8 net hours. The MST and KST values were reached during the second and third surveys, respectively. These proposed values are adaptable based on location and known species assemblage and may be used for planning advanced bat surveys in temperate woodlands not only to maximise survey efficacy and use of limited resources but to ensure ethical viability of undertaking advanced surveys in the first place.

Investigating temporal and spatial variation of eDNA in a nearshore rocky reef environment

Environmental DNA (eDNA) is increasingly used to measure biodiversity of marine ecosystems. However, key aspects of spatial and temporal dynamics of eDNA remain unknown. Particularly, it is unclear how long eDNA signals persist locally in dynamic marine environments, since degradation rates have predominantly been quantified through mesocosm studies. To determine in situ eDNA residence times, we introduced an eDNA signal from a non-native fish into a Southern California rocky reef ecosystem, and then measured changes in both introduced and background eDNA signals over 96 hours. Foreign eDNA signal could no longer be detected 7.5 hours after introduction, far exceeding disappearance rates quantified in laboratory studies. In addition, native vertebrate eDNA signals varied greatly over the 96 hours of observation, but time of day and tidal direction did not drive this variation in community structure. Species accumulation curves showed that standard sampling protocols using 3 replicate 1 L sea water samples were insufficient to capture full diversity of local marine vertebrates, capturing only 76% of all taxa. Despite this limitation, a single eDNA sample captured greater vertbrate diversity than 18 SCUBA based underwater visual transect surveys conducted at a nearby site. There was no significant difference in species richness between temporal replicates and spatial replicates, suggesting a space for time substitution may be effective for fully capturing the diversity of local marine vertebrate communities in nearshore rocky reef environments. This result is particularly important in designing eDNA metabarcoding sampling protocols to capture local marine species diversity.