Summer Oxygen Dynamics on a Southern Arabian Gulf Coral Reef

During the summer the Arabian Gulf is the world's warmest sea, also characterized by hypersalinity and extreme annual temperature fluctuations (12–35oC), making it marginal for coral growth. Yet extensive reefs occur in all eight nations bordering the Gulf. Here we present data demonstrating recurrent summer hypoxia events [oxygen concentration (O2) <2 mg l−1] at a reef in the southern Gulf. Currently these episodes are short enough (median 3 h, max 10 h) to preclude mass mortality. Will this always be the case? Predicting future Gulf hypoxia risk for coral reef ecosystems requires diagnosing the underlying causes driving the timing and magnitude of O2 swings. To this end, we compare our data with the output of a simple coupled 1-D water column/biogeochemical model of the reef environment. This allows us to give quantitative estimates of the O2 fluxes produced by photosynthesis both in the water column and within the coral framework, by respiration processes in the benthos, and from the atmosphere. We demonstrate the role of turbulent mixing, and in particular of tides, in shaping the temporal variability of the amplitude of the diel O2 cycle. We find that, in spite of significant turbulent mixing, which maintains the temperature vertically well-mixed, the biological O2 production and consumption is dominant over the atmospheric O2 flux, and is sufficient to generate vertical differences of 1 to 5 mg l−1 between the bottom and 1.5 m above it. While estimating future trends of hypoxia frequency will require further study, the present findings single out the relevant physical and biological processes (and their interplay) which deserve further scrutiny. The Gulf today experiences temperatures expected to occur across much of the tropics by the end of the century, and the observation of recurrent hypoxia events in the Gulf suggests that similar hypoxic phenomena may represent an important, but to date underappreciated, threat to the future of global coral reefs.

Late Carboniferous biota from the Ljubija iron mine area, Bosnia and Herzegovina

The Olistostrome member of the Sana-Una Paleozoic complex of the Ljubija ore mine in Bosnia and Herzegovina contains limestone fragments of pebble to block size that have been examined paleontologically. The recovered conodont fauna of the first sample is characterized by the species Declinognathodus lateralis, Idiognathoides sulcatus sulcatus and Idiognathodus sp. confirming its mid-Bashkirian age. This report is the first on the occurrence of these taxa in the area. The second sample with chaetetid demosponges yields an abundant diversified microbiota consisting of cyanobacteria, algae and foraminifera. Chlorophyts are marked by the common siphonoclad occurrence of Donezella lutugini and D. lunaensis, whereas rhodophyts include rare representatives of Stacheia, Stacheoides, Pseudoungdarella and Masloviporidium. The presence of Asphaltinella horowitzi and Aphralysia carbonaria of unclear taxonomic position is also documented. Pseudostaffellids, eostaffellids and other foraminifera, mostly endothyrids are present. The examined associations of fossils point to the Bashkirian age of the primary rock that originated in a very shallow habitat most probably linked to a high-energy reef environment.

Plastic responses in the coral Pocillopora acuta to extreme low-light conditions with and without food provision

This study examines phenotypically plastic responses in Pocillopora acuta collected from a highly urbanized reef environment to extreme low-light conditions. While among-species differences in how corals cope with low light are well documented, much less is known about within-species responses. It also remains unclear how extreme low light and provision of food may interact and influence coral physiology. Clonal fragments from six colonies (genotypes) of P. acuta were subjected to two light treatments with mean midday irradiances of 4 and 40 μmol photons m−2 s−1 photosynthetically active radiation (PAR), representing just 0.5 and 5% ambient light level, and were either fed with zooplankton or not fed for nine days. Corals maintained in 4 PAR had lower endosymbiont density but higher cellular chlorophyll a concentration than those in 40 PAR. Feeding rates were similar in both light treatments and had no significant effects on endosymbiont density and chlorophyll a concentrations. While genotypes varied in the level of phenotypic plasticity expressed for both photoacclimation and heterotrophy, most displayed similar directions in their responses, indicating photoacclimation in P. acuta is broadly predictable. Our study demonstrates that P. acuta from Singapore is able to acclimate to very low-light conditions by adjusting their photophysiology, providing additional evidence that this species is resilient to urbanization-related stress.

