scholarly journals Metapopulation structure modulates sexual antagonism

2021 ◽  
Author(s):  
E. Rodriguez‐Exposito ◽  
F. Garcia‐Gonzalez
Keyword(s):  
Sexual Antagonism ◽  
Metapopulation Structure

Genesis, Sexual Antagonism, and the Defective Couple of the Twelfth-Century Jeu d'Adam

1990 ◽  
Vol 29 (1) ◽  
pp. 124-144
Author(s):  
Jonathan Beck
Keyword(s):  
Twelfth Century ◽  
Sexual Antagonism

scholarly journals Differential Gene Expression between Fungal Mating Types Is Associated with Sequence Degeneration

2020 ◽  
Vol 12 (4) ◽  
pp. 243-258 ◽  
Author(s):  
Wen-Juan Ma ◽  
Fantin Carpentier ◽  
Tatiana Giraud ◽  
Michael E Hood
Keyword(s):  
Differential Expression ◽  
Differentially Expressed Genes ◽  
Mating Type ◽  
Sex Chromosomes ◽  
Sex Chromosome ◽  
Gc Content ◽  
Differentially Expressed ◽  
Mating Types ◽  
Sexual Antagonism ◽  
Recombination Suppression

Abstract Degenerative mutations in non-recombining regions, such as in sex chromosomes, may lead to differential expression between alleles if mutations occur stochastically in one or the other allele. Reduced allelic expression due to degeneration has indeed been suggested to occur in various sex-chromosome systems. However, whether an association occurs between specific signatures of degeneration and differential expression between alleles has not been extensively tested, and sexual antagonism can also cause differential expression on sex chromosomes. The anther-smut fungus Microbotryum lychnidis-dioicae is ideal for testing associations between specific degenerative signatures and differential expression because 1) there are multiple evolutionary strata on the mating-type chromosomes, reflecting successive recombination suppression linked to mating-type loci; 2) separate haploid cultures of opposite mating types help identify differential expression between alleles; and 3) there is no sexual antagonism as a confounding factor accounting for differential expression. We found that differentially expressed genes were enriched in the four oldest evolutionary strata compared with other genomic compartments, and that, within compartments, several signatures of sequence degeneration were greater for differentially expressed than non-differentially expressed genes. Two particular degenerative signatures were significantly associated with lower expression levels within differentially expressed allele pairs: upstream insertion of transposable elements and mutations truncating the protein length. Other degenerative mutations associated with differential expression included nonsynonymous substitutions and altered intron or GC content. The association between differential expression and allele degeneration is relevant for a broad range of taxa where mating compatibility or sex is determined by genes located in large regions where recombination is suppressed.

scholarly journals Metapopulation Patterns of Iberian Butterflies Revealed by Fuzzy Logic

Insects ◽  
2021 ◽  
Vol 12 (5) ◽  
pp. 392
Author(s):  
Antonio Pulido-Pastor ◽  
Ana Luz Márquez ◽  
José Carlos Guerrero ◽  
Enrique García-Barros ◽  
Raimundo Real
Keyword(s):  
Fuzzy Logic ◽  
Set Theory ◽  
Fuzzy Set Theory ◽  
Metapopulation Dynamics ◽  
Butterfly Species ◽  
Dynamics Analysis ◽  
Metapopulation Structure ◽  
Occurrence Data ◽  
Metapopulation Theory ◽  
The Cost

Metapopulation theory considers that the populations of many species are fragmented into patches connected by the migration of individuals through an interterritorial matrix. We applied fuzzy set theory and environmental favorability (F) functions to reveal the metapopulational structure of the 222 butterfly species in the Iberian Peninsula. We used the sets of contiguous grid cells with high favorability (F ≥ 0.8), to identify the favorable patches for each species. We superimposed the known occurrence data to reveal the occupied and empty favorable patches, as unoccupied patches are functional in a metapopulation dynamics analysis. We analyzed the connectivity between patches of each metapopulation by focusing on the territory of intermediate and low favorability for the species (F < 0.8). The friction that each cell opposes to the passage of individuals was computed as 1-F. We used the r.cost function of QGIS to calculate the cost of reaching each cell from a favorable patch. The inverse of the cost was computed as connectivity. Only 126 species can be considered to have a metapopulation structure. These metapopulation structures are part of the dark biodiversity of butterflies because their identification is not evident from the observation of the occurrence data but was revealed using favorability functions.

scholarly journals Impact of cyclones on hard coral and metapopulation structure, connectivity and genetic diversity of coral reef fish

