Evalutation of Turbo Decoder Performance Through Software Reference Model

Turbo encoder and decoder are two important blocks of long-term evolution (LTE) systems, as they address the data encoding and decoding in a communication system. In recent years, the wireless communication has advanced to suit the user needs. The power optimization can be achieved by proposing early termination of decoding iteration where the number of iterations is made adjustable which stops the decoding as it finishes the process. Clock gating technique is used at the RTL level to avoid the unnecessary clock given to sequential circuits; here clock supplies are a major source of power dissipation. The performance of a system is affected due to the numbers of parameters, including channel noise, type of decoding and encoding techniques, type of interleaver, number of iterations, and frame length on the Matlab Simulink platform. A software reference model for turbo encoder and decoder are modeled using MATLAB Simulink. Performance of the proposed model is estimated and analyzed on various parameters like frame length, number of iterations, and channel noise.

Comparisons of Speech Parameterisation Techniques for Classification of Intellectual Disability Using Machine Learning

Classification of intellectually disabled children through manual assessment of speech at an early age is inconsistent, subjective, time-consuming and prone to error. This study attempts to classify the children with intellectual disabilities using two speech feature extraction techniques: Linear Predictive Coding (LPC) based cepstral parameters, and Mel-frequency cepstral coefficients (MFCC). Four different classification models: k-nearest neighbour (k-NN), support vector machine (SVM), linear discriminant analysis (LDA) and radial basis function neural network (RBFNN) are employed for classification purposes. 48 speech samples of each group are taken for analysis, from subjects with a similar age and socio-economic background. The effect of the different frame length with the number of filterbanks in the MFCC and different frame length with the order in the LPC is also examined for better accuracy. The experimental outcomes show that the projected technique can be used to help speech pathologists in estimating intellectual disability at early ages.

Profile hidden Markov model sequence analysis can help remove putative pseudogenes from DNA barcoding and metabarcoding datasets

Background Pseudogenes are non-functional copies of protein coding genes that typically follow a different molecular evolutionary path as compared to functional genes. The inclusion of pseudogene sequences in DNA barcoding and metabarcoding analysis can lead to misleading results. None of the most widely used bioinformatic pipelines used to process marker gene (metabarcode) high throughput sequencing data specifically accounts for the presence of pseudogenes in protein-coding marker genes. The purpose of this study is to develop a method to screen for nuclear mitochondrial DNA segments (nuMTs) in large COI datasets. We do this by: (1) describing gene and nuMT characteristics from an artificial COI barcode dataset, (2) show the impact of two different pseudogene removal methods on perturbed community datasets with simulated nuMTs, and (3) incorporate a pseudogene filtering step in a bioinformatic pipeline that can be used to process Illumina paired-end COI metabarcode sequences. Open reading frame length and sequence bit scores from hidden Markov model (HMM) profile analysis were used to detect pseudogenes. Results Our simulations showed that it was more difficult to identify nuMTs from shorter amplicon sequences such as those typically used in metabarcoding compared with full length DNA barcodes that are used in the construction of barcode libraries. It was also more difficult to identify nuMTs in datasets where there is a high percentage of nuMTs. Existing bioinformatic pipelines used to process metabarcode sequences already remove some nuMTs, especially in the rare sequence removal step, but the addition of a pseudogene filtering step can remove up to 5% of sequences even when other filtering steps are in place. Conclusions Open reading frame length filtering alone or combined with hidden Markov model profile analysis can be used to effectively screen out apparent pseudogenes from large datasets. There is more to learn from COI nuMTs such as their frequency in DNA barcoding and metabarcoding studies, their taxonomic distribution, and evolution. Thus, we encourage the submission of verified COI nuMTs to public databases to facilitate future studies.

Device Free Detection in Impulse Radio Ultrawide Bandwidth Systems

In this paper, an analytical framework is presented for device detection in an impulse radio (IR) ultra-wide bandwidth (UWB) system and its performance analysis is carried out. The Neyman–Pearson (NP) criteria is employed for this device-free detection. Different from the frequency-based approaches, the proposed detection method utilizes time domain concepts. The characteristic function (CF) is utilized to measure the moments of the presence and absence of the device. Furthermore, this method is easily extendable to existing device-free and device-based techniques. This method can also be applied to different pulse-based UWB systems which use different modulation schemes compared to IR-UWB. In addition, the proposed method does not require training to measure or calibrate the system operating parameters. From the simulation results, it is observed that an optimal threshold can be chosen to improve the ROC for UWB system. It is shown that the probability of false alarm, PFA, has an inverse relationship with the detection threshold and frame length. Particularly, to maintain PFA<10−5 for a frame length of 300 ns, it is required that the threshold should be greater than 2.2. It is also shown that for a fix PFA, the probability of detection PD increases with an increase in interference-to-noise ratio (INR). Furthermore, PD approaches 1 for INR >−2 dB even for a very low PFA i.e., PFA=1×10−7. It is also shown that a 2 times increase in the interference energy results in a 3 dB improvement in INR for a fixed PFA=0.1 and PD=0.5. Finally, the derived performance expressions are corroborated through simulation.

