Molecular Investigation of Recurrent Streptococcus iniae Epizootics Affecting Coral Reef Fish on an Oceanic Island Suggests at Least Two Distinct Emergence Events

Streptococcus iniae is an emerging zoonotic pathogen of increasing concern for aquaculture and has caused several epizootics in reef fishes from the Caribbean, the Red Sea and the Indian Ocean. To study the population structure, introduction pathways and evolution of S. iniae over recurring epizootics on Reunion Island, we developed and validated a Multi Locus Sequence Typing (MLST) panel using genomic data obtained from 89 isolates sampled during epizootics occurring over the past 40years in Australia, Asia, the United States, Israel and Reunion Island. We selected eight housekeeping loci, which resulted in the greatest variation across the main S. iniae phylogenetic clades highlighted by the whole genomic dataset. We then applied the developed MLST to investigate the origin of S. iniae responsible for four epizootics on Reunion Island, first in inland aquaculture and then on the reefs from 1996 to 2014. Results suggest at least two independent S. iniae emergence events occurred on the island. Molecular data support that the first epizootic resulted from an introduction, with inland freshwater aquaculture facilities acting as a stepping-stone. Such an event may have been facilitated by the ecological flexibility of S. iniae, able to survive in both fresh and marine waters and the ability of the pathogen to infect multiple host species. By contrast, the second epizootic was associated with a distinct ST of cosmopolitan distribution that may have emerged as a result of environment disturbance. This novel tool will be effective at investigating recurrent epizootics occurring within a given environment or country that is despite the fact that S. iniae appears to have low genetic diversity within its lineage.

Larvae of the blue crab Callinectes sapidus Rathbun, 1896 (Decapoda: Brachyura: Portunidae) in the Balearic Archipelago (NW Mediterranean Sea)

The invasive blue crab Callinectes sapidus has been frequently recorded during the last years along the NW Mediterranean Sea, leading to established populations. Two megalopae of C. sapidus were found during two different oceanographic surveys in open waters of the Balearic Archipelago, in July 2005 and October 2011, previous to the first reference of adult specimens documented in the Balearic sub-basin. The analyzed environmental conditions of the sampling periods allowed us to hypothesize the likely introduction pathways, namely by maritime transport and surface currents. Furthermore, the recorded megalopae seem to enlarge the life history of C. sapidus in regard to its native area, where spawning peaks occur in late July and early August.

Alien, Naturalized and Invasive Plants in China

Invasive species are a subset of naturalized species, and naturalized species are a subset of alien species. Determining the relationship among these three assemblages would be helpful in predicting and preventing biological invasion. Here, we reviewed the families, lifeforms, origins, introduction pathways and phylogenetic diversity of alien, naturalized and invasive vascular plants in China. The results show that species in the Asteraceae, Fabaceae and Poaceae families had a high dominance among alien, naturalized and invasive species. Moreover, almost all alien species in the Amaranthaceae, Solanaceae, Convolvulaceae and Euphorbiaceae families became naturalized species, and about 26.7% of the naturalized species became invasive species. Perennial herbs comprised a higher proportion of alien species than did annual herbs, though annual herbs were more suited to becoming invasive than perennial herbs. A considerable proportion (57.8%) of invasive species were introduced from America. More than half (56.5%) of alien species were introduced for their ornamental value, and half of these have become naturalized in China. Moreover, about half (55.2%) of all invasive species were introduced for their economic value (including ornamental, foraging and medicinal purposes). Invasive species were phylogenetically clustered and phylogenetically distant from alien and naturalized species, which indicates that phylogenetic differences could be helpful in becoming invasive. There is no doubt that human activity plays a significant role in biological invasion. This study suggests that when introducing alien species to a region, decision-makers should certainly consider the species’ phylogeny, beyond just its fundamental characteristics.

