Progress in methodologies and quality‐control strategies in protein cross‐linking mass spectrometry

PROTEOMICS ◽  
2021 ◽  
pp. 2100145
Author(s):  
Kumar Yugandhar ◽  
Qiuye Zhao ◽  
Shobhita Gupta ◽  
Dapeng Xiong ◽  
Haiyuan Yu
Keyword(s):  
Mass Spectrometry ◽  
Quality Control ◽  
Control Strategies ◽  
Cross Linking ◽  
Protein Cross Linking

scholarly journals Glycan-protein cross-linking mass spectrometry reveals sialic acid-mediated protein networks on cell surfaces

2021 ◽  
Author(s):  
Yixuan Xie ◽  
Siyu Chen ◽  
Qiongyu Li ◽  
Ying Sheng ◽  
Michael R Alvarez ◽  
...  
Keyword(s):  
Mass Spectrometry ◽  
Sialic Acid ◽  
Membrane Proteins ◽  
Cell Membranes ◽  
Sialic Acids ◽  
Cross Linking ◽  
Protein Networks ◽  
Cell Surfaces ◽  
Protein Cross Linking

A cross-linking method is developed to elucidate the glycan-mediated interactions between membrane proteins through sialic acids. The method provides previously unknown extensive glycomic interactions on cell membranes. The vast majority...

scholarly journals CLMSVault: A Software Suite for Protein Cross-Linking Mass-Spectrometry Data Analysis and Visualization

2017 ◽  
Vol 16 (7) ◽  
pp. 2645-2652 ◽  
Author(s):  
Mathieu Courcelles ◽  
Jasmin Coulombe-Huntington ◽  
Émilie Cossette ◽  
Anne-Claude Gingras ◽  
Pierre Thibault ◽  
...  
Keyword(s):  
Mass Spectrometry ◽  
Data Analysis ◽  
Mass Spectrometry Data ◽  
Cross Linking ◽  
Software Suite ◽  
Protein Cross Linking

scholarly journals Differential Tandem Mass Spectrometry-Based Cross-Linker: A New Approach for High Confidence in Identifying Protein Cross-Linking

2016 ◽  
Vol 88 (20) ◽  
pp. 10215-10222 ◽  
Author(s):  
Jayanta K. Chakrabarty ◽  
Aishwarya G. Naik ◽  
Michael B. Fessler ◽  
Gerhard R. Munske ◽  
Saiful M. Chowdhury
Keyword(s):  
Mass Spectrometry ◽  
Tandem Mass Spectrometry ◽  
Cross Linking ◽  
Tandem Mass ◽  
High Confidence ◽  
New Approach ◽  
Cross Linker ◽  
Protein Cross Linking

Pro-CrossLink. Software Tool for Protein Cross-Linking and Mass Spectrometry

2006 ◽  
Vol 78 (7) ◽  
pp. 2145-2149 ◽  
Author(s):  
Qiuxia Gao ◽  
Song Xue ◽  
Catalin E. Doneanu ◽  
Scott A. Shaffer ◽  
David R. Goodlett ◽  
...  
Keyword(s):  
Mass Spectrometry ◽  
Software Tool ◽  
Cross Linking ◽  
Protein Cross Linking

scholarly journals Protein Cross-Linking Analysis Using Mass Spectrometry, Isotope-Coded Cross-Linkers, and Integrated Computational Data Processing

2006 ◽  
Vol 5 (9) ◽  
pp. 2270-2282 ◽  
Author(s):  
Jan Seebacher ◽  
Parag Mallick ◽  
Ning Zhang ◽  
James S. Eddes ◽  
Ruedi Aebersold ◽  
...  
Keyword(s):  
Mass Spectrometry ◽  
Data Processing ◽  
Cross Linking ◽  
Computational Data ◽  
Protein Cross Linking

scholarly journals Mass Spectrometry Evidence for Cisplatin As a Protein Cross-Linking Reagent

2011 ◽  
Vol 83 (13) ◽  
pp. 5369-5376 ◽  
Author(s):  
Huilin Li ◽  
Yao Zhao ◽  
Hazel I. A. Phillips ◽  
Yulin Qi ◽  
Tzu-Yung Lin ◽  
...  
Keyword(s):  
Mass Spectrometry ◽  
Cross Linking ◽  
Protein Cross Linking

scholarly journals Mass Spectrometry Based Proteomics Study of Cisplatin-Induced DNA–Protein Cross-Linking in Human Fibrosarcoma (HT1080) Cells

2017 ◽  
Vol 30 (4) ◽  
pp. 980-995 ◽  
Author(s):  
Xun Ming ◽  
Arnold Groehler ◽  
Erin D. Michaelson-Richie ◽  
Peter W. Villalta ◽  
Colin Campbell ◽  
...  
Keyword(s):  
Mass Spectrometry ◽  
Cross Linking ◽  
Proteomics Study ◽  
Ht1080 Cells ◽  
Protein Cross Linking

scholarly journals Mass Spectrometry-Based Tools to Characterize DNA-Protein Cross-Linking by Bis -Electrophiles

2017 ◽  
Vol 121 ◽  
pp. 63-77 ◽  
Author(s):  
Arnold Groehler ◽  
Amanda Degner ◽  
Natalia Y. Tretyakova
Keyword(s):  
Mass Spectrometry ◽  
Cross Linking ◽  
Protein Cross Linking
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