A Novel Pear Scab (Venturia nashicola) Resistance Gene, Rvn3, from Interspecific Hybrid Pear (Pyrus pyrifolia × P. communis)

Asian pear scab is a fungal disease caused by Venturia nashicola. The identification of genes conferring scab resistance could facilitate the breeding of disease-resistant cultivars. Therefore, the present study aimed to identify a scab-resistance gene using an interspecific hybrid population ((Pyrus pyrifolia × P. communis) × P. pyrifolia). Artificial inoculation of V. nashicola was carried out for two years. The segregation ratio (1:1) of resistant to susceptible individuals indicated that resistance to V. nashicola was inherited from P. communis and controlled by a single dominant gene. Based on two years phenotypic data with the Kruskal–Wallis test and interval mapping, 12 common markers were significantly associated with scab resistance. A novel scab resistance gene, Rvn3, was mapped in linkage group 6 of the interspecific hybrid pear, and co-linearity between Rvn3 and one of the apple scab resistance genes, Rvi14, was confirmed. Notably, an insertion in pseudo-chromosome 6 of the interspecific hybrid cultivar showed homology with apple scab resistance genes. Hence, the newly discovered Rvn3 was considered an ortholog of the apple scab resistance gene. Since the mapping population used in the present study is a pseudo-BC1 population, pyramiding of multiple resistance genes to pseudo-BC1 could facilitate the breeding of pear cultivars with durable resistance.

APPLE AND PEAR SCAB ONTOLOGY

An important issue in horticulture is ensuring plant disease, such as scab, prevention and treatment. Apple and pear are among the most widely grown (approximately 43% of all fruit tree area [1]) and economically important fruit crops specified worldwide and in Latvia. Scab diseases caused by ascomycetous fungi Venturia inaequalis and V.pyrina are economically the most important diseases worldwide. Research projects have produced research data covering various aspects of plant-pathogen interactions, but there is no internal linkage analysis, as well as implementation of other types of data (such as environmental and meteorological data, etc.). Establishing such a data integration system would allow the identification of new regularities in plant-pathogen interactions, and provide mechanisms for disease control decisions. Semantic analysis is one of information technology approaches to finding relationships in data. The product of analysis is ontology. There are plant disease ontologies which provide classification of diseases and describe their reasons. However, there is no ontology which describes a specific plant and relations among its farming parameters and disease probability. Such an ontology for apple and pear scab is presented in this paper. The constructed ontology can be applied to develop guidelines or digital expert systems.

Phenotypic and transcriptomic analyses reveal major differences between apple and pear scab nonhost resistance

Background: Nonhost resistance is the outcome of most plant/pathogen interactions, but it has rarely been described in Rosaceous fruit species. Apple (Malus x domestica Borkh.) is a nonhost for Venturia pyrina, the scab species attacking European pear (Pyrus communis L.). Reciprocally, P. communis is a nonhost for Venturia inaequalis, the scab species attacking apple. The major objective of our study was to compare the scab nonhost resistance in apple and in European pear, at the phenotypic and transcriptomic levels. Results: Macro- and microscopic observations after reciprocal scab inoculations indicated that, after a similar germination step, nonhost apple/V. pyrina interaction remained nearly symptomless, whereas hypersensitive reactions were observed during nonhost pear/V. inaequalis interaction. Comparative transcriptomic analyses of apple and pear nonhost interactions with V. pyrina and V. inaequalis, respectively, revealed considerable differences. Very few differentially expressed genes were detected during apple/V. pyrina interaction, which is consistent with a symptomless type I nonhost resistance. On the contrary, numerous genes were differentially expressed during pear/V. inaequalis interaction, as expected in a type II nonhost resistance involving visible hypersensitive reaction. Pre-invasive defense, such as stomatal closure, was detected, as well as several post-invasive defense mechanisms (apoplastic reactive oxygen species accumulation, phytoalexin production and alterations of the epidermis composition). In addition, a comparative analysis between pear scab host and nonhost interactions indicated that, although specificities were observed, two major defense lines were shared in these resistances: cell wall and cuticle modifications and phenylpropanoid pathway induction. Conclusion: This first deciphering of the molecular mechanisms underlying a nonhost scab resistance in pear offers new possibilities for the genetic engineering of sustainable scab resistance in this species.