Profile hidden Markov model sequence analysis can help remove putative pseudogenes from DNA barcoding and metabarcoding datasets

BackgroundPseudogenes are non-functional copies of protein coding genes that typically follow a different molecular evolutionary path as compared to functional genes. The inclusion of pseudogene sequences in DNA barcoding and metabarcoding analysis can lead to misleading results. None of the most widely used bioinformatic pipelines used to process marker gene (metabarcode) high throughput sequencing data specifically accounts for the presence of pseudogenes in protein-coding marker genes. The purpose of this study is to develop a method to screen for obvious pseudogenes in large COI metabarcode datasets. We do this by: 1) describing gene and pseudogene characteristics from a simulated DNA barcode dataset, 2) show the impact of two different pseudogene removal methods on mock metabarcode datasets with simulated pseudogenes, and 3) incorporate a pseudogene filtering step in a bioinformatic pipeline that can be used to process Illumina paired-end COI metabarcode sequences. Open reading frame length and sequence bit scores from hidden Markov model (HMM) profile were used to detect pseudogenes.ResultsOur simulations showed that it was more difficult to identify pseudogenes from shorter amplicon sequences such as those typically used in metabarcoding (∼300 bp) compared with full length DNA barcodes that are used in construction of barcode libraries (∼ 650 bp). It was also more difficult to identify pseudogenes in datasets where there is a high percentage of pseudogene sequences. We show that existing bioinformatic pipelines used to process metabarcode sequences already remove some apparent pseudogenes, especially in the rare sequence removal step, but the addition of a pseudogene filtering step can remove more.ConclusionsThe combination of open reading frame length and hidden Markov model profile analysis can be used to effectively screen out obvious pseudogenes from large datasets. There is more to learn from COI pseudogenes such as their frequency in DNA barcode and metabarcoding studies, their taxonomic distribution, and evolution. Thus, we encourage the submission of verified COI pseudogenes to public databases to facilitate future studies.

Comparisons of Speech Parameterisation Techniques for Classification of Intellectual Disability Using Machine Learning

Classification of intellectually disabled children through manual assessment of speech at an early age is inconsistent, subjective, time-consuming and prone to error. This study attempts to classify the children with intellectual disabilities using two speech feature extraction techniques: Linear Predictive Coding (LPC) based cepstral parameters, and Mel-frequency cepstral coefficients (MFCC). Four different classification models: k-nearest neighbour (k-NN), support vector machine (SVM), linear discriminant analysis (LDA) and radial basis function neural network (RBFNN) are employed for classification purposes. 48 speech samples of each group are taken for analysis, from subjects with a similar age and socio-economic background. The effect of the different frame length with the number of filterbanks in the MFCC and different frame length with the order in the LPC is also examined for better accuracy. The experimental outcomes show that the projected technique can be used to help speech pathologists in estimating intellectual disability at early ages.

Adaptive ML-Based Frame Length Optimisation in Enterprise SD-WLANs

Software-Defined Networking (SDN) is gaining a lot of traction in wireless systems with several practical implementations and numerous proposals being made. Despite instigating a shift from monolithic network architectures towards more modulated operations, automated network management requires the ability to extract, utilise and improve knowledge over time. Beyond simply scrutinizing data, Machine Learning (ML) is evolving from a simple tool applied in networking to an active component in what is known as Knowledge-Defined Networking (KDN). This work discusses the inclusion of ML techniques in the specific case of Software-Defined Wireless Local Area Networks (SD-WLANs), paying particular attention to the frame length optimization problem. With this in mind, we propose an adaptive ML-based approach for frame size selection on a per-user basis by taking into account both specific channel conditions and global performance indicators. By relying on standard frame aggregation mechanisms, the model can be seamlessly embedded into any Enterprise SD-WLAN by obtaining the data needed from the control plane, and then returning the output back to this in order to efficiently adapt the frame size to the needs of each user. Our approach has been gauged by analysing a multitude of scenarios, with the results showing an average improvement of 18.36% in goodput over standard aggregation mechanisms.