Coral Reefs ◽  
2021 ◽  
Author(s):  
Gabriele Gerlach ◽  
Philipp Kraemer ◽  
Peggy Weist ◽  
Laura Eickelmann ◽  
Michael J. Kingsford
Keyword(s):  
Genetic Diversity ◽  
Coral Reef ◽  
Genetic Structure ◽  
Reef Fish ◽  
Coral Reef Fish ◽  
Population Genetic Study ◽  
Hard Coral ◽  
Great Loss ◽  
Metapopulation Structure ◽  
The Impact

AbstractCyclones have one of the greatest effects on the biodiversity of coral reefs and the associated species. But it is unknown how stochastic alterations in habitat structure influence metapopulation structure, connectivity and genetic diversity. From 1993 to 2018, the reefs of the Capricorn Bunker Reef group in the southern part of the Great Barrier Reef were impacted by three tropical cyclones including cyclone Hamish (2009, category 5). This resulted in substantial loss of live habitat-forming coral and coral reef fish communities. Within 6–8 years after cyclones had devastated, live hard corals recovered by 50–60%. We show the relationship between hard coral cover and the abundance of the neon damselfish (Pomacentrus coelestis), the first fish colonizing destroyed reefs. We present the first long-term (2008–2015 years corresponding to 16–24 generations of P. coelestis) population genetic study to understand the impact of cyclones on the meta-population structure, connectivity and genetic diversity of the neon damselfish. After the cyclone, we observed the largest change in the genetic structure at reef populations compared to other years. Simultaneously, allelic richness of genetic microsatellite markers dropped indicating a great loss of genetic diversity, which increased again in subsequent years. Over years, metapopulation dynamics were characterized by high connectivity among fish populations associated with the Capricorn Bunker reefs (2200 km2); however, despite high exchange, genetic patchiness was observed with annual strong genetic divergence between populations among reefs. Some broad similarities in the genetic structure in 2015 could be explained by dispersal from a source reef and the related expansion of local populations. This study has shown that alternating cyclone-driven changes and subsequent recovery phases of coral habitat can greatly influence patterns of reef fish connectivity. The frequency of disturbances determines abundance of fish and genetic diversity within species.

scholarly journals The maintenance of polygenic sex determination depends on the dominance of fitness effects which are predictive of the role of sexual antagonism

2021 ◽  
Author(s):  
Richard P Meisel
Keyword(s):  
Sex Determination ◽  
Sex Chromosomes ◽  
House Fly ◽  
Sexual Antagonism ◽  
Antagonistic Effects ◽  
Fitness Effects ◽  
Y Chromosomes ◽  
Sexually Antagonistic Selection ◽  
The Individual ◽  
Polygenic Sex Determination

Abstract In species with polygenic sex determination, multiple male- and female-determining loci on different proto-sex chromosomes segregate as polymorphisms within populations. The extent to which these polymorphisms are at stable equilibria is not yet resolved. Previous work demonstrated that polygenic sex determination is most likely to be maintained as a stable polymorphism when the proto-sex chromosomes have opposite (sexually antagonistic) fitness effects in males and females. However, these models usually consider polygenic sex determination systems with only two proto-sex chromosomes, or they do not broadly consider the dominance of the alleles under selection. To address these shortcomings, I used forward population genetic simulations to identify selection pressures that can maintain polygenic sex determination under different dominance scenarios in a system with more than two proto-sex chromosomes (modeled after the house fly). I found that overdominant fitness effects of male-determining proto-Y chromosomes are more likely to maintain polygenic sex determination than dominant, recessive, or additive fitness effects. The overdominant fitness effects that maintain polygenic sex determination tend to have proto-Y chromosomes with sexually antagonistic effects (male-beneficial and female-detrimental). In contrast, dominant fitness effects that maintain polygenic sex determination tend to have sexually antagonistic multi-chromosomal genotypes, but the individual proto-sex chromosomes do not have sexually antagonistic effects. These results demonstrate that sexual antagonism can be an emergent property of the multi-chromosome genotype without individual sexually antagonistic chromosomes. My results further illustrate how the dominance of fitness effects has consequences for both the likelihood that polygenic sex determination will be maintained as well as the role sexually antagonistic selection is expected to play in maintaining the polymorphism.

scholarly journals Low allozyme heterozygosity in North Pacific and Bering Sea populations of red king crab (Paralithodes camtschaticus): adaptive specialization, population bottleneck, or metapopulation structure?

