INVESTIGATION OF THE ALLELIC COMPOSITION OF THE MA-3 MICROSATELLITE LOCUS IN SABLE (MARTES ZIBELLINA L., 1758) OF THE MIDDLE AMUR REGION: ANALYSIS OF THE COLLECTIONS OF SUCCESSIVE HUNTING SEASONS

The authors investigated the allele microsatellite locus Ma-3 composition in the Middle Amur Region sable (Martes zibellina). Three subpopulations of animals from the Bureinsky Highlands (Magan, Sutyr and Kamenushka), as well as one from the western macro slope of the Sikhote-Alin ridge (Manoma) were analyzed. The genetic material was collected for the hunting seasons of 2011/2012 – 2017/2018. Subpopulations of the northern (Magan) and middle (Sutyr) parts of the Bureinsky ridge were most similar to each other in their allele composition In the subpopulation of the Bureinsky Highlands southern part (Kamenushka) some slight differences were found. In the Manoma subpopulation, the specific allele 129 was found in hunting catches of 2012-2013 and 2017-2018. The specific allele presence in this subpopulation has proved some geographic isolation between the Sikhote Alin and the Bureinsky Highlands sable populations.

Analysis of Glu-1 loci in samples of rare wheat species and their hybrides

Aim. Determination of the allelic composition of Glu-1 loci in samples of rare wheat species and their hybrids with spring bread wheat. Methods. PCR analysis. Results. In existing collection samples of the rare wheat species the alleles of the a/c loci Glu-A1 were found, while allele b was found only in T.dicoccum, var. volgense (Emmer Kokchetavskaya). An additional amplicon with a length of 450 bp was found in the Glu-A1 locus in the sample (T. dicoccum × Dasypyrum villosum), and in (Ae. ventricosa × T. dicoccum) another one a length of 700 bp in genome B, was found require further research. Among hexaploid wheat, it was revealed genotypes differing in the presence of alleles a and d of the locus Glu-D1. The hybridity of the received forms has been confirmed, as evidenced by the identification of both parent components in the hybrids or alleles of the Glu-D1 locus of bread wheat in hybrids with emmer. Conclusions. Analysis of the allele composition of Glu1 locuses in samples of rare wheat species and their hybrids with bread wheat allowed to select genotypes and hybrid combinations that may be promising for further breeding work. Keywords: Triticum spelta L., T. dicoccum, hybrids, PCR analysis, Glu-1 locus.

The allelic state of SNP-markers, specific for lancaster germpasm maize inbreds

Aim. To identify the alleles of SNP-markers specific for Lancaster germplasm maize inbreds, in comparison with inbreds of other germplasms. Methods. Analysis of single nucleotide polymorphism of DNA on 384 SNP-markers of BDI-IIIa panel with GoldenGate-test and reading system Illumina VeraCode. Results. The greatest difference between the frequencies of the same alleles in two groups of lines, on the level of D = 0.74, was fixed for SNPmarker BDI-IIIa-332. For markers which were selected according to ranking at D = 0.53–0.74 the range of frequencies of major alleles in the group of nonLancaster lines was 0.57–0.84. In the group of Lancaster lines frequencies of the same alleles decreased to 0.03–0.10. Missing alleles in the group of Lancaster lines and unique ones in nonLancaster lines for 16 SNP markers were identified. Conclusions. Allele composition of SNPmarkers of BDI-IIIa panel specific for Lancaster germplasm was defined as BDI-IIIa-332G, BDI-IIIa-151A, BDIIIIa-331T, BDI-IIIa-335C, BDI-IIIa-185C, BDI-IIIa-181C, BDI-IIIa-83C, BDI-IIIa-359G, BDI-IIIa-269G and BDI-IIIa- 96A. Dendrogram of phylogenetic relationships between maize lines of modern gene pool from breeding programs used in the Steppe zone of Ukraine based on the results of SNP-analysis indicates the closeness of the information on pedigree and SNP-analysis, but identifies genetic heterogeneity within Lancaster germplasm.Keywords: molecular markers, maize, Lancaster germplasm, line, single nucleotide polymorphism of DNA.

Allelic diversity of DQA2 exon 2 gene in Egyptian goat populations

The study aimed to assess the genetic diversity of 2-decyl-4-quinazolinyl amine exon2 (DQA2 exon2) gene among the Egyptian goat populations from different agro-climatic areas. Data of diseases distribution as well as blood samples were collected. The data collected for diseases distribution showed differences in the types of diseases between the agro-climatic areas. The Single Strand Conformation Polymorphism technique (SSCP) was used to assess the genetic diversity of DQA2 exon2 gene among the goat populations. The results showed that the DQA2 exon2 gene locus displayed 21 alleles with different frequencies in each of goat population. The gene diversity values among the populations ranged from 0.950± 0.022 to 0.887± 0.033. The difference between the most southern population (Aswan) and the remaining populations translate to significant (P less than 0.05) differentiation for only one population pair (Aswan – Baladi, with FST= 0.055; P= 0.001). Scrutiny of allele composition in these two goat populations showed unique alleles in each population (six in Aswan and four in Baladi). The results of the study suggested that the allelic numbers and allelic composition for the DQA2 exon2 gene among the Egyptian goat populations showed diversity in the immune gene due to the different pathogens exposure.

