In-field volatile analysis employing a hand-held portable GC-MS: emission profiles differentiate damaged and undamaged yellow starthistle flower heads

2015 ◽  
Vol 26 (6) ◽  
pp. 395-403 ◽  
Author(s):  
John J. Beck ◽  
Nathan Porter ◽  
Daniel Cook ◽  
Wai S. Gee ◽  
Corey M. Griffith ◽  
...  
HortScience ◽  
1996 ◽  
Vol 31 (4) ◽  
pp. 643f-643
Author(s):  
Weimin Deng ◽  
Randolph M. Beaudry

Sampling factors that could affect gas chromatograph (GC) response for volatile analysis such as syringe pumping time, injection volume, needle length, temperature, and the type of volatile were investigated. Capillary GC column segments (steel and glass) were installed in gas-tight syringes and used as needles for volatile analysis. Standard stainless-steel needles were also used. Hexylacetate, ethyl-2-methylbutyrate, 6-methyl-5-hepten-2-one, and butanol standard were measured. The number of pumps required to maximize GC response for each needle–volatile combination was determined. Maximal GC response for hexylacetate using standard stainless steel, capillary glass, and capillary steel needles required 10, 20 and 30 pumps, respectively. However, for butanol measurement, the optimal syringe pump number was 5 to 10 for all needle types. The use of a capillary needle resulted in an increase in GC response in the range of 3- to 15-fold relative to a standard stainless steel needle. Injection volume affected GC response in a needle-and volatile-dependent manner. In no case did injection volume vs. GC response extrapolate through origin. The GC response for capillary column needles increased as temperature decreased. Capillary column needles may be useful tools for analysis of volatiles that readily partition into the column coating.


2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Kajsa Roslund ◽  
Markku Lehto ◽  
Pirkko Pussinen ◽  
Kari Hartonen ◽  
Per-Henrik Groop ◽  
...  

AbstractWe have measured the volatile fingerprints of four pathogenic oral bacteria connected to periodontal disease and dental abscess: Porphyromonas gingivalis (three separate strains), Prevotella intermedia, Prevotella nigrescens and Tannerella forsythia. Volatile fingerprints were measured in vitro from the headspace gas of the bacteria cultured on agar. Concrete identification of new and previously reported bacterial volatiles were performed by a combination of solid phase microextraction (SPME) and offline gas chromatography–mass spectrometry (GC–MS). We also studied the effect of the reduced electric field strength (E/N) on the fragmentation patterns of bacterial volatiles in online proton-transfer-reaction time-of-flight mass spectrometry (PTR-ToF-MS). We aimed to discover possible new biomarkers for the studied oral bacteria, as well as to validate the combination of GC–MS and PTR-MS for volatile analysis. Some of the most promising compounds produced include: 1-Methyl-1,2,3,4-tetrahydroisoquinoline (1MeTIQ), indole, and a cascade of sulphur compounds, such as methanethiol, dimethyl disulphide (DMDS) and dimethyl trisulphide (DMTS). We also found that several compounds, especially alcohols, aldehydes and esters, fragment significantly with the PTR-MS method, when high E/N values are used. We conclude that the studied oral bacteria can be separated by their volatile fingerprints in vitro, which could have importance in clinical and laboratory environments. In addition, using softer ionization conditions can improve the performance of the PTR-MS method in the volatile analysis of certain compounds.


Plant Disease ◽  
2006 ◽  
Vol 90 (4) ◽  
pp. 425-428 ◽  
Author(s):  
T. L. Widmer ◽  
F. Guermache

Yellow starthistle (Centaurea solstitialis) is an annual invasive weed in the United States with Mediterranean origins. The expense of chemical control and the vast area of invasion make this weed an appropriate target for classical biological control. Observations of a field site in southern France revealed small orange galls on the leaves of yellow starthistle seedlings caused by the fungus Synchytrium solstitiale. Inoculation of yellow starthistle seedlings with a suspension of zoospores released from infected tissue resulted in infection. Ten days after inoculation, typical orange galls appeared on the exposed tissue. Preliminary host range testing showed up to 100% infection of C. solstitialis seedlings from both France and the United States and infection of Carthamus tinctorius, Centaurea americana, C. diffusa, C. rothrockii, C. squarrosa, and Helianthus annuus seedlings. No symptoms were observed on seedlings of Centaurea calcitrapa, C. maculosa, C. sulfurea, Cirsium californica, C. occidentale, Cynera cardunculus, and Taraxacum officinale. Zoospores were released in a pH range between 4.45 and 8.25 and optimally at temperatures between 5 and 15°C. Infection of yellow starthistle seedlings occurred after a minimum 1-h exposure to a zoospore suspension at 20°C.