Susceptibility of collection pear cultivars to the agent of scab pathogen Venturia pirina Aderh

The objective of the research is to study the biology of the pathogen of the scab Venturia pirina Aderh depending on the agrometeorological conditions of the pear vegetation and to assess the collection cultivars for susceptibility to the disease. The biological features of the pear scab in the western foothill agro-climatic region of the Crimea are studied. The influence of climatic conditions on the occurrence of various epidemiological types of scab manifestations on pears is estimated. As a result of the research, highly resistant cultivars were found: Zhukovka, Zaporozhskaya, Triumph of Jodoin, Vodyanistaya, Dorodnaya, Bere Shibasso, Martin Sekl, which showed moderate levels of infection spread in all years of research, with the development of the disease in the range of 0.2-1.3%. Immune cultivars of pears with absolute resistance to the pathogen agent V. pirina, which was not affected by changes in weather conditions, were identified. These cultivars are the following: Zimovka, Trapezitsa, Chervona, Shara Bera, Seyanets Kolossa, Populyarnaya, Kurzemskaya Maslyanaya, Wonderful Italy, which can be used in breeding and ecologized protection systems when supplying with cuttings horticultural industries in the Crimea and the south of Russia.

The Influence of Inducing Agents Applied by Soil Drenches on Disease Severity of Apple and Pear Scab

Apple and pear scab are foliar diseases of ornamental and fruiting apple and pear trees. Unmanaged, yield and aesthetic losses can be severe. Overreliance on synthetic fungicides means novel means of disease management are required. Field trials were conducted using apple (Malus cv. Crown Gold) and pear (Pyrus communis ‘Williams Bon Chrétien’) to assess the efficacy of a range of commercially available inducing resistance (IR) agents (harpin protein, potassium phosphite, salicylic acid derivative, and chitosan) as root drenches against both scab diseases. A synthetic fungicide (penconazole) spray program used within the UK for apple and pear scab control was included for comparison. Each IR agent was applied four times, (i) before the visible appearance of scab (April through June, i.e., preventatively) or (ii) after symptoms of scab were visibly observed (June through August, i.e., curatively). Limited efficacy as scab protectants was demonstrated when IR agents were applied curatively. Likewise, limited efficacy was recorded when IR agents were applied once or twice as a preventative measure. However, when IR agents were applied as root drenches greater or equal to three times, efficacy as scab protectants was confirmed (increased leaf chlorophyll content, increased fruit yield, reduced leaf and fruit scab severity). A synthetic fungicide penconazole spray program provided the greatest protection against apple and pear scab in all trials when sprayed preventatively rather than curatively. Results suggest application of at least three root drenches from April through June with an appropriate IR agent provides a useful addition to existing methods of apple and pear scab management under field conditions.

Whole Genome Sequence Resource of the Asian Pear Scab Pathogen Venturia nashicola

Venturia nashicola, the cause of scab disease of Asian pears, is a host-specific, biotrophic fungus. It is restricted to Asia and is regarded as a quarantine threat outside this region. European pear displays nonhost resistance (NHR) to V. nashicola and Asian pears are nonhosts of V. pyrina (the cause of European pear scab disease). The host specificity of these two fungi is likely governed by differences in their effector arsenals, with a subset hypothesized to activate NHR. The Pyrus-Venturia pathosystem provides an opportunity to dissect the underlying genetics of nonhost interactions in this potentially more durable form of resistance. The V. nashicola genome will enable comparisons to other Venturia spp. genomes to identify effectors that potentially activate NHR in the pear scab pathosystem.

Draft Genome Sequence of the Asian Pear Scab Pathogen, Venturia nashicola

Venturia nashicola, which causes scab disease of Asian pear, is a host-specific, biotrophic fungus, with a sexual stage that occurs during saprobic growth. V. nashicola is endemic to Asia and is regarded as a quarantine threat to Asian pear production outside of this continent. Currently, fungicide applications are routinely used to control scab disease. However, fungicide resistance in V. nashicola, as in other fungal pathogens, is an ongoing challenge and alternative control or prevention measures that include, for example, the deployment of durable host resistance, are required. A close relative of V. nashicola, V. pirina, causes scab disease of European pear. European pear displays non-host resistance (NHR) to V. nashicola and Asian pears are non-hosts of V. pirina. It is anticipated that the host specificity of these two fungi is governed by differences in their effector arsenals, with a subset responsible for activating NHR. The Pyrus-Venturia pathosystems provide a unique opportunity to dissect the underlying genetics of non-host interactions and to understand coevolution in relation to this potentially more durable form of resistance. Here, we present the first V. nashicola draft whole genome sequence (WGS), which is made up of 40,800 scaffolds (totalling 45 Mb) and 11,094 predicted genes. Of these genes, 1,232 are predicted to encode a secreted protein by SignalP, with 273 of these predicted to be effectors by EffectorP. The V. nashicola WGS will enable comparison to the WGSs of other Venturia spp. to identify effectors that potentially activate NHR in the pear scab pathosystems.