Ancillary data from animal-borne cameras as an ecological survey tool for marine communities

Underwater visual surveys represent an essential component of coastal marine research and play a crucial role in supporting the management of marine systems. However, logistical and financial considerations can limit the availability of survey data in some systems. While biologging camera tag devices are being attached to an increasing diversity of marine animals to collect behavioral information about the focal species, the ancillary imagery collected can also be used in analytical techniques developed for diver-based surveys. We illustrate this approach by extracting ancillary data from shark-borne camera tag deployments focused on the behavior of a White shark (Carcharodon carcharias) off Gansbaai, South Africa, and a Grey Reef shark (Carcharhinus amblyrhynchos) within the Chagos Archipelago. Within the giant kelp forest environment of Gansbaai we could determine the spatial density of kelp thali and underlying substrate composition. Within the coral reef environment, the animal-borne video allowed us to determine the approximate percent and type of benthic cover, as well as growth form and genus of corals down to the upper mesophotic zone. We also enumerated fish species-level abundance over reef flat and wall environments. We used established dive-survey methods to analyze video data and found the results to be broadly comparable in the two systems studied. Our work illustrates the broad applicability of ancillary animal-borne video data, which is analogous in type and quality to diver-based video data, for analysis in established marine community survey frameworks. As camera tags and associated biologging technologies continue to develop and are adapted to new environments, utilising these data could have wide-ranging applications and could maximise the overall cost–benefit ratio within biologging deployments.

Differential Symbiodiniaceae Association With Coral and Coral-Eroding Sponge in a Bleaching Impacted Marginal Coral Reef Environment

Marginal reefs are known for severe stress-inducible perturbations such as high sedimentation, eutrophication, ocean warming, and acidification from anthropogenic climate change. The corals striving in such stressful environments develop physiological adaptations induced by differential genomic expressions or association with thermal stress-tolerant algal symbionts (Symbiodiniaceae). Despite such adaptations, corals are threatened by other space competitors such as algae and sponges. Coral-eroding sponges belonging to the Cliona viridis complex are one such space competitors that also associate with Symbiodiniaceae algal photosymbiont. The diversity of Symbiodiniaceae associates with the coral and sponge from the same ecosystems is scarcely known. In the present study, Symbiodiniaceae community structure in the coral Turbinaria mesenterina, a newly described coral-eroding sponge Cliona thomasi, and their surrounding seawater was determined from the nearshore marginal reef along the central west coast of India. The results revealed a significantly higher relative abundance of Durusdinium and Gerakladium than Symbiodinium and Cladocopium in the seawater. Interestingly, both investigated host species showed differential Symbiodiniaceae association with significantly higher abundance of Durusdinium in coral and Gerakladium in sponge. The beta diversity analysis by Permutational multivariate analysis of variance (PERMANOVA) confirmed significant differences in Symbiodiniaceae profiles between sponge and coral. Durusdinium and Gerakladium are thermotolerant genera known to associate with different hosts in suboptimal conditions. Our field surveys suggested the bleaching resistance of the coral T. mesenterina despite the fact that the sea surface temperature reached the coral thermal threshold of 31°C during different periods of the years 2015, 2016, 2017, 2018, and 2019. Therefore, the thermal tolerance of the investigated coral and sponge species may be attributed to their respective thermotolerant photosymbiont associations. Furthermore, the results also indicated the host-specific photosymbiont selection from the local environment. Although these observations provide valuable biological insight, more research is needed to understand the tripartite association of sponge-coral-symbiont together to evaluate the competitive fitness of holobionts.

Short-lived detection of an introduced vertebrate eDNA signal in a nearshore rocky reef environment

Environmental DNA (eDNA) is increasingly used to measure biodiversity of marine ecosystems, yet key aspects of the temporal dynamics of eDNA remain unknown. Of particular interest is in situ persistence of eDNA signals in dynamic marine environments, as eDNA degradation rates have predominantly been quantified through mesocosm studies. To determine in situ eDNA residence times, we introduced an eDNA signal from a non-native fish into a protected bay of a Southern California rocky reef ecosystem, and then measured changes in both introduced and background eDNA signals across a fixed transect over 96 hours. Foreign eDNA signal was no longer detected only 7.5 hours after introduction, a time substantially shorter than the multi-day persistence times in laboratory studies. Moreover, the foreign eDNA signal spread along the entire 38 m transect within 1.5 hours after introduction, indicating that transport and diffusion play a role in eDNA detectability even in protected low energy marine environments. Similarly, native vertebrate eDNA signals varied greatly over the 96 hours of observation as well as within two additional nearby fixed transects sampled over 120 hours. While community structure did significantly change across time of day and tidal direction, neither accounted for the majority of observed variation. Combined, results show that both foreign and native eDNA signatures can exhibit substantial temporal heterogeneity, even on hourly time scales. Further work exploring eDNA decay from lagrangian perspective and quantifying effects of sample and technical replication are needed to better understand temporal variation of eDNA signatures in nearshore marine environments.