2011 ◽  
Vol 68 (3) ◽  
pp. 499-506 ◽  
Author(s):  
W. Stewart Grant ◽  
Susan E. Merkouris ◽  
Gordon H. Kruse ◽  
Lisa W. Seeb
Keyword(s):  
Bering Sea ◽  
North Pacific ◽  
Population Bottleneck ◽  
Ice Age ◽  
Red King Crab ◽  
Paralithodes Camtschaticus ◽  
Allozyme Diversity ◽  
King Crab ◽  
Metapopulation Structure ◽  
Adaptive Specialization

AbstractGrant, W. S., Merkouris, S. E., Kruse, G. H., and Seeb, L. W. 2011. Low allozyme heterozygosity in North Pacific and Bering Sea populations of red king crab (Paralithodes camtschaticus): adaptive specialization, population bottleneck, or metapopulation structure? – ICES Journal of Marine Science, 68: . Populations of red king crab in the North Pacific and Bering Sea have declined in response to ocean-climate shifts and to harvesting. An understanding of how populations are geographically structured is important to the management of these depressed resources. Here, the Mendelian variability at 38 enzyme-encoding loci was surveyed in 27 samples (n = 2427) from 18 general locations. Sample heterozygosities were low, averaging HE = 0.015 among samples. Weak genetic structure was detected among three groups of populations, the Bering Sea, central Gulf of Alaska, and Southeast Alaska, but without significant isolation by distance among populations. A sample from Adak Island in the western Aleutians was genetically different from the remaining samples. The lack of differentiation among populations within regions may, in part, be due to post-glacial expansions and a lack of migration-drift equilibrium and to limited statistical power imposed by low levels of polymorphism. Departures from neutrality may reflect the effects of both selective and historical factors. The low allozyme diversity in red king crab may, in part, be attributable to adaptive specialization, background selection, ice-age population bottlenecks, or metapopulation dynamics in a climatically unstable North Pacific.

Metapopulation structure and dynamics of an endangered butterfly

2010 ◽  
Vol 11 (4) ◽  
pp. 354-362 ◽  
Author(s):  
Margaret S. Guiney ◽  
David A. Andow ◽  
Timothy T. Wilder
Keyword(s):  
Structure And Dynamics ◽  
Metapopulation Structure

Decomposed pairwise regression analysis of genetic and geographic distances reveals a metapopulation structure of stream-dwelling Dolly Varden charr

2006 ◽  
Vol 15 (11) ◽  
pp. 3175-3189 ◽  
Author(s):  
ITSURO KOIZUMI ◽  
SHOICHIRO YAMAMOTO ◽  
KOJI MAEKAWA
Keyword(s):  
Regression Analysis ◽  
Dolly Varden ◽  
Metapopulation Structure

scholarly journals Evolutionary strata on young mating-type chromosomes despite the lack of sexual antagonism

2017 ◽  
Vol 114 (27) ◽  
pp. 7067-7072 ◽  
Author(s):  
Sara Branco ◽  
Hélène Badouin ◽  
Ricardo C. Rodríguez de la Vega ◽  
Jérôme Gouzy ◽  
Fantin Carpentier ◽  
...  
Keyword(s):  
Mating Type ◽  
Balancing Selection ◽  
Smut Fungi ◽  
Mating Types ◽  
Sexual Antagonism ◽  
Recombination Suppression ◽  
Ancestral Gene ◽  
Anther Smut ◽  
Mating Type Genes ◽  
Suppressed Recombination

Sex chromosomes can display successive steps of recombination suppression known as “evolutionary strata,” which are thought to result from the successive linkage of sexually antagonistic genes to sex-determining genes. However, there is little evidence to support this explanation. Here we investigate whether evolutionary strata can evolve without sexual antagonism using fungi that display suppressed recombination extending beyond loci determining mating compatibility despite lack of male/female roles associated with their mating types. By comparing full-length chromosome assemblies from five anther-smut fungi with or without recombination suppression in their mating-type chromosomes, we inferred the ancestral gene order and derived chromosomal arrangements in this group. This approach shed light on the chromosomal fusion underlying the linkage of mating-type loci in fungi and provided evidence for multiple clearly resolved evolutionary strata over a range of ages (0.9–2.1 million years) in mating-type chromosomes. Several evolutionary strata did not include genes involved in mating-type determination. The existence of strata devoid of mating-type genes, despite the lack of sexual antagonism, calls for a unified theory of sex-related chromosome evolution, incorporating, for example, the influence of partially linked deleterious mutations and the maintenance of neutral rearrangement polymorphism due to balancing selection on sexes and mating types.

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