unstable mutations
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BMC Genomics ◽  
2020 ◽  
Vol 21 (1) ◽  
Author(s):  
Somayeh Kordafshari ◽  
Pollob Shil ◽  
Marc S. Marenda ◽  
Olusola M. Olaogun ◽  
Barbara Konsak-Ilievski ◽  
...  

An amendment to this paper has been published and can be accessed via the original article.


BMC Genomics ◽  
2020 ◽  
Vol 21 (1) ◽  
Author(s):  
Somayeh Kordafshari ◽  
Pollob Shil ◽  
Marc S. Marenda ◽  
Olusola M. Olaogun ◽  
Barbara Konsak-Ilievski ◽  
...  

Abstract Background Genomic comparison of Mycoplasma synoviae vaccine strain MS-H and the MS-H parental strain 86,079/7NS established a preliminary profile of genes related to attenuation of MS-H. In this study we aimed to identify the stability of mutations found in MS-H after passage in experimental or field chickens, and to evaluate if any reverse mutation may be associated with changes in characteristics of MS-H in vitro or in vivo. Results Whole genome sequence analysis of 5 selected MS-H field reisolates revealed that out of 32 mutations reported previously in MS-H, 28 remained stable, while four found to be reversible to the wild-type. Each isolate possessed mutations in one to three of the genes obg, oppF1 and gap and/or a non-coding region. Examination of the 4 reversible mutations by protein modeling predicted that only two of them (in obg and oppF1 genes) could potentially restore the function of the respective protein to that of the wild-type. Conclusions These results suggest that the majority of the MS-H mutations are stable after passage in vaccinated chickens. Characterisation of stable mutations found in MS-H could be utilised to develop rapid diagnostic techniques for differentiation of vaccine from field strains or ts- MS-H reisolates.


2014 ◽  
Vol 1 (2) ◽  
pp. 501
Author(s):  
Patricia Cuenca ◽  
Fernando Morales ◽  
Isabel Castro

2006 ◽  
Vol 87 (4) ◽  
pp. 961-965 ◽  
Author(s):  
József Tözsér ◽  
Sergey Shulenin ◽  
Matthew R. Young ◽  
Carlton J. Briggs ◽  
Stephen Oroszlan

The genetic stability of attenuated Human immunodeficiency virus 1 (HIV-1) variants harbouring mutations (Gly or Lys) of Asn17, the protease-cleavage site of the proximal zinc finger of the nucleocapsid protein, was studied. All possible codons for the Gly mutants were tested as starting sequences. Long-term replication assays revealed that the mutants were unstable; mutations of Gly17 to Arg, Ala, Ser and Cys, as well as a Lys17Asn reversion, were observed. Replication kinetic assays in H9 cells revealed that the replication of Ala, Ser and Arg mutants was improved substantially compared with the Gly variant; the infectivity of Ala17 and Ser17 viruses was equal to, and that of Arg17 was almost equal to, the infectivity of the wild-type virus. Kinetic analysis of the cleavage of oligopeptides representing the corresponding nucleocapsid-cleavage sites revealed that all mutations improved cleavability, in good agreement with the previously proposed role of nucleocapsid cleavage in HIV-1 replication.


2001 ◽  
Vol 3 (4) ◽  
pp. 296-303

The distinction between schizophrenia and chronic delusional syndromes (including the French concept of "psychose hallucinatoire chronique" [PHC] or chronic psychotic hallucinations, paraphrenia, and late paraphrenia) is currently used in various European countries, although there are no international criteria for chronic and bizarre delusions. The French concept of PHC is characterized by late-onset psychosis, predominantly in females, with rich and frequent hallucinations, but almost no dissociative features or negative symptoms. PHC and late-onset schizophrenia may have risk factors in common, which may help differentiate these disorders from young-onset schizophrenia, especially with regard to the potential role of (i) the estradiol hypothesis; (ii) the impact of sensory deficit; (Hi) putative specific brain abnormalities; or (iv) specific genetic mutations. In accordance with this hypothesis, and taking into account the familial aggregation analyses of PHC, here we evaluate the possibility that PHC represents a less severe form of schizophrenia, which would partly explain the "Sherman paradox" also observed in schizophrenia. The Sherman paradox describes the fact that multiplex families frequently have only one affected ascendant, meaning that an isolated sporadic case is at the origin of a highly loaded family. We thus propose that if unstable mutations are involved in the risk for schizophrenia, then PHC might represent a moderate disorder belonging to the schizophrenia spectrum phenotype.


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