Real-Time PCR Assays for Rapid Identification of Common Aphanomyces astaci Genotypes

The oomycete Aphanomyces astaci is the etiologic agent of crayfish plague, a disease that has seriously impacted the populations of European native crayfish species. The introduction of non-indigenous crayfish of North American origin and their wide distribution across Europe have largely contributed to spread of crayfish plague in areas populated by indigenous crayfish. Tracking A. astaci genotypes may thus be a useful tool for investigating the natural history of crayfish plague in its European range, as well as the sources and introduction pathways of the pathogen. In this study, we describe the development of real-time PCR TaqMan assays aiming to distinguish the five genotype groups of A. astaci (A–E) previously defined by their distinct RAPD patterns. The method was evaluated using DNA extracts from pure A. astaci cultures representing the known genotype groups, and from A. astaci-positive crayfish clinical samples collected mostly during crayfish plague outbreaks that recently occurred in Central Italy and Czechia. The assays do not cross-react with each other, and those targeting genotype groups A, B, D, and E seem sufficiently specific to genotype the pathogen from infected crayfish in the areas invaded by A. astaci (particularly Europe). The unusual A. astaci genotype “SSR-Up” documented from crayfish plague outbreaks in Czechia and chronically infected Pontastacus leptodactylus in the Danube is detected by the group B real-time PCR. The assay originally developed to detect group C (one not yet documented from crayfish plague outbreaks) showed cross-reactivity with Aphanomyces fennicus; the A. astaci genotype “rust1” described in the United States from Faxonius rusticus is detected by that assay as well. Analyses of additional markers (such as sequencing of the nuclear internal transcribed spacer or mitochondrial ribosomal subunits) may complement such cases when the real-time PCR-based genotyping is not conclusive. Despite some limitations, the method is a robust tool for fast genotyping of A. astaci genotype groups common in Europe, both during crayfish plague outbreaks and in latent infections.

Plant naturalization trends reflect socio-economic history and show a high likelihood of inter-island spread in Hawai‘i

The composition of non-native floras is influenced by a region’s socio-economic history, yet rarely are these factors studied alongside plant naturalization rates over time. Such information is especially critical for archipelagos, which often host large numbers of non-native plants and would benefit from preventing inter-island spread. We compiled the first record of occurrence and first record of naturalization for all naturalized plants in Hawai‘i alongside data on their origin, native climate types, taxonomy, and likely introduction pathway, and compared rates of naturalization with socio-economic trends. We found that the rate of total plant naturalizations has increased at a roughly constant rate during the past century without any sign of plateauing. However, this relatively steady increase is underlain by notable fluctuations in naturalization rates for different introduction pathways, with ornamentals increasing recently while agriculture-related plants have decreased. Furthermore, this trend mirrors a shift from an agriculture-dominated economy to a tourism-based one associated with increases in both resident and tourist populations as well as general economic well-being. We further found that the average naturalized species spreads at a rate of 1.86 islands per decade, eventually occupying most major islands in the archipelago, and the rate of spread appears to be increasing since Hawai‘i’s economic shift. Our findings also emphasize the diversity of Hawai‘i’s non-native flora, which originates from a variety of climates, continents, and taxonomic groups. We demonstrated that many non-native species have native ranges that include temperate climates, which is important because these climates typically co-occur with higher elevation, remnant patches of native-dominated ecosystems in Hawai‘i’. This study reveals trends that may help predict a species’ ability to naturalize and spread within and between islands, and we discuss management implications that may be extended to other regions.

Alien plants of Europe: introduction pathways, gateways and time trends

The Convention on Biological Diversity (CBD) pathways classification framework used in the implementation of the European Union’s (EU) Regulation 1143/2014 on invasive alien species (IAS Regulation) has recently been adopted by the European Alien Species Information Network (EASIN), the official information system supporting the implementation of the IAS Regulation. In the current paper, the result of an alignment of the primary introduction pathways of all alien plants in Europe included in the EASIN catalogue is presented, based on the CBD framework. In total, 6,250 alien plant taxa (marine plants excluded), both alien to Europe (native range outside Europe) and alien in Europe (native range partially in Europe) are reported. Altogether 5,175 plant taxa had their primary introduction pathway aligned based on the CBD framework, while for the rest the pathway remains unknown. In addition, the taxonomy, year and country of its first record in the wild are provided for each taxon. Our analyses reveal that the main primary introduction pathways of alien plants into Europe are linked to accidental escapes from ornamental and horticultural activities. Northwestern European countries seem to act as the main gateway areas of alien plants into Europe. Recent first observations of new alien taxa growing spontaneously exhibit a contemporary accelerating trend for plants alien to Europe, particularly linked to ornamental and horticultural activities. On the other hand, the number of new plants alien in Europe seems to have stabilized over the last few decades. The present work can assist in the prioritization of introduction pathways control, with the target of slowing down the rate of alien plants introductions into Europe, following also the requirements of the IAS Regulation.

