A reference genome for the critically endangered woylie, Bettongia penicillata ogilbyi

Biodiversity is declining globally, and Australia has one of the worst extinction records for mammals. The development of sequencing technologies means that genomic approaches are now available as important tools for wildlife conservation and management. Despite this, genome sequences are available for only 5% of threatened Australian species. Here we report the first reference genome for the woylie (Bettongia penicillata ogilbyi), a critically endangered marsupial from Western Australia, and the first genome within the Potoroidae family. The woylie reference genome was generated using Pacific Biosciences HiFi long-reads, resulting in a 3.39 Gbp assembly with a scaffold N50 of 6.49 Mbp and 86.5% complete mammalian BUSCOs. Assembly of a global transcriptome from pouch skin, tongue, heart and blood RNA-seq reads was used to guide annotation with Fgenesh++, resulting in the annotation of 24,655 genes. The woylie reference genome is a valuable resource for conservation, management and investigations into disease-induced decline of this critically endangered marsupial.

Influences of behaviour and physiology on body mass gain in the woylie (Bettongia penicillata ogilbyi) post-translocation

Context Temperament can affect an individual’s fitness and survival if it also influences behaviours associated with predator avoidance, interactions with conspecifics, refuge selection and/or foraging. Furthermore, temperament can determine an individual’s response to novel stimuli and environmental challenges, such as those experienced through translocation. Increasing our understanding of the effect of temperament on post-translocation fitness is thus necessary for improving translocation outcomes. Aims The aim was to test whether differences in an individual’s behaviour or physiology could help predict body mass changes post-translocation in the woylie (brush-tailed bettong, Bettongia penicillata ogilbyi). In the absence of predation (due to release into a predator-free exclosure), body mass was used as a proxy for an individual’s success in securing resources in the new habitat, and therefore fitness. Methods Forty woylies were translocated from two predator-free exclosures to a larger exclosure, all in Western Australia. Behavioural and physiological measures were recorded during trapping, processing, holding, and release, and again at re-capture ~100 days post-release. Key results Translocated woylies generally increased in body mass post-translocation. This suggests that, in the absence of predation, the selected candidates were able to cope with the stress of translocation and possessed the behavioural plasticity to successfully find resources and adapt to a novel environment. The strongest predictors of body mass gain were sex, heart rate lability and escape behaviour when released (a convoluted escape path). Conclusions There was no significant difference in body mass between males and females pre-translocation but females showed greater mass gain post-translocation than did males, which could reflect greater investment in reproduction (all females had pouch young). Heart rate lability and escape behaviour are likely to reflect reactivity or fearfulness, a significant temperament trait in the context of translocation success. Implications Behavioural measures that can be easily incorporated into the translocation process – without increasing stress or affecting welfare of individuals – may hold promise for predicting the fate of translocated animals.

Reversing functional extinction of mammals prompts a rethink of paradigms about seed fate in arid Australia

Functional extinction of once abundant species has frequently preceded understanding of their ecological roles. Consequently, our understanding of ecosystems is prone to shifting baselines because it often relies on observations made on depauperate species assemblages. In Australian deserts, current paradigms are that ants are the dominant granivores, mammals are unimportant seed predators and that myrmecochory in many Australian shrubs is an adaptation to increase dispersal distance and direct seeds to favourable germination sites. Here, we ask whether these paradigms could be artefacts of mammal extinction. We take advantage of a predator-proof reserve within which locally extinct native mammals have been reintroduced to compare seed removal by ants and mammals. Using foraging trays that selectively excluded mammals and ants we show that a reintroduced mammal, the woylie ( Bettongia penicillata ) was at least as important as ants in the removal of seeds of two shrub species ( Dodonaea viscosa and Acacia ligulata ). Our results provide evidence that the dominance of ants as granivores and current understanding of the adaptive benefit of myrmecochory in arid Australia may be artefacts of the functional extinction of mammals. Our study shows how reversing functional extinction can provide the opportunity to rethink contemporary understanding of ecological processes.

Interspecies co-use of southern hairy-nosed wombat (Lasiorhinus latifrons) burrows

Burrows can provide refuge for both burrowing and non-burrowing species within harsh environments through protection from climatic extremes, water loss and predation. In Australia, however, despite having a rich diversity of burrowing mammals, little is known about the use of burrows by non-burrowing species. This study aimed to identify the extent of co-use of southern hairy-nosed wombat (Lasiorhinus latifrons) burrows on Wedge Island off the coast of South Australia. Burrow use was monitored using 34 motion-activated cameras placed outside wombat burrows between March and September 2015. Eleven species were found to use burrows, with six commensal species observed using burrows on numerous occasions. These included two mammal species (black-footed rock-wallaby, Petrogale lateralis pearsoni; brush-tailed bettong, Bettongia penicillata), three reptile species (peninsula dragon, Ctenophorus fionni; southern sand-skink, Liopholis multiscutata; White’s skink, Liopholis whitii), and one avian species (little penguin, Eudyptula minor). The most common species observed using burrows was the black-footed rock-wallaby, which was recorded using burrows 1795 times. Observations of wombats using burrows were made 1674 times. The prevalent use of burrows on Wedge Island by species other than wombats is an observation with potentially important and broad ecological, conservation, and management implications across Australia’s arid and semiarid zones.