Allopolyploid speciation in Siberian Dactylorhiza (Orchidaceae, Orchidoideae)

Morphological and allozyme analyses of Siberian dactylorchids have revealed the presence of a new, previously undescribed allopolyploid that is described here as species new to science. The genetic constitution as revealed by allozyme analysis of this species confirms that its parents are the diploid Siberian D. fuchsii and D. incarnata, and it is 2n=80, representing the first such count from the Asiatic Russia. In most literature surveys of Siberia, the new species has been identified as D. baltica, which is different in the allele composition of the pgi locus. Morphologically, both allotetraploids are similar; D. sibirica is distinguishable due to the absence of spots on the leaves and a narrower lip with narrower lateral lobes. A brief summary of Dactylorhiza allopolyploids from Siberia (Russia) is presented.

Genetic diversity and population structure in four Cirsium (Asteraceae) species

The present study considers genetic diversity of 38 populations in 4 Cirsium species of the genus Cirsium Mill. (Asteraceae), occurring in different ecological regions and tries to compare degree of genetic variability among the species with wide geographical distribution versus endemic C. pyramidale showing confined geographical distribution. The results showed that the endemic species has similar value of genetic diversity parameters as the species with wider distribution. We also studied the possible admixture nature of these populations and tried to understand the relation between genetic changes, geographical distribution and polyploidy level and chromosome pairing in these species. ISSR analysis showed population difference in allele composition and frequency. Clustering and PcoA ordination produced different groupings in each species, while STRUCTURE and reticulation analyses revealed high degree of genetic admixture and gene exchange among populations as well as allelic rearrangement. No significant correlation was observed between geographical distance and genetic distance of the populations and AMOVA test revealed no significant difference among populations in each species studied. However, high amount of within population variation occurred in all 4 species indicating their cross-pollination nature and high genetic admixture. The populations also varied in chiasma frequency and chromosome pairing as well as the occurrence of heterozygote translocations all creating more variability to be used by plants for local adaptation.

Allele variation in loci for adaptive response in Bulgarian wheat cultivars and landraces and its effect on heading date

Allele composition at the major growth habit (Ppd-D1, Vrn-1, Rht-1 and Rht8) loci was determined in 52 Bulgarian bread wheat cultivars and landraces, using recently developed diagnostic molecular markers. The study showed that Bulgarian wheat germplasm varies for photoperiod, vernalization and height-reducing genes. The photoperiod-sensitive allele (Ppd-D1b) was the most frequent one in the old cultivars and landraces (90.9%), while the photoperiod-insensitive allele (Ppd-D1a) showed the highest frequency in the modern cultivars (96.71%). The alleles conferring winter growth habit (vrn-A1, vrn-B1 and vrn-D1) were more common in both the old (72.7%) and the modern (93.3%) wheat genotypes. The spring allele Vrn-A1c was not detected in Bulgarian germplasm, while the spring allele Vrn-B1 was found only in the old genotypes (13.6%). The semi-dwarfing allele Rht-B1b was observed in several modern cultivars. Seven allele variants were found in the microsatellite locus Xgwm261, closely located to the Rht8 gene. Among them, alleles of 164, 212 and 216 bp length were specific for the old genotypes studied, while alleles of 192 and 202 bp length were specific for the modern ones. The allele combination Rht-B1b//192 or 202 bp allele (Xgwm261 locus)//Ppd-D1a//vrn-A1/vrn–B1/vrn-D1 was detected in most of the early-heading modern cultivars. Our study emphasizes on the plasticity of the adaptive response of bread wheat cultivars sown in Bulgaria, as well as on the effect of variation for major growth habit on some yield and reproductive characteristics.

Similarity of cultivars of wheat (Triticum durum) on the basis of composition of Gliadin alleles

Twenty one durum wheat cultivars originating from different world countries were investigated. Composition of gliadins was analyzed by acid polyacrylamide gel electrophoresis. Allele composition of gliadins was determined on the basis of identified gliadin blocks. Polymorphisms of Gli- loci was established and 27 different gliadin alleles were identified, namely, 5 at Gli-A1, 4 at Gli-B1, 9 at Gli-A2 and 9 alleles at Gli-B2 locus. The catalogue of determined alleles was presented. Frequency of alleles ranged from 4.76% to 42.86%. Heterozygous Gli-loci were identified at two durum cultivars. Similarity among cultivars was studied on composition of Gli-alleles and presented by UPGMA dendogram. On the base of Gli-allele composition, similarity varied from 0% to 100%.