AbstractPatients diagnosed with lung squamous cell carcinoma (LUSC) have limited targeted therapeutic options. We report here the identification and characterisation of the transcriptional regulator,BCL11A, as a LUSC oncogene. Analysis of cancer genomics datasets revealedBCL11Ato be upregulated in LUSC but not lung adenocarcinoma (LUAD). We demonstrated that knockdown ofBCL11Ain LUSC cell lines abolished xenograft tumour growth and its overexpressionin vivoled to lung airway hyperplasia and the development of reserve cell hyperplastic lesions. In addition, deletion ofBcl11ain the tracheal basal cells abolished the development of tracheosphere organoids while its overexpression led to solid tracheospheres with a squamous phenotype. At the molecular level we foundBCL11Ato be a target of SOX2 and we show that it is required for the oncogenic role of SOX2 in LUSC. Furthermore, we showed thatBCL11Aand SOX2 interact at the protein level and that together they co-regulated the expression of several transcription factors. We demonstrate that pharmacological inhibition of SETD8, a gene co-regulated by BCL11A and SOX2, alone or in combination with cisplatin treatment, shows significant selectivity to LUSC in comparison to LUAD cells. Collectively, these results indicate that the disruption of the BCL11A-SOX2 transcriptional program provides a future framework for the development of targeted therapeutic intervention for LUSC patients.