intersubtype recombination
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2017 ◽  
Vol 429 (14) ◽  
pp. 2246-2264 ◽  
Author(s):  
Bernard S. Bagaya ◽  
Meijuan Tian ◽  
Gabrielle C. Nickel ◽  
José F. Vega ◽  
Yuejin Li ◽  
...  

2013 ◽  
Vol 94 (4) ◽  
pp. 758-766 ◽  
Author(s):  
Cristian De Candia ◽  
Constanza Espada ◽  
Gabriel Duette ◽  
Horacio Salomón ◽  
Mauricio Carobene

We previously reported a naturally occurring BF intersubtype recombinant viral protein U (Vpu) variant with an augmented capacity to enhance viral replication. Structural analysis of this variant revealed that its transmembrane domain and α-helix I in the cytoplasmic domain (CTD) corresponded to subtype B, whereas the α-helix II in the CTD corresponded to subtype F1. In this study, we aimed to evaluate the role of the Vpu cytoplasmic α-helix II domain in viral release enhancement and in the down-modulation of BST-2 and CD4 from the cell surface. In addition, as serine residues in Vpu amino acid positions 61 or 64 have been shown to regulate Vpu intracellular half-life, which in turn could influence the magnitude of viral release, we also studied the impact of these residues on the VpuBF functions, since S61 and S64 are infrequently found among BF recombinant Vpu variants. Our results showed that the exchange of Vpu α-helix II between subtypes (B→F) directly correlated with the enhancement of viral release and, to a lesser extent, with changes in the capacity of the resulting chimera to down-modulate BST-2 and CD4. No differences in viral release and BST-2 down-modulation were observed between VpuBF and VpuBF-E61S. On the other hand, VpuBF-A64S showed a slightly reduced capacity to enhance viral production, but was modestly more efficient than VpuBF in down-modulating BST-2. In summary, our observations clearly indicate that α-helix II is actively involved in Vpu viral-release-promoting activity and that intersubtype recombination between subtypes B and F1 created a protein variant with a higher potential to boost the spread of the recombinant strain that harbours it.


2012 ◽  
Vol 87 (4) ◽  
pp. 1967-1973 ◽  
Author(s):  
M. J. Ward ◽  
S. J. Lycett ◽  
M. L. Kalish ◽  
A. Rambaut ◽  
A. J. Leigh Brown

2011 ◽  
Vol 8 (1) ◽  
pp. 512 ◽  
Author(s):  
Yassir M Eltahir ◽  
Kun Qian ◽  
Wenjie Jin ◽  
Aijian Qin

2010 ◽  
Vol 7 (1) ◽  
pp. 259 ◽  
Author(s):  
Cristian De Candia ◽  
Constanza Espada ◽  
Gabriel Duette ◽  
Yanina Ghiglione ◽  
Gabriela Turk ◽  
...  

Virology ◽  
2007 ◽  
Vol 363 (2) ◽  
pp. 437-446 ◽  
Author(s):  
Mario P.S. Chin ◽  
Jianbo Chen ◽  
Olga A. Nikolaitchik ◽  
Wei-Shau Hu

2006 ◽  
Vol 81 (6) ◽  
pp. 2999-3004 ◽  
Author(s):  
Jessica J. Hayward ◽  
John Taylor ◽  
Allen G. Rodrigo

ABSTRACT Nested PCR was used to amplify envelope V3-V6 gene fragments of feline immunodeficiency virus (FIV) from New Zealand cats. Phylogenetic analyses established that subtypes A and C predominate among New Zealand cats, with clear evidence of intersubtype recombination. In addition, 17 sequences were identified that were distinct from all known FIV clades, and we tentatively suggest these belong to a novel subtype.


2006 ◽  
Vol 34 (18) ◽  
pp. 5203-5216 ◽  
Author(s):  
Heather A. Baird ◽  
Román Galetto ◽  
Yong Gao ◽  
Etienne Simon-Loriere ◽  
Measho Abreha ◽  
...  

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