tetrahedral oxyanions
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2021 ◽  
Author(s):  
Scott D. Midgley ◽  
Devis Di Tommaso ◽  
Dominik Fleitmann ◽  
Ricardo Grau-Crespo

<p>Sulphur and molybdenum trace impurities in speleothems (stalagmites and stalactites) can provide long and continuous records of volcanic activity, which are important for past climatic and environmental reconstructions. However, the chemistry governing the incorporation of the trace-element bearing species into the calcium carbonate phases forming speleothems is not well understood. Our previous work has shown that substitution as tetrahedral oxyanions [<i>X</i>O<sub>4</sub>]<sup>2-</sup> (<i>X</i>=S, Mo) replacing [CO<sub>3</sub>]<sup>2-</sup> in CaCO<sub>3</sub> bulk phases (except perhaps for vaterite) is thermodynamically unfavourable with respect to the formation of competing phases, due to the larger size and different shape of the [<i>X</i>O<sub>4</sub>]<sup>2- </sup>tetrahedral anions in comparison with the flat [CO<sub>3</sub>]<sup>2-</sup> anions, which implied that most of the incorporation would happen at the surface rather than the bulk of the mineral. Here we present an ab initio molecular dynamics study exploring the incorporation of these impurities at the mineral-water interface. We show that the oxyanions substitution at the aqueous calcite (10.4) surface is clearly favoured over bulk incorporation, due to the lower structural strain on the calcium carbonate solid. Incorporation at surface step sites is even more favourable for both oxyanions, thanks to the additional interface space afforded by the surface line defect to accommodate the tetrahedral anion. Differences between sulphate and molybdate substitution can be mostly explained by the size of the anions. The molybdate oxyanion is more difficult to incorporate in the calcite bulk than the smaller sulphate oxyanion. However, when molybdate is substituted at the surface, the elastic cost is avoided because the oxyanion protrudes out of the surface and gains stability via the interaction with water at the interface, which in balance results in more favourable surface substitution for molybdate than for sulphate. The detailed molecular-level insights provided by our calculations will be useful to understand the chemical basis of S- and Mo-based speleothem records.</p>


2021 ◽  
Author(s):  
Scott D. Midgley ◽  
Devis Di Tommaso ◽  
Dominik Fleitmann ◽  
Ricardo Grau-Crespo

<p>Sulphur and molybdenum trace impurities in speleothems (stalagmites and stalactites) can provide long and continuous records of volcanic activity, which are important for past climatic and environmental reconstructions. However, the chemistry governing the incorporation of the trace-element bearing species into the calcium carbonate phases forming speleothems is not well understood. Our previous work has shown that substitution as tetrahedral oxyanions [<i>X</i>O<sub>4</sub>]<sup>2-</sup> (<i>X</i>=S, Mo) replacing [CO<sub>3</sub>]<sup>2-</sup> in CaCO<sub>3</sub> bulk phases (except perhaps for vaterite) is thermodynamically unfavourable with respect to the formation of competing phases, due to the larger size and different shape of the [<i>X</i>O<sub>4</sub>]<sup>2- </sup>tetrahedral anions in comparison with the flat [CO<sub>3</sub>]<sup>2-</sup> anions, which implied that most of the incorporation would happen at the surface rather than the bulk of the mineral. Here we present an ab initio molecular dynamics study exploring the incorporation of these impurities at the mineral-water interface. We show that the oxyanions substitution at the aqueous calcite (10.4) surface is clearly favoured over bulk incorporation, due to the lower structural strain on the calcium carbonate solid. Incorporation at surface step sites is even more favourable for both oxyanions, thanks to the additional interface space afforded by the surface line defect to accommodate the tetrahedral anion. Differences between sulphate and molybdate substitution can be mostly explained by the size of the anions. The molybdate oxyanion is more difficult to incorporate in the calcite bulk than the smaller sulphate oxyanion. However, when molybdate is substituted at the surface, the elastic cost is avoided because the oxyanion protrudes out of the surface and gains stability via the interaction with water at the interface, which in balance results in more favourable surface substitution for molybdate than for sulphate. The detailed molecular-level insights provided by our calculations will be useful to understand the chemical basis of S- and Mo-based speleothem records.</p>


Author(s):  
A. Dominic Fortes ◽  
Ian G. Wood ◽  
Matthias J. Gutmann

Hexaaquamagnesium(II) sulfate pentahydrate, [Mg(H2O)6]SO4·5H2O, and hexaaquamagnesium(II) chromate(II) pentahydrate, [Mg(H2O)6][CrO4]·5H2O, are isomorphous, being composed of hexaaquamagnesium(II) octahedra, [Mg(H2O)6]2+, and sulfate (chromate) tetrahedral oxyanions, SO42−(CrO42−), linked by hydrogen bonds. There are two symmetry-inequivalent centrosymmetric octahedra:M1 at (0, 0, 0) donates hydrogen bonds directly to the tetrahedral oxyanion,T1, at (0.405, 0.320, 0.201), whereas theM2 octahedron at (0, 0, {1 \over 2}) is linked to the oxyanionviafive interstitial water molecules. Substitution of CrVIfor SVIleads to a substantial expansion ofT1, since the Cr—O bond is approximately 12% longer than the S—O bond. This expansion is propagated through the hydrogen-bonded framework to produce a 3.3% increase in unit-cell volume; the greatest part of this chemically induced strain is manifested along theb* direction. The hydrogen bonds in the chromate compound mitigate ∼20% of the expected strain due to the larger oxyanion, becoming shorter (i.e.stronger) and more linear than in the sulfate analogue. The bifurcated hydrogen bond donated by one of the interstitial water molecules is significantly more symmetrical in the chromate analogue.


2013 ◽  
Vol 4 (4) ◽  
pp. 1560 ◽  
Author(s):  
Jiajia Cai ◽  
Benjamin P. Hay ◽  
Neil J. Young ◽  
Xiaoping Yang ◽  
Jonathan L. Sessler

2011 ◽  
Vol 11 (9) ◽  
pp. 4220-4226 ◽  
Author(s):  
Antonio Abate ◽  
Javier Martí-Rujas ◽  
Pierangelo Metrangolo ◽  
Tullio Pilati ◽  
Giuseppe Resnati ◽  
...  

2011 ◽  
Vol 83 (8) ◽  
pp. 1543-1554 ◽  
Author(s):  
Janusz Jurczak ◽  
Michał J. Chmielewski ◽  
Paweł Dydio ◽  
Dawid Lichosyt ◽  
Filip Ulatowski ◽  
...  

Neutral anion receptors working in highly demanding solvents are new materials being sought. Benzopyrroles are more acidic than amides and pyrrole itself, and are promising building blocks in the design of host compounds. A whole series of receptors based upon benzopyrroles were synthesized and evaluated. They include carbazole, dipyrrolonaph-thalene, and 7-aminoindole-based hosts. Most of them demonstrate moderate binding affinities in dimethyl sulfoxide (DMSO) and have good selectivity toward tetrahedral oxyanions. Recently, a group of receptors utilizing 7-aminoindole and urea moieties proved to work in a very competitive solvent—methanol.


2006 ◽  
Vol 250 (23-24) ◽  
pp. 3004-3037 ◽  
Author(s):  
Evgeny A. Katayev ◽  
Yuri A. Ustynyuk ◽  
Jonathan L. Sessler

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