2015 ◽  
pp. 787-793 ◽  
Author(s):  
N.D. Spadafora ◽  
I. Machado ◽  
C.T. Müller ◽  
M. Pintado ◽  
M. Bates ◽  
...  

Plant Disease ◽  
2008 ◽  
Vol 92 (6) ◽  
pp. 983-983 ◽  
Author(s):  
T. Kolomiets ◽  
L. Pankratova ◽  
Z. Mukhina ◽  
D. Kassanelly ◽  
T. Matveeva ◽  
...  

Yellow starthistle (YST), Centaurea solstitialis L., is a weedy plant that is widely distributed in the Krasnodar Region of Russia. It is also an aggressive invasive weed in the western United States and a target of biological control efforts. In the summer of 2006, several hundred diseased plants were found near Taman, Russia. Symptoms of the disease were yellow, water-soaked leaf spots. Diseased leaves were collected, air dried, and sent to the Russian State Collection of Phytopathogenic Organisms at the All Russia Institute of Phytopathology (ARIP). The fungus isolated from the diseased leaves conformed to Periconia igniaria E.W. Mason & M.B. Ellis (teleomorph Didymosphaeria igniaria C. Booth) (1). Colonies of the fungus grew rapidly on potato glucose nutrition medium with aerial mycelium from fluffy to pressed and colorless at the beginning and darkening to black with age. The medium side of the colonies gradually became violet purple to wine colored. Conidiophores had aerial mycelia as much as 550 μm long and 9 to 13 μm wide tapering to 6 to 10 μm. Conidiophores were dark with short, swollen branched stipes. Conidia, formed in short twisted chains, were spherical, dark brown, 7 to 9 μm in diameter, and covered by 1 μm long spines. Yellow starthistle plants were grown in growth chambers with day/night air temperatures of 26 to 28/20 to 22°C, 60 to 70% relative air humidity, and 10,000 lx light for 16 h. Fifteen plants in the rosette stage were spray inoculated with an aqueous suspension of P. igniaria conidia at 5 × 106 conidia/ml and 5 ml per plant. Disease on leaves was observed on all plants 3 to 4 weeks after inoculation when the plants started to bolt. When the plants reached flowering stage, diffused yellow spots were observed on stems and inflorescences and all flowers died. Diseased leaves were surface disinfested and put on potato saccharose nutrition medium. P. igniaria was reisolated from 3 to 5 leaves of each plant and from flowers and stems that developed from 10 inoculated rosettes. Flowers of 10 YST plants were also inoculated with P. igniaria isolated from the previously inoculated plants. Disease developed in the flowers of all inoculated plants, and the symptoms were identical to those observed when rosettes were inoculated and disease followed bolting and flowering. No symptoms developed on four noninoculated plants included in each test. Internal transcribed spacer (ITS) sequences of the fungus were obtained and compared with sequences from GenBank. An uncultured soil fungus and three isolates of P. macrospinosa Lefebvre & Aar.G. Johnson produced the best homology (96%). No sequences for P. igniaria were available for comparison, but the description of P. macrospinosa (conidia 18 to 32 μm in diameter with 2.5 to 6 μm long spines) is clearly different than our isolate. ITS sequences for our isolate have been deposited in GenBank (Accession No. EU367468) and a voucher specimen has been deposited with the U.S. National Fungus Collection (BPI 878355). To our knowledge, this is the first report of P. igniaria causing disease on YST. Live cultures are being maintained at the Russian State Collection of Phytopathogenic Organisms in ARIP. Reference: (1) M. B. Ellis. Dematiaceous Hyphomycetes. CMI, Kew, UK, 1971.


2005 ◽  
Vol 19 (1) ◽  
pp. 94-101 ◽  
Author(s):  
STEPHEN F. ENLOE ◽  
JOSEPH M. DITOMASO ◽  
STEVE B. ORLOFF ◽  
DANIEL J. DRAKE

2008 ◽  
pp. 225-241 ◽  
Author(s):  
Karen M. Jetter ◽  
Joseph M. Ditomaso ◽  
Daniel J. Drake ◽  
Karen M. Klonsky ◽  
Michael J. Pitcairn ◽  
...  

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