Pathogens co-transported with invasive non-native aquatic species: implications for risk analysis and legislation

Invasive Non-Native Species (INNS) can co-transport externally and internally other organisms including viruses, bacteria and other eukaryotes (including metazoan parasites), collectively referred to as the symbiome. These symbiotic organisms include pathogens, a small minority of which are subject to surveillance and regulatory control, but most of which are currently unscrutinised and/or unknown. The (putatively) pathogenic symbionts co-transported by an INNS host may be latent or associated with asymptomatic infection and unable to cause disease in the INNS, but may be opportunistic pathogens of other hosts, causing impact to one or more hosts in their new range. These pathogens potentially pose diverse risks to other species, with implications for increased epidemiological risk to agriculture and aquaculture, wildlife/ecosystems, and human health (zoonotic diseases). Aquatic INNS and their symbionts have many introduction pathways, including commodity and trade (releases, escapes, contaminant), transport (stowaway), and dispersal (corridor, unaided). The risks and impacts arising from co-transported pathogens, including other symbionts of unknown pathogenic virulence, remain largely unexplored, unlegislated, and difficult to identify and quantify. Here, we propose a workflow to determine any known and potential pathogens of aquatic INNS. This workflow acts as a prerequisite for assessing the nature and risk posed by co-transported symbionts of INNS. A better understanding of co-transported organisms, the risks they pose and their impact, is necessary to inform policy and INNS risk assessments. This leap in evidence will be instrumental to devise an appropriate set of statutory responsibilities with respect to these symbionts, and to underpin new and more effective legislative processes relating to the disease screening and risk assessment of INNS.

Species on the move: Stowaways and contaminants cause the greatest economic impacts

Introduction pathways play a pivotal role in the success of Invasive Alien Species (IAS) – the subset of alien species that have a negative environmental and/or socio-economic impact. Pathways refer to the fundamental mechanism that leads to the introduction of a species outside of its native range – marking the beginning of all alien species invasions. Increased knowledge of pathways is essential to help reduce the flow and impacts of IAS and ultimately improve their management. Here we use the InvaCost database, a comprehensive repository on the global monetary impacts of invasive alien species, combined with the CBD hierarchical classification of introduction pathways to address four key questions: (i) Are particular IAS introduction pathways economically impactful? (ii) How are costs taxonomically and spatially distributed across pathways? (iii) Are there differences in costs between species introduced intentionally and unintentionally? and (iv) is there a relationship between the number of possible introduction pathways of IAS and their costs? We found first that both the total and average cost of species introduced through ‘Stowaways’ (US$144.9bn; US$89.4m) and ‘Contaminants’ pathways (US$99.3bn; US$158.0m) were more costly than species introduced primarily through ‘Escape’ (US$87.4bn; US$25.4m) and ‘Release’ (US$64.2bn; US$16.4m). Second, insects drove the costs of unintentional introductions whilst mammals drove the costs of intentional introductions; ‘Stowaways’ had the highest costs in Asia, Central America, North America and Diverse/Unspecified regions, whilst Antarctic-Subantarctic and Oceania incurred the greatest costs from species introduced through ‘Release’. Third, the cost of species introduced unintentionally is more than double the cost of species introduced intentionally ($192bn vs. $90bn). Equally, species introduced unintentionally cost more on average than species introduced intentionally in terms of damage, management, and mixed costs. Finally, the total and average cost of IAS was not related to their number of introduction pathways. Our findings provide important material for the targeting of priority pathways - something that will be critical in prioritising limited management budgets to combat the current acceleration of species invasions.