Ontogeny of NHE8 in the rat proximal tubule

Proximal tubule bicarbonate reabsorption is primarily mediated via the Na+/H+ exchanger, identified as NHE3 in adults. Previous studies have demonstrated a maturational increase in rat proximal tubule NHE3 expression, with a paucity of NHE3 expression in neonates, despite significant Na+-dependent proton secretion. Recently, a novel Na+/H+ antiporter (NHE8) was identified and found to be expressed on the apical membrane of the proximal tubule. To determine whether NHE8 may be the antiporter responsible for proton secretion in neonates, the present study characterized the developmental expression of NHE8 in rat proximal tubules. RNA blots and real-time RT-PCR demonstrated no developmental difference in the mRNA of renal NHE8. Immunoblots, however, demonstrated peak protein abundance of NHE8 in brush border membrane vesicles of 7- and 14-day-old compared with adult rats. In contrast, the level of NHE8 expression in total cortical membrane protein was higher in adults than in neonates. Immunohistochemistry confirmed the presence of NHE8 on the apical membrane of the proximal tubules of neonatal and adult rats. These data demonstrate that NHE8 does undergo maturational changes on the apical membrane of the rat proximal tubule and may account for the Na+-dependent proton flux in neonatal proximal tubules.

The SAR92 Clade: an Abundant Coastal Clade of Culturable Marine Bacteria Possessing Proteorhodopsin

ABSTRACT Proteorhodopsin (PR) is a protein that is abundant in marine bacterioplankton. PR is hypothesized to be a light-dependent proton pump, thus creating a proton gradient that can be used for energy production without electron transport. Currently, the only culture that has been reported to possesses PR is the highly abundant alphaproteobacterium “Candidatus Pelagibacter ubique” (SAR11 clade), but surprisingly, its growth in batch culture was not enhanced by light. Here, we present the first cultured gammaproteobacterium that possesses a PR gene. Genome sequencing and analysis of HTCC2207 showed that the PR gene is present as a lone transcriptional unit directly followed by an operon containing genes that are presumably involved in the synthesis of retinal, the chromophore of PR. Half-time decay times of different PR intermediates in native HTCC2207 cells ranged between 2 and 15 ms, and the absorbance maximum of PR was determined to be 528 nm. Proteorhodopsin was identified in three additional strains, using a specific PCR assay on other cultured members of the SAR92 clade. Phylogenetic analyses of the PR genes determined that they form a deeply rooting cluster not closely related to any PR genes recovered so far. Fluorescence in situ hybridization and RNA blots showed that the SAR92 clade reaches up to 10% of the total bacterial population in surface waters close to the Oregon coast and decreases over depth and distance from the shore. Although the growth of HTCC2207 is limited by the amount of available carbon that is present in the medium applied, these cultures do not grow at higher rates nor do they have higher growth yields when incubated under light.

Design and Evaluation of a Lactobacillus manihotivorans Species-Specific rRNA-Targeted Hybridization Probe and Its Application to the Study of Sour Cassava Fermentation

ABSTRACT Based on 16S rRNA sequence comparison, we have designed a 20-mer oligonucleotide that targets a region specific to the speciesLactobacillus manihotivorans recently isolated from sour cassava fermentation. The probe recognized the rRNA obtained from all the L. manihotivorans strains tested but did not recognize 56 strains of microorganisms from culture collections or directly isolated from sour cassava, including 29 species of lactic acid bacteria. This probe was then successfully used in quantitative RNA blots and demonstrated the importance of L. manihotivoransin the fermentation of sour cassava starch, which could represent up to 20% of total lactic acid bacteria.

A Synergism Induced by Satellite Panicum Mosaic Virus

Panicum mosaic virus (PMV) induces a mild mottle on millet plants, but the addition of its satellite virus (SPMV) causes a severe chlorosis and stunting. Immunoblots, RNA blots, and sucrose density gradient analyses revealed increases of PMV RNA and its p8 and capsid proteins when plants were co-infected with SPMV. A unique feature associated with this satellite virus interaction was an increased rate of systemic infection of PMV.

First Report of Grapevine Virus A in Spain

Grapevine trichovirus A (GVA), a flexuous, filamentous, phloem-limited virus with an approximately 7.3-kbp RNA genome, is widespread in grapevines showing symptoms of leafroll and/or rugose wood. The virus can be mechanically inoculated to Nicotiana benthamiana and N. clevelandii. A field survey of diseased Vitis vinifera white and red cultivars was carried out in Pontevedra (northwest Spain) during the autumn of 1993. We detected the presence of GVA in vines showing leafroll symptoms by an immunocapture-reverse transcription-polymerase chain reaction (PCR) method (2) with GVA-specific primers (1). Bands of the expected size of 430 bp were obtained with extracts from petioles and stem bark as reaction substrates. To verify these results, Northern (RNA) blots with double-stranded (ds) RNAs isolated from grapevines were prepared. Hybridization was positive in two out of 10 samples analyzed. The probe was a 32P-labeled 430-bp PCR product amplified from extracts of N. benthamiana plants infected with GVA strain Is151 (gift of A. Mina-fra). The specificity of this probe was confirmed in dot blot hybridization, as a positive signal was obtained with extracts from GVA-inoculated N. benthamiana, but not with extracts of phosphate buffer-inoculated N. benthamiana, turnip mosaic potyvirus-inoculated Arabidopsis thaliana, or potato potyvirus Y-inoculated N. xanthi plants. The probe did not hybridize to dsRNAs extracted from enzyme-linked immunosorbent assay-positive GLRaV-III-infected grapevines. GVA has been identified in other Mediterranean countries, but to our knowledge this is the first report of the detection of GVA in Spain. References: (1) A. Minafra and A. Hadidi. J. Virol. Methods 47:175, 1994. (2) G. Nolasco et al. J. Virol. Methods 45:201, 1993.

Cloning and Expression of Dehydrin Genes in Blueberry

Previous studies identified three major chilling-responsive proteins of 65, 60, and 14 kDa whose levels increase in floral buds of blueberry during cold acclimation and decrease during deacclimation and resumption of growth. Characterization of these proteins found them to be members of a family of proteins responsive to drought and low temperature stress called dehydrins. The 65- and 60-kDa proteins were purified, digested into peptides, and several peptides from each were sequenced. The sequence information was used to synthesize degenerate DNA primers for amplification of a part of the gene(s) encoding these proteins. One pair of primers amplified a 200-bp fragment, which now has been cloned and sequenced. Within the 200-bp sequence is a motif conserved amongst dehydrins. Hybridization of the 200-bp fragment to RNA blots revealed homology to two chilling-responsive messages of 3.7 and 1.6 kb. The 200-bp fragment currently is being used to screen a cDNA library (prepared from RNA from cold acclimated blueberry floral buds) to isolate the full length cDNA clone.